Wall clock time and date at job start Tue Mar 31 2020 11:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46961 * 238.85375 * 3 2 1 5 5 C 1.36888 * 119.99611 * 274.87750 * 4 3 2 6 6 H 1.07997 * 119.99916 * 188.47639 * 5 4 3 7 7 C 1.39038 * 120.00083 * 8.48108 * 5 4 3 8 8 N 1.31369 * 119.99987 * 14.88799 * 7 5 4 9 9 Si 1.86805 * 119.99760 * 194.88713 * 7 5 4 10 10 H 1.48502 * 109.46839 * 90.00251 * 9 7 5 11 11 H 1.48501 * 109.46949 * 210.00020 * 9 7 5 12 12 H 1.48494 * 109.47376 * 330.00101 * 9 7 5 13 13 C 1.34772 * 120.00302 * 94.88129 * 4 3 2 14 14 O 1.21604 * 120.00233 * 184.94312 * 13 4 3 15 15 C 1.47635 * 119.99894 * 4.94422 * 13 4 3 16 16 C 1.39796 * 120.06559 * 310.33782 * 15 13 4 17 17 C 1.37862 * 120.11216 * 179.97438 * 16 15 13 18 18 C 1.38491 * 120.25039 * 0.02562 * 17 16 15 19 19 F 1.35101 * 119.93652 * 179.97438 * 18 17 16 20 20 C 1.39683 * 120.13607 * 0.27202 * 18 17 16 21 21 C 1.48449 * 120.06149 * 179.70254 * 20 18 17 22 22 N 1.34046 * 126.67368 * 179.68576 * 21 20 18 23 23 N 1.28988 * 107.26597 * 179.83229 * 22 21 20 24 24 N 1.28722 * 108.94684 * 0.43800 * 23 22 21 25 25 H 0.96997 * 125.34356 * 179.74242 * 24 23 22 26 26 N 1.28877 * 109.31749 * 359.71958 * 24 23 22 27 27 C 1.38947 * 119.87567 * 359.44962 * 20 18 17 28 28 H 1.08994 * 109.47248 * 118.85215 * 3 2 1 29 29 H 1.09006 * 109.47532 * 358.84954 * 3 2 1 30 30 H 0.96995 * 119.99925 * 179.97438 * 8 7 5 31 31 H 1.08002 * 119.94210 * 359.96644 * 16 15 13 32 32 H 1.07998 * 119.87496 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.11866 * 180.27529 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7153 1.1822 5 6 3.2285 2.0774 1.1522 6 1 3.7143 2.5908 1.9687 7 6 2.7374 2.8000 0.0706 8 7 1.9009 2.2360 -0.7708 9 14 3.2671 4.5729 -0.1861 10 1 4.4856 4.6076 -1.0343 11 1 2.1754 5.3235 -0.8570 12 1 3.5614 5.1970 1.1288 13 6 3.4146 0.0317 2.2991 14 8 3.7334 0.6305 3.3084 15 6 3.3765 -1.4442 2.2974 16 6 2.2501 -2.1151 1.8121 17 6 2.2138 -3.4933 1.8096 18 6 3.2911 -4.2205 2.2875 19 9 3.2485 -5.5708 2.2825 20 6 4.4193 -3.5607 2.7805 21 6 5.5704 -4.3419 3.2985 22 7 6.7144 -3.8491 3.7938 23 7 7.4478 -4.8536 4.1355 24 7 6.8164 -5.9427 3.8670 25 1 7.1514 -6.8391 4.0249 26 7 5.6688 -5.6551 3.3557 27 6 4.4642 -2.1720 2.7803 28 1 2.9711 0.4967 -0.9000 29 1 2.9719 -1.0267 0.0206 30 1 1.5580 2.7402 -1.5252 31 1 1.4070 -1.5528 1.4387 32 1 1.3415 -4.0077 1.4342 33 1 5.3363 -1.6579 3.1564 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592677695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:07 Heat of formation + Delta-G solvation = 109.183507 kcal Electronic energy + Delta-G solvation = -25209.551758 eV Core-core repulsion = 21188.711166 eV Total energy + Delta-G solvation = -4020.840592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.98639 -45.50357 -41.34536 -39.30577 -37.70584 -36.15713 -35.53037 -34.76743 -33.77871 -32.06664 -31.61951 -29.24241 -27.06796 -25.85658 -25.72494 -24.13965 -23.21106 -21.25518 -20.24336 -19.90490 -18.75703 -18.51451 -18.21154 -18.00032 -17.56357 -16.82083 -16.65538 -16.25577 -15.98384 -15.43134 -15.28985 -15.01155 -14.85359 -14.75616 -14.12024 -13.92677 -13.73802 -13.51253 -13.37777 -13.33269 -13.05115 -12.93178 -12.48163 -12.36681 -12.30586 -12.25362 -12.16029 -12.11389 -11.92002 -11.16716 -10.66150 -10.13302 -10.04200 -9.72758 -8.42356 -5.98846 -0.60105 -0.13436 0.12350 1.08625 1.36891 1.41662 1.49283 1.59167 1.78542 1.97663 2.25667 2.34293 2.46498 2.51181 2.86527 2.95752 3.01790 3.19141 3.55628 3.69295 3.79192 3.86817 4.10348 4.15612 4.37263 4.47773 4.62776 4.79922 4.86950 4.93146 5.00906 5.20048 5.44672 5.55045 5.61565 5.92692 6.33939 7.01929 7.05459 7.06600 7.25797 7.80261 8.56555 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.003796 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.135935 B = 7373.614681 C = 8404.444443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C 0.268 3.732 3 C 0.217 3.783 4 N -0.439 5.439 5 C -0.335 4.335 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.891 5.891 9 Si 0.994 3.006 10 H -0.260 1.260 11 H -0.283 1.283 12 H -0.277 1.277 13 C 0.482 3.518 14 O -0.611 6.611 15 C -0.120 4.120 16 C -0.051 4.051 17 C -0.134 4.134 18 C 0.153 3.847 19 F -0.116 7.116 20 C -0.058 4.058 21 C 0.207 3.793 22 N -0.289 5.289 23 N -0.052 5.052 24 N -0.196 5.196 25 H 0.496 0.504 26 N -0.281 5.281 27 C -0.006 4.006 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.279 0.721 31 H 0.132 0.868 32 H 0.180 0.820 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.954 -17.537 0.793 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.049 4.049 3 C 0.091 3.909 4 N -0.157 5.157 5 C -0.462 4.462 6 H 0.108 0.892 7 C -0.194 4.194 8 N -0.531 5.531 9 Si 0.818 3.182 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.202 1.202 13 C 0.272 3.728 14 O -0.497 6.497 15 C -0.123 4.123 16 C -0.071 4.071 17 C -0.152 4.152 18 C 0.131 3.869 19 F -0.094 7.094 20 C -0.062 4.062 21 C -0.073 4.073 22 N -0.161 5.161 23 N -0.047 5.047 24 N -0.047 5.047 25 H 0.356 0.644 26 N -0.134 5.134 27 C -0.027 4.027 28 H 0.151 0.849 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.198 0.802 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.973 -17.291 1.358 18.344 hybrid contribution 0.219 0.623 -0.143 0.675 sum 6.192 -16.668 1.215 17.823 Atomic orbital electron populations 1.80929 1.14209 1.13553 1.09895 1.29274 0.95408 0.88912 0.91314 1.19294 0.80872 0.98516 0.92245 1.43722 1.54918 1.06797 1.10247 1.19807 1.37534 0.81810 1.07080 0.89198 1.25914 0.94381 1.03930 0.95225 1.69734 1.28002 1.39271 1.16060 0.84899 0.78194 0.76760 0.78376 1.18507 1.20835 1.20195 1.18342 0.84171 0.87143 0.83118 1.90642 1.54963 1.70887 1.33235 1.19783 0.96321 0.92789 1.03422 1.21488 0.96518 0.94393 0.94696 1.21160 0.99001 0.92903 1.02178 1.17648 0.93744 0.77332 0.98222 1.91569 1.96427 1.27730 1.93669 1.17064 0.90838 0.91714 1.06589 1.23340 0.95085 0.87199 1.01654 1.76149 1.02515 1.22166 1.15314 1.78862 1.20775 0.88994 1.16052 1.47819 1.07953 1.12402 1.36573 0.64442 1.75052 1.04751 1.15599 1.18014 1.20902 0.97722 0.90834 0.93237 0.84860 0.85905 0.91029 0.85083 0.80243 0.83963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.43 18.54 20.01 0.37 -22.06 16 2 C 0.27 11.07 10.61 89.44 0.95 12.02 16 3 C 0.22 8.20 4.76 84.57 0.40 8.60 16 4 N -0.44 -20.01 2.59 -648.92 -1.68 -21.69 16 5 C -0.34 -16.97 9.46 84.10 0.80 -16.17 16 6 H 0.09 4.92 7.26 -2.91 -0.02 4.90 16 7 C 0.01 0.34 5.17 84.95 0.44 0.78 16 8 N -0.89 -41.80 8.39 21.68 0.18 -41.62 16 9 Si 0.99 39.07 29.58 68.60 2.03 41.10 16 10 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 11 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 13 C 0.48 21.71 7.17 86.73 0.62 22.34 16 14 O -0.61 -32.61 16.65 -4.04 -0.07 -32.67 16 15 C -0.12 -4.13 4.89 -20.12 -0.10 -4.22 16 16 C -0.05 -1.47 7.55 22.56 0.17 -1.30 16 17 C -0.13 -3.00 10.00 22.24 0.22 -2.77 16 18 C 0.15 3.66 7.28 22.68 0.17 3.82 16 19 F -0.12 -2.65 15.81 44.97 0.71 -1.94 16 20 C -0.06 -1.58 5.88 -20.04 -0.12 -1.69 16 21 C 0.21 5.51 7.92 137.38 1.09 6.59 16 22 N -0.29 -8.08 12.23 -52.19 -0.64 -8.72 16 23 N -0.05 -1.14 13.47 37.02 0.50 -0.64 16 24 N -0.20 -3.02 7.90 37.02 0.29 -2.73 16 25 H 0.50 2.16 8.96 -347.54 -3.12 -0.96 16 26 N -0.28 -6.11 11.08 -52.14 -0.58 -6.69 16 27 C -0.01 -0.18 9.38 22.74 0.21 0.03 16 28 H 0.13 5.17 6.31 -2.39 -0.02 5.16 16 29 H 0.12 3.61 5.53 -2.38 -0.01 3.60 16 30 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 31 H 0.13 4.14 4.82 -2.91 -0.01 4.12 16 32 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 33 H 0.14 4.73 7.88 -2.91 -0.02 4.71 16 Total: -1.00 -67.34 304.73 4.10 -63.25 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -1.87 Total: 6.40 kcal Atomic # 6 Polarization: 23.17 SS G_CDS: 4.85 Total: 28.02 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -1.55 Total: -104.16 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.07 Total: -32.67 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.71 Total: -1.94 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -67.34 4.10 -63.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592677695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.431 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds