Wall clock time and date at job start Tue Mar 31 2020 11:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86798 * 120.00068 * 2 1 4 4 H 1.48499 * 109.47084 * 275.40931 * 3 2 1 5 5 H 1.48504 * 109.47378 * 35.40915 * 3 2 1 6 6 H 1.48498 * 109.47248 * 155.41269 * 3 2 1 7 7 C 1.39934 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00369 * 341.73167 * 7 2 1 9 9 C 1.41441 * 119.99887 * 161.73560 * 7 2 1 10 10 C 1.40779 * 120.17874 * 330.17377 * 9 7 2 11 11 C 1.37714 * 120.04146 * 179.97438 * 10 9 7 12 12 C 1.38366 * 120.41069 * 359.79018 * 11 10 9 13 13 C 1.39880 * 120.35660 * 0.47088 * 12 11 10 14 14 C 1.47888 * 120.02496 * 179.78670 * 13 12 11 15 15 O 1.21543 * 120.00438 * 179.71910 * 14 13 12 16 16 N 1.34782 * 119.99883 * 359.72043 * 14 13 12 17 17 C 1.46502 * 119.99879 * 180.02562 * 16 14 13 18 18 C 1.50700 * 109.46726 * 180.02562 * 17 16 14 19 19 N 1.29919 * 125.37415 * 90.00353 * 18 17 16 20 20 C 1.36096 * 108.47531 * 179.97438 * 19 18 17 21 21 C 1.47275 * 126.45801 * 179.97438 * 20 19 18 22 22 O 1.21538 * 120.00344 * 180.02562 * 21 20 19 23 23 O 1.34781 * 119.99879 * 0.02738 * 21 20 19 24 24 C 1.36175 * 107.08327 * 0.02562 * 20 19 18 25 25 O 1.34064 * 125.36638 * 269.96969 * 18 17 16 26 26 C 1.39033 * 119.95096 * 359.50418 * 13 12 11 27 27 H 0.97005 * 120.00389 * 0.02562 * 1 2 3 28 28 H 1.08000 * 119.97848 * 0.02850 * 10 9 7 29 29 H 1.08002 * 119.79243 * 180.02562 * 11 10 9 30 30 H 1.08002 * 119.82230 * 180.23145 * 12 11 10 31 31 H 0.97003 * 120.00041 * 0.02562 * 16 14 13 32 32 H 1.08995 * 109.46842 * 59.99793 * 17 16 14 33 33 H 1.08997 * 109.47286 * 299.99879 * 17 16 14 34 34 H 0.96708 * 116.99754 * 179.97438 * 23 21 20 35 35 H 1.08004 * 126.52401 * 179.73401 * 24 20 19 36 36 H 1.08003 * 120.19832 * 180.23503 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3755 2.1124 -1.3938 5 1 1.5016 2.6170 0.8112 6 1 3.5923 1.4098 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3689 -1.2429 -0.3833 10 6 3.8625 -0.3111 -1.3161 11 6 5.1882 -0.3436 -1.6874 12 6 6.0444 -1.2860 -1.1458 13 6 5.5707 -2.2232 -0.2218 14 6 6.4913 -3.2302 0.3489 15 8 6.0804 -4.0412 1.1556 16 7 7.7859 -3.2487 -0.0256 17 6 8.6977 -4.2466 0.5394 18 6 10.0758 -4.0520 -0.0386 19 7 11.0011 -3.2905 0.4631 20 6 12.1034 -3.3709 -0.3311 21 6 13.3810 -2.6668 -0.1288 22 8 14.2934 -2.8249 -0.9161 23 8 13.5386 -1.8470 0.9294 24 6 11.8019 -4.2241 -1.3486 25 8 10.5404 -4.6378 -1.1513 26 6 4.2352 -2.2037 0.1642 27 1 -0.4851 0.8401 -0.0004 28 1 3.2013 0.4301 -1.7400 29 1 5.5628 0.3734 -2.4030 30 1 7.0832 -1.3004 -1.4410 31 1 8.1139 -2.6012 -0.6691 32 1 8.3386 -5.2463 0.2951 33 1 8.7385 -4.1297 1.6223 34 1 14.3950 -1.4072 1.0204 35 1 12.4527 -4.5103 -2.1617 36 1 3.8661 -2.9231 0.8802 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077391.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:04 Heat of formation + Delta-G solvation = -105.281824 kcal Electronic energy + Delta-G solvation = -24242.734092 eV Core-core repulsion = 20271.468388 eV Total energy + Delta-G solvation = -3971.265704 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.75899 -41.11335 -41.01537 -39.09434 -37.23380 -36.49196 -35.95994 -35.54508 -32.92699 -31.99932 -31.61083 -28.47556 -26.98542 -26.29841 -24.58908 -23.10633 -22.48611 -22.03323 -21.71295 -19.90638 -19.50332 -18.74987 -18.25073 -18.10784 -17.48387 -17.28509 -17.11136 -16.55603 -16.44675 -16.32330 -15.56593 -15.38419 -15.11248 -14.76200 -14.56490 -14.44035 -14.31306 -14.05061 -13.75367 -13.33923 -12.87190 -12.83926 -12.67114 -12.58189 -12.31245 -12.18592 -12.00989 -11.76900 -11.56595 -11.26400 -10.96650 -10.38514 -10.37529 -9.62606 -9.57030 -8.90783 -6.54193 -0.25426 0.16231 0.43429 0.74773 1.23967 1.26465 1.42466 1.49155 1.73500 1.80366 1.91834 2.12710 2.22238 2.64199 2.66501 3.45623 3.49143 3.80318 3.97421 4.10913 4.24323 4.27558 4.39250 4.40605 4.51965 4.60148 4.72508 4.88624 4.92330 5.11059 5.17463 5.36116 5.42545 5.63681 5.71858 5.85790 6.08530 6.20247 6.30196 6.41156 6.66034 6.75397 6.86302 7.09867 8.18029 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.023577 B = 0.002525 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.289315 B =11084.320001 C =11685.725648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.966 3.034 4 H -0.248 1.248 5 H -0.279 1.279 6 H -0.251 1.251 7 C -0.487 4.487 8 H 0.052 0.948 9 C 0.065 3.935 10 C -0.225 4.225 11 C -0.083 4.083 12 C -0.183 4.183 13 C -0.112 4.112 14 C 0.574 3.426 15 O -0.572 6.572 16 N -0.713 5.713 17 C 0.221 3.779 18 C 0.186 3.814 19 N -0.443 5.443 20 C -0.099 4.099 21 C 0.582 3.418 22 O -0.528 6.528 23 O -0.498 6.498 24 C 0.074 3.926 25 O -0.180 6.180 26 C -0.161 4.161 27 H 0.295 0.705 28 H 0.105 0.895 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.415 0.585 32 H 0.116 0.884 33 H 0.116 0.884 34 H 0.437 0.563 35 H 0.277 0.723 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.916 -3.063 -4.365 26.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.169 4.169 3 Si 0.788 3.212 4 H -0.173 1.173 5 H -0.205 1.205 6 H -0.174 1.174 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.062 3.938 10 C -0.244 4.244 11 C -0.101 4.101 12 C -0.202 4.202 13 C -0.115 4.115 14 C 0.364 3.636 15 O -0.452 6.452 16 N -0.368 5.368 17 C 0.097 3.903 18 C -0.024 4.024 19 N -0.174 5.174 20 C -0.217 4.217 21 C 0.426 3.574 22 O -0.419 6.419 23 O -0.312 6.312 24 C -0.001 4.001 25 O -0.064 6.064 26 C -0.182 4.182 27 H 0.105 0.895 28 H 0.123 0.877 29 H 0.162 0.838 30 H 0.162 0.838 31 H 0.253 0.747 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.300 0.700 35 H 0.292 0.708 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 25.155 -3.456 -3.454 25.625 hybrid contribution 0.288 0.609 -0.446 0.808 sum 25.443 -2.847 -3.901 25.897 Atomic orbital electron populations 1.69723 1.09302 1.31616 1.36802 1.26884 0.95401 1.04347 0.90295 0.85486 0.79636 0.76100 0.79961 1.17281 1.20543 1.17441 1.19468 0.94498 0.95751 1.41879 0.92938 1.17781 0.92551 0.92381 0.91064 1.21394 0.97379 1.03498 1.02132 1.21016 0.92348 0.98065 0.98685 1.20964 1.00031 0.97932 1.01301 1.19599 0.93345 0.97839 1.00726 1.18403 0.81765 0.83254 0.80170 1.90724 1.77362 1.41577 1.35503 1.45647 1.08044 1.35813 1.47302 1.19609 0.77293 0.94763 0.98632 1.25976 0.97883 0.93597 0.84934 1.70896 0.99643 1.18640 1.28187 1.20827 0.94600 1.07501 0.98799 1.18986 0.84581 0.75740 0.78068 1.90957 1.41767 1.63458 1.45705 1.84643 1.45014 1.56417 1.45089 1.26217 0.82656 0.92120 0.99110 1.84526 1.26284 1.56137 1.39493 1.21216 0.92637 1.02192 1.02140 0.89469 0.87692 0.83762 0.83791 0.74721 0.86578 0.86665 0.70008 0.70758 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.38 13.93 21.82 0.30 -46.07 16 2 C 0.05 2.41 5.40 85.25 0.46 2.87 16 3 Si 0.97 41.25 24.52 68.60 1.68 42.93 16 4 H -0.25 -9.65 6.71 99.48 0.67 -8.98 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.25 -10.87 6.86 99.48 0.68 -10.19 16 7 C -0.49 -27.44 9.57 23.47 0.22 -27.22 16 8 H 0.05 3.24 8.06 -2.91 -0.02 3.22 16 9 C 0.06 3.26 5.10 -21.32 -0.11 3.15 16 10 C -0.22 -9.84 7.17 22.77 0.16 -9.68 16 11 C -0.08 -2.92 10.01 22.18 0.22 -2.70 16 12 C -0.18 -5.96 9.55 22.70 0.22 -5.74 16 13 C -0.11 -4.36 5.87 -20.13 -0.12 -4.47 16 14 C 0.57 19.78 7.77 86.80 0.67 20.46 16 15 O -0.57 -23.44 16.33 -3.85 -0.06 -23.51 16 16 N -0.71 -17.03 5.50 -469.67 -2.58 -19.61 16 17 C 0.22 4.25 6.30 85.63 0.54 4.79 16 18 C 0.19 3.30 7.67 88.39 0.68 3.98 16 19 N -0.44 -9.21 11.36 -293.09 -3.33 -12.54 16 20 C -0.10 -1.71 7.04 40.38 0.28 -1.43 16 21 C 0.58 9.91 8.33 70.20 0.58 10.49 16 22 O -0.53 -10.23 17.68 19.71 0.35 -9.88 16 23 O -0.50 -7.02 13.44 -56.92 -0.77 -7.79 16 24 C 0.07 0.82 11.95 67.34 0.80 1.62 16 25 O -0.18 -2.56 10.72 0.56 0.01 -2.55 16 26 C -0.16 -7.69 9.34 23.01 0.21 -7.48 16 27 H 0.29 14.38 8.30 -92.70 -0.77 13.61 16 28 H 0.11 4.54 4.72 -2.91 -0.01 4.53 16 29 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 30 H 0.14 3.32 6.38 -2.91 -0.02 3.30 16 31 H 0.41 8.20 6.48 -92.71 -0.60 7.60 16 32 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.44 1.50 9.11 -74.05 -0.67 0.82 16 35 H 0.28 0.59 8.06 -2.91 -0.02 0.57 16 36 H 0.10 4.82 7.64 -2.91 -0.02 4.80 16 Total: -1.00 -73.92 328.30 0.29 -73.63 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.15 Total: 16.75 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.84 Total: -11.36 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -5.61 Total: -78.22 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.47 Total: -43.73 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 1.68 Total: 42.93 kcal Total: -73.92 0.29 -73.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077391.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.649 kcal (2) G-P(sol) polarization free energy of solvation -73.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds