Wall clock time and date at job start Tue Mar 31 2020 11:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48499 * 109.47084 * 275.40931 * 3 2 1 5 5 H 1.48504 * 109.47378 * 35.40915 * 3 2 1 6 6 H 1.48498 * 109.47248 * 155.41269 * 3 2 1 7 7 C 1.39934 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00369 * 341.73167 * 7 2 1 9 9 C 1.41441 * 119.99887 * 161.73560 * 7 2 1 10 10 C 1.40779 * 120.17874 * 330.17377 * 9 7 2 11 11 C 1.37714 * 120.04146 * 179.97438 * 10 9 7 12 12 C 1.38366 * 120.41069 * 359.79018 * 11 10 9 13 13 C 1.39880 * 120.35660 * 0.47088 * 12 11 10 14 14 C 1.47888 * 120.02496 * 179.78670 * 13 12 11 15 15 O 1.21543 * 120.00438 * 179.71910 * 14 13 12 16 16 N 1.34782 * 119.99883 * 359.72043 * 14 13 12 17 17 C 1.46502 * 119.99879 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46726 * 180.02562 * 17 16 14 19 19 N 1.29919 * 125.37415 * 90.00353 * 18 17 16 20 20 C 1.36096 * 108.47531 * 179.97438 * 19 18 17 21 21 C 1.47275 * 126.45801 * 179.97438 * 20 19 18 22 22 O 1.21538 * 120.00344 * 180.02562 * 21 20 19 23 23 O 1.34781 * 119.99879 * 0.02738 * 21 20 19 24 24 C 1.36175 * 107.08327 * 0.02562 * 20 19 18 25 25 O 1.34064 * 125.36638 * 269.96969 * 18 17 16 26 26 C 1.39033 * 119.95096 * 359.50418 * 13 12 11 27 27 H 0.97005 * 120.00389 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97848 * 0.02850 * 10 9 7 29 29 H 1.08002 * 119.79243 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.82230 * 180.23145 * 12 11 10 31 31 H 0.97003 * 120.00041 * 0.02562 * 16 14 13 32 32 H 1.08995 * 109.46842 * 59.99793 * 17 16 14 33 33 H 1.08997 * 109.47286 * 299.99879 * 17 16 14 34 34 H 0.96708 * 116.99754 * 179.97438 * 23 21 20 35 35 H 1.08004 * 126.52401 * 179.73401 * 24 20 19 36 36 H 1.08003 * 120.19832 * 180.23503 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5923 1.4098 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3689 -1.2429 -0.3833 10 6 3.8625 -0.3111 -1.3161 11 6 5.1882 -0.3436 -1.6874 12 6 6.0444 -1.2860 -1.1458 13 6 5.5707 -2.2232 -0.2218 14 6 6.4913 -3.2302 0.3489 15 8 6.0804 -4.0412 1.1556 16 7 7.7859 -3.2487 -0.0256 17 6 8.6977 -4.2466 0.5394 18 6 10.0758 -4.0520 -0.0386 19 7 11.0011 -3.2905 0.4631 20 6 12.1034 -3.3709 -0.3311 21 6 13.3810 -2.6668 -0.1288 22 8 14.2934 -2.8249 -0.9161 23 8 13.5386 -1.8470 0.9294 24 6 11.8019 -4.2241 -1.3486 25 8 10.5404 -4.6378 -1.1513 26 6 4.2352 -2.2037 0.1642 27 1 -0.4851 0.8401 -0.0004 28 1 3.2013 0.4301 -1.7400 29 1 5.5628 0.3734 -2.4030 30 1 7.0832 -1.3004 -1.4410 31 1 8.1139 -2.6012 -0.6691 32 1 8.3386 -5.2463 0.2951 33 1 8.7385 -4.1297 1.6223 34 1 14.3950 -1.4072 1.0204 35 1 12.4527 -4.5103 -2.1617 36 1 3.8661 -2.9231 0.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:05 Heat of formation + Delta-G solvation = -78.632124 kcal Electronic energy + Delta-G solvation = -24241.578474 eV Core-core repulsion = 20271.468388 eV Total energy + Delta-G solvation = -3970.110086 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.05109 -40.40627 -39.59081 -37.43546 -36.57634 -35.58192 -34.91310 -33.74105 -31.65392 -30.55311 -30.07212 -27.42271 -25.65467 -25.19418 -23.12453 -22.29609 -21.32860 -20.73124 -20.23216 -18.96330 -18.36217 -17.81833 -17.46418 -16.83705 -16.48782 -16.04534 -15.72815 -15.66885 -15.16720 -14.73865 -14.39762 -14.15262 -13.80056 -13.72177 -13.46387 -12.94804 -12.82623 -12.78220 -12.18776 -12.06469 -11.84791 -11.66746 -11.45338 -11.27741 -11.10266 -10.84263 -10.60531 -10.08641 -9.90356 -9.74867 -9.48757 -9.22107 -9.16446 -7.93999 -7.82077 -7.04735 -4.59922 0.37816 1.22350 1.80739 1.92330 2.37332 2.46491 2.50321 3.02613 3.14857 3.22676 3.23596 3.47298 3.50978 3.89653 4.10032 4.42299 4.58899 4.83240 4.86887 5.08106 5.21293 5.27008 5.40453 5.48891 5.80205 5.90774 5.95579 6.29321 6.32794 6.60064 6.62059 6.89960 6.91360 7.13518 7.32515 7.40442 7.43333 7.57301 7.70633 7.90380 8.23520 8.46033 8.49149 8.66611 9.97203 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.002525 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.289315 B =11084.320001 C =11685.725648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.083 3.917 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.220 4.220 11 C -0.082 4.082 12 C -0.216 4.216 13 C -0.108 4.108 14 C 0.572 3.428 15 O -0.540 6.540 16 N -0.734 5.734 17 C 0.219 3.781 18 C 0.190 3.810 19 N -0.422 5.422 20 C -0.067 4.067 21 C 0.578 3.422 22 O -0.510 6.510 23 O -0.492 6.492 24 C 0.041 3.959 25 O -0.182 6.182 26 C -0.133 4.133 27 H 0.287 0.713 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.405 0.595 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.418 0.582 35 H 0.238 0.762 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.738 -4.087 -2.424 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.137 4.137 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.166 1.166 7 C -0.469 4.469 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.240 4.240 11 C -0.100 4.100 12 C -0.236 4.236 13 C -0.111 4.111 14 C 0.363 3.637 15 O -0.418 6.418 16 N -0.390 5.390 17 C 0.095 3.905 18 C -0.019 4.019 19 N -0.152 5.152 20 C -0.185 4.185 21 C 0.421 3.579 22 O -0.399 6.399 23 O -0.302 6.302 24 C -0.034 4.034 25 O -0.067 6.067 26 C -0.153 4.153 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.113 0.887 31 H 0.241 0.759 32 H 0.120 0.880 33 H 0.133 0.867 34 H 0.276 0.724 35 H 0.254 0.746 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.926 -4.489 -1.498 21.455 hybrid contribution 1.242 1.068 -0.996 1.917 sum 22.169 -3.421 -2.494 22.569 Atomic orbital electron populations 1.69688 1.08111 1.30470 1.34239 1.26177 0.94766 1.01794 0.90924 0.86314 0.81421 0.79706 0.78895 1.19538 1.21595 1.16628 1.19530 0.92895 0.96360 1.38106 0.88754 1.17696 0.93172 0.91082 0.90234 1.21195 0.95686 1.04255 1.02829 1.20508 0.93720 0.97306 0.98504 1.20363 0.97889 1.00764 1.04623 1.19309 0.94087 0.96982 1.00734 1.18777 0.80599 0.83988 0.80356 1.90727 1.76463 1.40531 1.34068 1.45908 1.09388 1.35572 1.48166 1.19559 0.77334 0.95007 0.98618 1.26385 0.98360 0.92970 0.84232 1.70960 0.98805 1.18111 1.27321 1.20579 0.94569 1.05704 0.97692 1.19018 0.84841 0.75891 0.78141 1.90966 1.41273 1.62660 1.45035 1.84681 1.43248 1.56603 1.45684 1.25440 0.83462 0.94728 0.99729 1.84504 1.25640 1.56360 1.40147 1.21271 0.90917 1.01930 1.01225 0.90248 0.87827 0.88246 0.88747 0.75860 0.87982 0.86686 0.72359 0.74567 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.75 13.93 55.55 0.77 -19.97 16 2 C 0.08 2.11 5.40 -17.35 -0.09 2.02 16 3 Si 0.91 19.98 24.52 -169.99 -4.17 15.81 16 4 H -0.27 -5.67 6.71 56.52 0.38 -5.29 16 5 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.24 -5.47 6.86 56.52 0.39 -5.08 16 7 C -0.44 -11.57 9.57 -37.73 -0.36 -11.93 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 9 C 0.08 1.99 5.10 -106.87 -0.55 1.44 16 10 C -0.22 -5.00 7.17 -38.81 -0.28 -5.27 16 11 C -0.08 -1.63 10.01 -39.73 -0.40 -2.02 16 12 C -0.22 -4.03 9.55 -38.92 -0.37 -4.40 16 13 C -0.11 -2.19 5.87 -105.04 -0.62 -2.81 16 14 C 0.57 10.35 7.77 -12.31 -0.10 10.25 16 15 O -0.54 -11.13 16.33 5.33 0.09 -11.04 16 16 N -0.73 -9.96 5.50 -62.42 -0.34 -10.31 16 17 C 0.22 2.40 6.30 -5.19 -0.03 2.37 16 18 C 0.19 1.98 7.67 -13.09 -0.10 1.88 16 19 N -0.42 -4.95 11.36 -7.67 -0.09 -5.03 16 20 C -0.07 -0.67 7.04 -83.04 -0.58 -1.26 16 21 C 0.58 5.59 8.33 34.40 0.29 5.88 16 22 O -0.51 -5.55 17.68 -19.30 -0.34 -5.89 16 23 O -0.49 -3.97 13.44 -40.71 -0.55 -4.52 16 24 C 0.04 0.31 11.95 29.99 0.36 0.67 16 25 O -0.18 -1.63 10.72 6.56 0.07 -1.56 16 26 C -0.13 -3.08 9.34 -38.44 -0.36 -3.44 16 27 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 28 H 0.10 2.34 4.72 -52.49 -0.25 2.09 16 29 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.09 1.42 6.38 -52.49 -0.33 1.09 16 31 H 0.41 4.97 6.48 -40.82 -0.26 4.71 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.42 1.14 9.11 45.56 0.42 1.55 16 35 H 0.24 0.85 8.06 -52.48 -0.42 0.42 16 36 H 0.12 2.74 7.64 -52.48 -0.40 2.34 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -31.99 328.30 -4.92 -36.91 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -2.12 Total: 7.29 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.19 Total: -6.62 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.34 Total: -35.31 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.73 Total: -23.02 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.17 Total: 15.81 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.99 -4.92 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.722 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds