Wall clock time and date at job start Tue Mar 31 2020 11:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00221 * 2 1 4 4 H 1.48502 * 109.47093 * 270.00107 * 3 2 1 5 5 H 1.48501 * 109.47151 * 29.99935 * 3 2 1 6 6 H 1.48503 * 109.47185 * 150.00038 * 3 2 1 7 7 C 1.37875 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99871 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00376 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47156 * 179.97438 * 9 7 2 11 11 N 1.46507 * 109.46772 * 180.02562 * 10 9 7 12 12 C 1.38936 * 119.99516 * 180.02562 * 11 10 9 13 13 N 1.32050 * 119.55183 * 359.97438 * 12 11 10 14 14 C 1.32224 * 122.09356 * 180.02562 * 13 12 11 15 15 C 1.38151 * 121.18896 * 359.97438 * 14 13 12 16 16 C 1.48222 * 120.43984 * 180.02562 * 15 14 13 17 17 N 1.34125 * 126.68314 * 180.02562 * 16 15 14 18 18 N 1.28988 * 107.25814 * 179.97438 * 17 16 15 19 19 N 1.28720 * 108.96820 * 359.97438 * 18 17 16 20 20 H 0.97003 * 125.33083 * 179.97438 * 19 18 17 21 21 N 1.28870 * 109.34628 * 359.74852 * 19 18 17 22 22 C 1.42679 * 119.11444 * 0.02562 * 15 14 13 23 23 C 1.44678 * 130.31975 * 180.02562 * 22 15 14 24 24 C 1.32256 * 114.82771 * 179.97438 * 23 22 15 25 25 S 1.75359 * 111.26964 * 0.02562 * 24 23 22 26 26 C 1.39591 * 117.57731 * 359.97438 * 22 15 14 27 27 H 0.97005 * 119.99529 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46898 * 59.99622 * 9 7 2 29 29 H 1.08995 * 109.47153 * 299.99815 * 9 7 2 30 30 H 1.08999 * 109.47296 * 60.00147 * 10 9 7 31 31 H 1.08995 * 109.47168 * 300.00087 * 10 9 7 32 32 H 0.96993 * 120.00153 * 359.97438 * 11 10 9 33 33 H 1.08004 * 119.40009 * 180.02562 * 14 13 12 34 34 H 1.08005 * 122.58295 * 359.97438 * 23 22 15 35 35 H 1.07999 * 124.36400 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 7 5.4865 -2.6366 0.0011 12 6 6.1811 -3.8399 0.0007 13 7 5.5118 -4.9782 -0.0003 14 6 6.1214 -6.1516 -0.0002 15 6 7.5000 -6.2416 0.0003 16 6 8.1661 -7.5657 -0.0002 17 7 9.4870 -7.7981 0.0007 18 7 9.6505 -9.0776 0.0004 19 7 8.4960 -9.6468 -0.0002 20 1 8.3429 -10.6047 -0.0009 21 7 7.5753 -8.7451 0.0052 22 6 8.2739 -5.0429 0.0014 23 6 9.7084 -4.8548 0.0017 24 6 10.1030 -3.5925 0.0022 25 16 8.7330 -2.4978 0.0032 26 6 7.5850 -3.8289 0.0013 27 1 -0.4850 0.8401 -0.0004 28 1 3.8744 -0.6808 0.8905 29 1 3.8752 -0.6798 -0.8894 30 1 3.6584 -3.1503 -0.8903 31 1 3.6577 -3.1506 0.8896 32 1 5.9714 -1.7967 0.0014 33 1 5.5309 -7.0559 -0.0014 34 1 10.4034 -5.6815 0.0014 35 1 11.1357 -3.2766 0.0029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592676612.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:49 Heat of formation + Delta-G solvation = 181.442479 kcal Electronic energy + Delta-G solvation = -22255.525544 eV Core-core repulsion = 18804.031512 eV Total energy + Delta-G solvation = -3451.494032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.080 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.53845 -40.37503 -36.87027 -35.50642 -34.47883 -33.76043 -32.90561 -30.98924 -30.37802 -28.81699 -25.36313 -25.13995 -24.06381 -23.54564 -22.12727 -21.11667 -20.37027 -19.43161 -18.17610 -17.24991 -17.17607 -17.01379 -16.30191 -15.18134 -15.00196 -14.83288 -14.59412 -14.19163 -14.07289 -13.82491 -13.75697 -12.78960 -12.64031 -12.44678 -12.28963 -12.22772 -11.81865 -11.53242 -11.44802 -11.20060 -11.16603 -10.95571 -10.52640 -10.15202 -10.00336 -9.78175 -9.59095 -9.35427 -9.14966 -8.65864 -8.59266 -7.25390 -6.13197 -4.13524 0.38554 0.84333 1.05945 1.38935 1.83236 2.10168 2.11228 2.43229 3.24382 3.28375 3.32558 3.33373 3.65125 3.83484 4.09387 4.36227 4.40775 4.57044 4.87953 5.06694 5.13591 5.19868 5.30662 5.41046 5.56830 5.74577 5.96947 6.02002 6.17166 6.18573 6.25147 6.31674 6.52183 6.94245 7.18909 7.23515 7.43732 7.64806 8.02850 8.21692 8.42183 8.90834 9.46958 10.99674 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.020445 B = 0.003036 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.199323 B = 9220.165382 C =10568.918001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.077 0.923 9 C -0.025 4.025 10 C 0.136 3.864 11 N -0.700 5.700 12 C 0.481 3.519 13 N -0.535 5.535 14 C 0.205 3.795 15 C -0.131 4.131 16 C 0.251 3.749 17 N -0.277 5.277 18 N -0.055 5.055 19 N -0.230 5.230 20 H 0.474 0.526 21 N -0.305 5.305 22 C 0.042 3.958 23 C -0.125 4.125 24 C -0.174 4.174 25 S 0.107 5.893 26 C -0.265 4.265 27 H 0.265 0.735 28 H 0.022 0.978 29 H 0.017 0.983 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.406 0.594 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.692 -14.550 0.014 26.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.095 0.905 9 C -0.062 4.062 10 C 0.015 3.985 11 N -0.326 5.326 12 C 0.233 3.767 13 N -0.255 5.255 14 C 0.047 3.953 15 C -0.144 4.144 16 C -0.028 4.028 17 N -0.151 5.151 18 N -0.050 5.050 19 N -0.076 5.076 20 H 0.327 0.673 21 N -0.157 5.157 22 C 0.025 3.975 23 C -0.155 4.155 24 C -0.310 4.310 25 S 0.369 5.631 26 C -0.387 4.387 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.036 0.964 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.241 0.759 33 H 0.184 0.816 34 H 0.180 0.820 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 20.785 -13.186 0.023 24.614 hybrid contribution 1.115 -0.680 -0.020 1.306 sum 21.900 -13.865 0.003 25.920 Atomic orbital electron populations 1.69899 1.06273 1.27080 1.50316 1.24986 0.94756 0.99120 0.94334 0.86779 0.80311 0.83614 0.78561 1.20186 1.21226 1.19067 1.20869 0.88425 0.94935 1.51780 0.90487 1.19826 0.98170 0.91369 0.96884 1.21623 0.74682 1.00152 1.02090 1.45410 1.08809 1.03601 1.74786 1.17955 0.84452 0.87835 0.86449 1.67492 1.37757 0.96427 1.23823 1.22290 0.89744 0.95110 0.88199 1.17473 0.92798 0.85389 1.18714 1.23285 0.87313 0.92469 0.99776 1.76034 1.15880 1.04314 1.18864 1.78849 1.09190 1.02151 1.14815 1.47647 1.01432 1.12034 1.46494 0.67252 1.74978 1.19176 0.97925 1.23574 1.18894 0.92647 0.90729 0.95261 1.21129 0.93342 0.97708 1.03354 1.25353 1.02880 0.96402 1.06351 1.84035 0.94397 1.06968 1.77750 1.22939 0.96734 0.98224 1.20779 0.92519 0.96008 0.96443 0.91441 0.91423 0.75854 0.81553 0.82012 0.81111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 7 C -0.52 -14.33 9.66 -34.44 -0.33 -14.67 16 8 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 9 C -0.02 -0.55 4.16 -27.88 -0.12 -0.67 16 10 C 0.14 2.66 5.62 -4.04 -0.02 2.64 16 11 N -0.70 -11.58 5.70 -60.17 -0.34 -11.93 16 12 C 0.48 7.69 7.51 -154.90 -1.16 6.53 16 13 N -0.53 -8.68 9.51 -12.12 -0.12 -8.79 16 14 C 0.21 2.82 10.80 -17.41 -0.19 2.63 16 15 C -0.13 -1.76 5.94 -104.11 -0.62 -2.38 16 16 C 0.25 3.10 7.94 -156.26 -1.24 1.86 16 17 N -0.28 -3.37 10.43 32.13 0.34 -3.04 16 18 N -0.05 -0.55 13.47 60.35 0.81 0.26 16 19 N -0.23 -1.76 7.90 60.35 0.48 -1.28 16 20 H 0.47 1.26 8.96 -340.35 -3.05 -1.79 16 21 N -0.30 -3.19 12.07 32.14 0.39 -2.81 16 22 C 0.04 0.57 6.03 -105.14 -0.63 -0.06 16 23 C -0.12 -1.42 9.79 -38.97 -0.38 -1.81 16 24 C -0.17 -1.72 11.05 28.81 0.32 -1.40 16 25 S 0.11 1.22 22.71 -107.50 -2.44 -1.22 16 26 C -0.27 -3.76 6.42 -38.27 -0.25 -4.00 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.49 7.20 -51.93 -0.37 0.11 16 29 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.41 6.08 7.98 -40.82 -0.33 5.75 16 33 H 0.17 1.92 7.85 -52.48 -0.41 1.51 16 34 H 0.16 1.75 6.50 -52.48 -0.34 1.40 16 35 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -32.51 321.07 -10.42 -42.93 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.75 Total: 0.46 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -4.72 Total: -9.44 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 2.33 Total: -53.83 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.44 Total: -1.22 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.51 -10.42 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592676612.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.373 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds