Wall clock time and date at job start Tue Mar 31 2020 11:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47161 * 263.97296 * 3 2 1 5 5 C 1.46497 * 119.99877 * 275.00267 * 4 3 2 6 6 C 1.52999 * 109.47268 * 274.99865 * 5 4 3 7 7 C 1.50697 * 109.47359 * 180.02562 * 6 5 4 8 8 O 1.20824 * 120.00138 * 359.97438 * 7 6 5 9 9 O 1.34235 * 120.00211 * 179.97438 * 7 6 5 10 10 S 1.65598 * 120.00027 * 95.00005 * 4 3 2 11 11 O 1.42104 * 104.27721 * 153.92650 * 10 4 3 12 12 O 1.42102 * 104.27547 * 26.07253 * 10 4 3 13 13 C 1.81402 * 104.44974 * 270.00197 * 10 4 3 14 14 C 1.53002 * 109.46948 * 186.22648 * 13 10 4 15 15 C 1.50703 * 115.54891 * 299.70530 * 14 13 10 16 16 H 1.08002 * 119.99513 * 95.16620 * 15 14 13 17 17 C 1.37876 * 120.00246 * 275.17219 * 15 14 13 18 18 N 1.31509 * 119.99768 * 7.14278 * 17 15 14 19 19 Si 1.86800 * 120.00012 * 187.14937 * 17 15 14 20 20 H 1.48492 * 109.47259 * 269.99705 * 19 17 15 21 21 H 1.48500 * 109.46931 * 29.99983 * 19 17 15 22 22 H 1.48501 * 109.47086 * 149.99549 * 19 17 15 23 23 C 1.52993 * 117.50058 * 85.37810 * 14 13 10 24 24 C 1.52991 * 117.49971 * 154.03882 * 14 13 10 25 25 H 1.09001 * 109.47026 * 143.97404 * 3 2 1 26 26 H 1.09003 * 109.47118 * 23.97745 * 3 2 1 27 27 H 1.08999 * 109.47474 * 34.99809 * 5 4 3 28 28 H 1.08999 * 109.47181 * 155.00176 * 5 4 3 29 29 H 1.08998 * 109.47349 * 300.00295 * 6 5 4 30 30 H 1.09007 * 109.47333 * 59.99771 * 6 5 4 31 31 H 0.96689 * 117.00208 * 180.02562 * 9 7 6 32 32 H 1.09001 * 109.47189 * 66.22458 * 13 10 4 33 33 H 1.08995 * 109.47059 * 306.22216 * 13 10 4 34 34 H 0.96997 * 120.00683 * 355.44767 * 18 17 15 35 35 H 1.09001 * 117.50089 * 215.00213 * 23 14 13 36 36 H 1.09004 * 117.50111 * 0.02562 * 23 14 13 37 37 H 1.09000 * 117.49904 * 359.97355 * 24 14 13 38 38 H 1.09001 * 117.50170 * 144.97237 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0962 0.1459 1.3736 5 6 3.2355 1.4792 1.9643 6 6 4.5921 2.0702 1.5754 7 6 4.7356 3.4415 2.1836 8 8 3.8441 3.8995 2.8584 9 8 5.8539 4.1543 1.9756 10 16 3.4907 -1.1971 2.2585 11 8 4.4486 -0.7289 3.1979 12 8 3.8367 -2.1705 1.2827 13 6 1.9487 -1.6560 3.0965 14 6 2.2207 -2.8013 4.0738 15 6 2.7553 -4.0684 3.4576 16 1 3.8198 -4.2494 3.4327 17 6 1.8856 -4.9966 2.9254 18 7 0.6044 -4.7166 2.8276 19 14 2.5272 -6.6516 2.3435 20 1 2.9110 -6.5583 0.9121 21 1 3.7139 -7.0339 3.1503 22 1 1.4667 -7.6784 2.5058 23 6 2.7161 -2.4329 5.4736 24 6 1.2856 -2.9407 5.2766 25 1 2.9709 0.8320 -0.6044 26 1 2.9717 -0.9382 -0.4176 27 1 2.4387 2.1251 1.5955 28 1 3.1695 1.4045 3.0497 29 1 5.3890 1.4244 1.9442 30 1 4.6582 2.1450 0.4899 31 1 5.9002 5.0284 2.3865 32 1 1.2146 -1.9759 2.3570 33 1 1.5625 -0.7958 3.6433 34 1 0.2606 -3.8850 3.1896 35 1 3.4288 -3.1069 5.9489 36 1 2.8479 -1.3745 5.6986 37 1 0.4769 -2.2162 5.3720 38 1 1.0568 -3.9489 5.6221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601072976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:32 Heat of formation + Delta-G solvation = -138.200093 kcal Electronic energy + Delta-G solvation = -25153.562799 eV Core-core repulsion = 21316.313603 eV Total energy + Delta-G solvation = -3837.249196 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.20769 -38.93604 -38.71408 -38.17097 -37.18719 -36.95467 -36.65211 -34.06561 -32.60057 -30.05670 -28.74862 -27.07230 -25.30668 -23.19957 -22.04077 -21.79059 -20.40451 -19.13653 -19.04461 -18.84069 -18.34149 -17.89534 -17.03351 -16.95620 -16.92587 -16.01409 -15.73228 -15.63165 -15.32928 -14.93252 -14.70755 -14.62644 -14.49282 -14.15181 -13.77724 -13.68714 -13.37967 -13.25455 -13.13627 -13.02108 -12.96463 -12.66451 -12.47645 -12.41843 -12.34132 -12.17924 -11.97729 -11.93226 -11.62536 -11.55013 -10.71392 -10.62359 -10.53936 -10.14508 -8.62910 -6.42283 -0.76288 1.27024 1.28350 1.54065 1.61061 1.72204 1.78405 1.97774 2.29288 2.54279 2.74841 2.99099 3.09050 3.12526 3.26051 3.52693 3.78470 3.84454 3.98842 4.14006 4.30865 4.36191 4.41738 4.48343 4.56064 4.58195 4.64104 4.77633 4.91967 4.95792 4.96886 5.19199 5.32952 5.37453 5.69077 5.99434 6.14956 6.46272 6.60334 7.05247 7.42935 8.77638 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.017224 B = 0.004605 C = 0.004296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.232027 B = 6078.924779 C = 6516.590492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.202 3.798 3 C 0.202 3.798 4 N -0.989 5.989 5 C 0.125 3.875 6 C -0.138 4.138 7 C 0.493 3.507 8 O -0.554 6.554 9 O -0.512 6.512 10 S 2.632 3.368 11 O -0.969 6.969 12 O -0.964 6.964 13 C -0.576 4.576 14 C -0.011 4.011 15 C -0.601 4.601 16 H 0.049 0.951 17 C -0.003 4.003 18 N -0.921 5.921 19 Si 1.096 2.904 20 H -0.273 1.273 21 H -0.269 1.269 22 H -0.281 1.281 23 C -0.174 4.174 24 C -0.166 4.166 25 H 0.193 0.807 26 H 0.148 0.852 27 H 0.110 0.890 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.428 0.572 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.268 0.732 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.456 16.571 -5.689 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.118 4.118 3 C 0.074 3.926 4 N -0.825 5.825 5 C 0.000 4.000 6 C -0.177 4.177 7 C 0.337 3.663 8 O -0.445 6.445 9 O -0.326 6.326 10 S 2.727 3.273 11 O -0.959 6.959 12 O -0.954 6.954 13 C -0.707 4.707 14 C -0.014 4.014 15 C -0.638 4.638 16 H 0.067 0.933 17 C -0.205 4.205 18 N -0.556 5.556 19 Si 0.918 3.082 20 H -0.198 1.198 21 H -0.194 1.194 22 H -0.206 1.206 23 C -0.211 4.211 24 C -0.205 4.205 25 H 0.210 0.790 26 H 0.165 0.835 27 H 0.128 0.872 28 H 0.100 0.900 29 H 0.133 0.867 30 H 0.173 0.827 31 H 0.290 0.710 32 H 0.123 0.877 33 H 0.144 0.856 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.927 14.530 -6.400 17.745 hybrid contribution -0.372 1.869 1.535 2.447 sum 7.555 16.399 -4.865 18.700 Atomic orbital electron populations 1.81240 1.15135 1.10593 1.07941 1.30623 0.96573 0.91787 0.92818 1.19535 0.78177 1.10919 0.83957 1.57738 1.80667 1.20540 1.23597 1.21254 0.97609 0.81995 0.99182 1.21873 1.00170 0.89619 1.06019 1.23404 0.78595 0.87712 0.76628 1.90746 1.42516 1.72189 1.39058 1.84496 1.40664 1.35500 1.71892 1.04433 0.76409 0.72406 0.74050 1.93496 1.57451 1.80186 1.64756 1.93512 1.82168 1.60259 1.59454 1.30148 1.21726 1.06885 1.11915 1.18681 1.02868 0.93575 0.86230 1.21598 0.94486 1.03991 1.43728 0.93301 1.26923 0.94240 1.05691 0.93674 1.70826 1.14934 1.27864 1.41927 0.83231 0.75537 0.72063 0.77367 1.19839 1.19372 1.20595 1.23118 0.96830 1.01028 1.00172 1.22733 0.92876 1.00545 1.04337 0.78970 0.83468 0.87170 0.90020 0.86680 0.82701 0.71024 0.87682 0.85565 0.92174 0.89410 0.87983 0.89431 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -15.24 18.54 20.01 0.37 -14.87 16 2 C 0.20 5.01 15.76 89.44 1.41 6.42 16 3 C 0.20 3.29 6.14 84.57 0.52 3.81 16 4 N -0.99 -21.82 2.68 -525.66 -1.41 -23.23 16 5 C 0.12 2.28 4.54 86.38 0.39 2.67 16 6 C -0.14 -1.91 6.13 29.85 0.18 -1.73 16 7 C 0.49 8.09 8.33 71.24 0.59 8.68 16 8 O -0.55 -12.95 16.74 21.97 0.37 -12.58 16 9 O -0.51 -5.87 13.42 -51.47 -0.69 -6.56 16 10 S 2.63 92.17 5.01 -56.49 -0.28 91.88 16 11 O -0.97 -35.91 16.75 -127.65 -2.14 -38.05 16 12 O -0.96 -39.65 16.03 -127.65 -2.05 -41.70 16 13 C -0.58 -23.19 5.98 71.98 0.43 -22.76 16 14 C -0.01 -0.54 0.95 -52.93 -0.05 -0.59 16 15 C -0.60 -32.68 7.89 25.60 0.20 -32.48 16 16 H 0.05 2.72 7.82 -2.91 -0.02 2.70 16 17 C 0.00 -0.17 5.39 84.66 0.46 0.29 16 18 N -0.92 -53.89 13.57 21.45 0.29 -53.60 16 19 Si 1.10 50.11 29.91 68.60 2.05 52.16 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.17 -7.27 9.95 30.61 0.30 -6.97 16 24 C -0.17 -7.40 8.74 30.61 0.27 -7.14 16 25 H 0.19 0.67 8.11 -2.39 -0.02 0.65 16 26 H 0.15 2.50 6.82 -2.39 -0.02 2.48 16 27 H 0.11 1.62 8.07 -2.39 -0.02 1.60 16 28 H 0.08 1.78 7.56 -2.39 -0.02 1.76 16 29 H 0.12 1.85 7.90 -2.39 -0.02 1.83 16 30 H 0.16 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.43 1.54 9.10 -74.06 -0.67 0.86 16 32 H 0.10 4.62 7.79 -2.39 -0.02 4.60 16 33 H 0.13 4.25 8.11 -2.39 -0.02 4.23 16 34 H 0.27 15.56 6.17 -92.71 -0.57 14.99 16 35 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.10 3.68 8.14 -2.38 -0.02 3.66 16 37 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 38 H 0.07 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -81.52 351.92 1.85 -79.67 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.62 Total: 16.67 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 4.71 Total: -49.79 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -0.74 Total: -91.70 kcal Atomic # 8 Polarization: -94.38 SS G_CDS: -4.51 Total: -98.89 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Atomic # 16 Polarization: 92.17 SS G_CDS: -0.28 Total: 91.88 kcal Total: -81.52 1.85 -79.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.528 kcal (2) G-P(sol) polarization free energy of solvation -81.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds