Wall clock time and date at job start Tue Mar 31 2020 11:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47161 * 263.97296 * 3 2 1 5 5 C 1.46497 * 119.99877 * 275.00267 * 4 3 2 6 6 C 1.52999 * 109.47268 * 274.99865 * 5 4 3 7 7 C 1.50697 * 109.47359 * 180.02562 * 6 5 4 8 8 O 1.20824 * 120.00138 * 359.97438 * 7 6 5 9 9 O 1.34235 * 120.00211 * 179.97438 * 7 6 5 10 10 S 1.65598 * 120.00027 * 95.00005 * 4 3 2 11 11 O 1.42104 * 104.27721 * 153.92650 * 10 4 3 12 12 O 1.42102 * 104.27547 * 26.07253 * 10 4 3 13 13 C 1.81402 * 104.44974 * 270.00197 * 10 4 3 14 14 C 1.53002 * 109.46948 * 186.22648 * 13 10 4 15 15 C 1.50703 * 115.54891 * 299.70530 * 14 13 10 16 16 H 1.08002 * 119.99513 * 95.16620 * 15 14 13 17 17 C 1.37876 * 120.00246 * 275.17219 * 15 14 13 18 18 N 1.31509 * 119.99768 * 7.14278 * 17 15 14 19 19 Si 1.86800 * 120.00012 * 187.14937 * 17 15 14 20 20 H 1.48492 * 109.47259 * 269.99705 * 19 17 15 21 21 H 1.48500 * 109.46931 * 29.99983 * 19 17 15 22 22 H 1.48501 * 109.47086 * 149.99549 * 19 17 15 23 23 C 1.52993 * 117.50058 * 85.37810 * 14 13 10 24 24 C 1.52991 * 117.49971 * 154.03882 * 14 13 10 25 25 H 1.09001 * 109.47026 * 143.97404 * 3 2 1 26 26 H 1.09003 * 109.47118 * 23.97745 * 3 2 1 27 27 H 1.08999 * 109.47474 * 34.99809 * 5 4 3 28 28 H 1.08999 * 109.47181 * 155.00176 * 5 4 3 29 29 H 1.08998 * 109.47349 * 300.00295 * 6 5 4 30 30 H 1.09007 * 109.47333 * 59.99771 * 6 5 4 31 31 H 0.96689 * 117.00208 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.47189 * 66.22458 * 13 10 4 33 33 H 1.08995 * 109.47059 * 306.22216 * 13 10 4 34 34 H 0.96997 * 120.00683 * 355.44767 * 18 17 15 35 35 H 1.09001 * 117.50089 * 215.00213 * 23 14 13 36 36 H 1.09004 * 117.50111 * 0.02562 * 23 14 13 37 37 H 1.09000 * 117.49904 * 359.97355 * 24 14 13 38 38 H 1.09001 * 117.50170 * 144.97237 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.1459 1.3736 5 6 3.2355 1.4792 1.9643 6 6 4.5921 2.0702 1.5754 7 6 4.7356 3.4415 2.1836 8 8 3.8441 3.8995 2.8584 9 8 5.8539 4.1543 1.9756 10 16 3.4907 -1.1971 2.2585 11 8 4.4486 -0.7289 3.1979 12 8 3.8367 -2.1705 1.2827 13 6 1.9487 -1.6560 3.0965 14 6 2.2207 -2.8013 4.0738 15 6 2.7553 -4.0684 3.4576 16 1 3.8198 -4.2494 3.4327 17 6 1.8856 -4.9966 2.9254 18 7 0.6044 -4.7166 2.8276 19 14 2.5272 -6.6516 2.3435 20 1 2.9110 -6.5583 0.9121 21 1 3.7139 -7.0339 3.1503 22 1 1.4667 -7.6784 2.5058 23 6 2.7161 -2.4329 5.4736 24 6 1.2856 -2.9407 5.2766 25 1 2.9709 0.8320 -0.6044 26 1 2.9717 -0.9382 -0.4176 27 1 2.4387 2.1251 1.5955 28 1 3.1695 1.4045 3.0497 29 1 5.3890 1.4244 1.9442 30 1 4.6582 2.1450 0.4899 31 1 5.9002 5.0284 2.3865 32 1 1.2146 -1.9759 2.3570 33 1 1.5625 -0.7958 3.6433 34 1 0.2606 -3.8850 3.1896 35 1 3.4288 -3.1069 5.9489 36 1 2.8479 -1.3745 5.6986 37 1 0.4769 -2.2162 5.3720 38 1 1.0568 -3.9489 5.6221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:32 Heat of formation + Delta-G solvation = -110.966349 kcal Electronic energy + Delta-G solvation = -25152.381855 eV Core-core repulsion = 21316.313603 eV Total energy + Delta-G solvation = -3836.068252 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.49046 -37.74042 -37.13770 -36.73111 -36.37528 -35.75301 -35.32096 -32.03128 -31.78960 -28.46337 -27.83001 -25.05364 -24.40380 -21.46227 -21.31087 -20.04506 -19.07161 -18.40029 -17.76702 -17.38287 -17.20901 -16.79285 -16.23226 -15.85804 -15.45735 -14.69125 -14.29108 -14.05622 -13.84033 -13.76435 -13.71110 -13.31825 -13.17640 -12.70084 -12.63945 -12.52289 -12.05239 -11.94601 -11.82548 -11.72300 -11.48620 -11.30036 -11.21183 -11.10466 -10.85266 -10.80665 -10.73012 -10.45653 -10.13195 -9.87012 -9.53174 -8.71984 -8.53514 -8.39007 -6.49791 -4.30241 0.64562 1.97127 2.37909 2.74227 2.80068 3.26416 3.43779 3.45906 3.61519 3.85386 4.26589 4.44668 4.45786 4.53846 4.57783 4.82293 4.91596 5.05966 5.10246 5.15787 5.29337 5.32540 5.43974 5.60066 5.71181 5.77495 6.00851 6.11166 6.23341 6.28461 6.31191 6.49300 6.70603 6.94999 7.13048 7.47894 7.63260 7.97551 8.28301 8.71621 9.49993 10.89736 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.004605 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.232027 B = 6078.924779 C = 6516.590492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C 0.177 3.823 3 C 0.209 3.791 4 N -1.004 6.004 5 C 0.132 3.868 6 C -0.138 4.138 7 C 0.487 3.513 8 O -0.517 6.517 9 O -0.517 6.517 10 S 2.608 3.392 11 O -0.956 6.956 12 O -0.932 6.932 13 C -0.565 4.565 14 C 0.020 3.980 15 C -0.595 4.595 16 H 0.063 0.937 17 C 0.041 3.959 18 N -0.894 5.894 19 Si 1.066 2.934 20 H -0.281 1.281 21 H -0.285 1.285 22 H -0.284 1.284 23 C -0.189 4.189 24 C -0.163 4.163 25 H 0.126 0.874 26 H 0.144 0.856 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.410 0.590 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.275 0.725 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.860 14.799 -4.665 17.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.087 5.087 2 C -0.143 4.143 3 C 0.080 3.920 4 N -0.837 5.837 5 C 0.006 3.994 6 C -0.177 4.177 7 C 0.329 3.671 8 O -0.405 6.405 9 O -0.329 6.329 10 S 2.705 3.295 11 O -0.947 6.947 12 O -0.922 6.922 13 C -0.698 4.698 14 C 0.018 3.982 15 C -0.632 4.632 16 H 0.081 0.919 17 C -0.167 4.167 18 N -0.527 5.527 19 Si 0.893 3.107 20 H -0.207 1.207 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.227 4.227 24 C -0.203 4.203 25 H 0.144 0.856 26 H 0.162 0.838 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.140 0.860 30 H 0.132 0.868 31 H 0.269 0.731 32 H 0.143 0.857 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.314 12.751 -5.407 15.222 hybrid contribution 0.037 2.291 1.208 2.590 sum 6.350 15.042 -4.198 16.859 Atomic orbital electron populations 1.81213 1.13081 1.08301 1.06097 1.29994 0.96029 0.93711 0.94592 1.18848 0.80438 1.07853 0.84910 1.58267 1.81009 1.21369 1.23102 1.21041 0.95409 0.83089 0.99823 1.21857 1.01953 0.90430 1.03469 1.23318 0.78783 0.87502 0.77523 1.90747 1.41160 1.71228 1.37377 1.84539 1.41926 1.34344 1.72079 1.05412 0.77553 0.71976 0.74540 1.93519 1.57453 1.79843 1.63864 1.93554 1.81970 1.57980 1.58744 1.30131 1.20020 1.07213 1.12423 1.18564 1.01501 0.93211 0.84944 1.21389 0.95192 1.02453 1.44135 0.91875 1.25830 0.94364 1.03014 0.93508 1.70736 1.14156 1.27803 1.40053 0.83597 0.75292 0.74815 0.76995 1.20740 1.21032 1.20916 1.23056 0.97807 0.99601 1.02187 1.22794 0.91724 1.01076 1.04669 0.85584 0.83829 0.89244 0.88516 0.86017 0.86812 0.73111 0.85731 0.88042 0.91332 0.89146 0.90612 0.91199 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -6.72 18.54 42.15 0.78 -5.94 16 2 C 0.18 2.36 15.76 -20.76 -0.33 2.03 16 3 C 0.21 2.06 6.14 -6.83 -0.04 2.02 16 4 N -1.00 -12.46 2.68 -117.50 -0.31 -12.77 16 5 C 0.13 1.41 4.54 -4.04 -0.02 1.40 16 6 C -0.14 -1.21 6.13 -27.88 -0.17 -1.38 16 7 C 0.49 4.71 8.33 36.00 0.30 5.01 16 8 O -0.52 -6.57 16.74 -18.75 -0.31 -6.88 16 9 O -0.52 -3.78 13.42 -39.27 -0.53 -4.31 16 10 S 2.61 47.28 5.01 -107.50 -0.54 46.74 16 11 O -0.96 -18.44 16.75 -57.54 -0.96 -19.40 16 12 O -0.93 -19.52 16.03 -57.54 -0.92 -20.44 16 13 C -0.57 -11.44 5.98 37.16 0.22 -11.22 16 14 C 0.02 0.48 0.95 -155.67 -0.15 0.33 16 15 C -0.59 -15.95 7.89 -34.44 -0.27 -16.22 16 16 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 17 C 0.04 1.11 5.39 -17.82 -0.10 1.02 16 18 N -0.89 -25.61 13.57 55.43 0.75 -24.85 16 19 Si 1.07 24.80 29.91 -169.99 -5.08 19.72 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.19 -4.02 9.95 -26.70 -0.27 -4.28 16 24 C -0.16 -3.63 8.74 -26.70 -0.23 -3.86 16 25 H 0.13 0.61 8.11 -51.93 -0.42 0.18 16 26 H 0.14 1.43 6.82 -51.93 -0.35 1.07 16 27 H 0.09 0.82 8.07 -51.93 -0.42 0.40 16 28 H 0.10 1.15 7.56 -51.93 -0.39 0.76 16 29 H 0.12 1.17 7.90 -51.93 -0.41 0.76 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.41 1.32 9.10 45.56 0.41 1.73 16 32 H 0.12 2.69 7.79 -51.92 -0.40 2.28 16 33 H 0.10 1.75 8.11 -51.93 -0.42 1.33 16 34 H 0.28 7.76 6.17 -40.82 -0.25 7.51 16 35 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 351.92 15.07 5.30 5.30 Total: -1.00 -36.40 351.92 -6.86 -43.26 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.98 Total: 4.74 kcal Atomic # 6 Polarization: -24.11 SS G_CDS: -1.05 Total: -25.16 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 1.22 Total: -43.57 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -2.73 Total: -51.03 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.54 Total: 46.74 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.40 -6.86 -43.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.710 kcal (2) G-P(sol) polarization free energy of solvation -36.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds