Wall clock time and date at job start Tue Mar 31 2020 11:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46961 * 238.85375 * 3 2 1 5 5 C 1.36888 * 119.99611 * 274.87750 * 4 3 2 6 6 H 1.07997 * 119.99916 * 188.47639 * 5 4 3 7 7 C 1.39038 * 120.00083 * 8.48108 * 5 4 3 8 8 N 1.31369 * 119.99987 * 14.88799 * 7 5 4 9 9 Si 1.86805 * 119.99760 * 194.88713 * 7 5 4 10 10 H 1.48502 * 109.46839 * 90.00251 * 9 7 5 11 11 H 1.48501 * 109.46949 * 210.00020 * 9 7 5 12 12 H 1.48494 * 109.47376 * 330.00101 * 9 7 5 13 13 C 1.34772 * 120.00302 * 94.88129 * 4 3 2 14 14 O 1.21604 * 120.00233 * 184.94312 * 13 4 3 15 15 C 1.47635 * 119.99894 * 4.94422 * 13 4 3 16 16 C 1.39796 * 120.06559 * 310.33782 * 15 13 4 17 17 C 1.37862 * 120.11216 * 179.97438 * 16 15 13 18 18 C 1.38491 * 120.25039 * 0.02562 * 17 16 15 19 19 F 1.35101 * 119.93652 * 179.97438 * 18 17 16 20 20 C 1.39683 * 120.13607 * 0.27202 * 18 17 16 21 21 C 1.48449 * 120.06149 * 179.70254 * 20 18 17 22 22 N 1.34046 * 126.67368 * 179.68576 * 21 20 18 23 23 N 1.28988 * 107.26597 * 179.83229 * 22 21 20 24 24 N 1.28722 * 108.94684 * 0.43800 * 23 22 21 25 25 H 0.96997 * 125.34356 * 179.74242 * 24 23 22 26 26 N 1.28877 * 109.31749 * 359.71958 * 24 23 22 27 27 C 1.38947 * 119.87567 * 359.44962 * 20 18 17 28 28 H 1.08994 * 109.47248 * 118.85215 * 3 2 1 29 29 H 1.09006 * 109.47532 * 358.84954 * 3 2 1 30 30 H 0.96995 * 119.99925 * 179.97438 * 8 7 5 31 31 H 1.08002 * 119.94210 * 359.96644 * 16 15 13 32 32 H 1.07998 * 119.87496 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.11866 * 180.27529 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7153 1.1822 5 6 3.2285 2.0774 1.1522 6 1 3.7143 2.5908 1.9687 7 6 2.7374 2.8000 0.0706 8 7 1.9009 2.2360 -0.7708 9 14 3.2671 4.5729 -0.1861 10 1 4.4856 4.6076 -1.0343 11 1 2.1754 5.3235 -0.8570 12 1 3.5614 5.1970 1.1288 13 6 3.4146 0.0317 2.2991 14 8 3.7334 0.6305 3.3084 15 6 3.3765 -1.4442 2.2974 16 6 2.2501 -2.1151 1.8121 17 6 2.2138 -3.4933 1.8096 18 6 3.2911 -4.2205 2.2875 19 9 3.2485 -5.5708 2.2825 20 6 4.4193 -3.5607 2.7805 21 6 5.5704 -4.3419 3.2985 22 7 6.7144 -3.8491 3.7938 23 7 7.4478 -4.8536 4.1355 24 7 6.8164 -5.9427 3.8670 25 1 7.1514 -6.8391 4.0249 26 7 5.6688 -5.6551 3.3557 27 6 4.4642 -2.1720 2.7803 28 1 2.9711 0.4967 -0.9000 29 1 2.9719 -1.0267 0.0206 30 1 1.5580 2.7402 -1.5252 31 1 1.4070 -1.5528 1.4387 32 1 1.3415 -4.0077 1.4342 33 1 5.3363 -1.6579 3.1564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592677695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:07 Heat of formation + Delta-G solvation = 129.177586 kcal Electronic energy + Delta-G solvation = -25208.684750 eV Core-core repulsion = 21188.711166 eV Total energy + Delta-G solvation = -4019.973584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.89356 -44.54369 -39.85675 -37.88478 -35.95893 -34.54288 -34.39199 -33.71240 -32.05526 -30.90482 -30.33553 -27.59676 -25.43345 -24.79663 -24.62691 -22.80189 -22.07773 -19.82371 -19.25299 -18.15449 -17.60437 -17.26014 -17.03896 -16.42637 -16.28701 -15.57273 -15.20091 -14.89325 -14.34774 -14.23427 -13.93004 -13.71584 -13.39309 -13.25005 -12.79741 -12.50511 -12.42775 -12.30352 -11.96862 -11.64671 -11.46204 -11.33262 -11.30231 -11.23622 -11.10095 -11.01016 -10.58867 -10.47319 -10.39866 -9.40982 -8.99871 -8.87733 -8.48309 -8.28827 -6.62761 -4.11488 0.53097 1.01759 1.12886 2.11227 2.19851 3.01637 3.15917 3.20196 3.31099 3.48078 3.63721 3.77022 3.94572 3.98529 4.03130 4.22022 4.60298 4.76496 4.80201 4.96089 5.13854 5.26160 5.29528 5.38494 5.40544 5.75890 5.92747 6.02636 6.05813 6.14759 6.23758 6.43359 6.58377 6.73267 7.32384 7.69288 8.03728 8.13261 8.70309 8.84168 9.02369 9.54989 10.38831 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.003796 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.135935 B = 7373.614681 C = 8404.444443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.255 3.745 3 C 0.213 3.787 4 N -0.429 5.429 5 C -0.303 4.303 6 H 0.116 0.884 7 C 0.031 3.969 8 N -0.882 5.882 9 Si 0.939 3.061 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.484 3.516 14 O -0.564 6.564 15 C -0.106 4.106 16 C -0.054 4.054 17 C -0.156 4.156 18 C 0.139 3.861 19 F -0.123 7.123 20 C -0.062 4.062 21 C 0.224 3.776 22 N -0.259 5.259 23 N -0.051 5.051 24 N -0.231 5.231 25 H 0.474 0.526 26 N -0.285 5.285 27 C -0.007 4.007 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.277 0.723 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 -15.177 1.512 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.157 5.157 2 C -0.062 4.062 3 C 0.086 3.914 4 N -0.147 5.147 5 C -0.430 4.430 6 H 0.134 0.866 7 C -0.172 4.172 8 N -0.522 5.522 9 Si 0.765 3.235 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.191 1.191 13 C 0.272 3.728 14 O -0.448 6.448 15 C -0.110 4.110 16 C -0.074 4.074 17 C -0.175 4.175 18 C 0.117 3.883 19 F -0.101 7.101 20 C -0.067 4.067 21 C -0.056 4.056 22 N -0.132 5.132 23 N -0.046 5.046 24 N -0.076 5.076 25 H 0.328 0.672 26 N -0.136 5.136 27 C -0.028 4.028 28 H 0.155 0.845 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.800 -14.886 2.097 16.113 hybrid contribution 0.210 0.088 -0.443 0.498 sum 6.010 -14.798 1.654 16.058 Atomic orbital electron populations 1.80934 1.13364 1.12489 1.08930 1.28987 0.95145 0.89841 0.92231 1.19119 0.81951 0.96701 0.93650 1.43601 1.54760 1.07159 1.09201 1.19926 1.35930 0.80324 1.06827 0.86645 1.25344 0.94858 1.01128 0.95909 1.69655 1.28082 1.38394 1.16080 0.85704 0.78218 0.80607 0.79008 1.19916 1.20908 1.19149 1.17662 0.85848 0.85251 0.84013 1.90688 1.53280 1.69202 1.31581 1.20214 0.94511 0.95587 1.00640 1.21663 0.97768 0.93449 0.94484 1.20968 0.98392 0.94219 1.03945 1.17660 0.94208 0.77112 0.99298 1.91543 1.96513 1.28224 1.93869 1.17085 0.90191 0.92347 1.07030 1.23388 0.95009 0.86581 1.00590 1.76147 1.01943 1.20925 1.14235 1.78912 1.20986 0.88722 1.16009 1.47759 1.09196 1.11707 1.38966 0.67159 1.75108 1.03859 1.16567 1.18079 1.21104 0.98378 0.90183 0.93139 0.84529 0.89877 0.91139 0.84121 0.83631 0.82931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.71 18.54 42.15 0.78 -9.93 16 2 C 0.26 5.35 10.61 -20.76 -0.22 5.13 16 3 C 0.21 4.07 4.76 -6.82 -0.03 4.03 16 4 N -0.43 -9.57 2.59 -119.08 -0.31 -9.88 16 5 C -0.30 -7.43 9.46 -15.00 -0.14 -7.58 16 6 H 0.12 2.98 7.26 -52.49 -0.38 2.60 16 7 C 0.03 0.71 5.17 -17.45 -0.09 0.62 16 8 N -0.88 -20.76 8.39 55.50 0.47 -20.30 16 9 Si 0.94 18.95 29.58 -169.99 -5.03 13.92 16 10 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 12 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 13 C 0.48 10.58 7.17 -12.43 -0.09 10.49 16 14 O -0.56 -14.36 16.65 5.27 0.09 -14.27 16 15 C -0.11 -1.84 4.89 -105.01 -0.51 -2.35 16 16 C -0.05 -0.82 7.55 -39.14 -0.30 -1.12 16 17 C -0.16 -2.01 10.00 -39.63 -0.40 -2.41 16 18 C 0.14 1.88 7.28 -38.95 -0.28 1.60 16 19 F -0.12 -1.64 15.81 2.25 0.04 -1.60 16 20 C -0.06 -0.90 5.88 -104.89 -0.62 -1.52 16 21 C 0.22 3.17 7.92 -156.31 -1.24 1.93 16 22 N -0.26 -3.76 12.23 32.15 0.39 -3.36 16 23 N -0.05 -0.61 13.47 60.35 0.81 0.21 16 24 N -0.23 -2.09 7.90 60.35 0.48 -1.61 16 25 H 0.47 1.79 8.96 -340.38 -3.05 -1.26 16 26 N -0.28 -3.47 11.08 32.17 0.36 -3.11 16 27 C -0.01 -0.11 9.38 -38.85 -0.36 -0.47 16 28 H 0.14 2.68 6.31 -51.93 -0.33 2.35 16 29 H 0.08 1.28 5.53 -51.93 -0.29 1.00 16 30 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 31 H 0.14 2.32 4.82 -52.49 -0.25 2.06 16 32 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.15 2.45 7.88 -52.49 -0.41 2.04 16 LS Contribution 304.73 15.07 4.59 4.59 Total: -1.00 -30.66 304.73 -5.89 -36.55 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.27 Total: 0.43 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -4.28 Total: 8.37 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 2.98 Total: -47.99 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.09 Total: -14.27 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.66 -5.89 -36.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.726 kcal (2) G-P(sol) polarization free energy of solvation -30.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds