Wall clock time and date at job start Tue Mar 31 2020 11:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48512 * 109.46913 * 275.41196 * 3 2 1 5 5 H 1.48498 * 109.47438 * 35.41183 * 3 2 1 6 6 H 1.48498 * 109.47382 * 155.41439 * 3 2 1 7 7 C 1.39934 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00153 * 341.73578 * 7 2 1 9 9 C 1.41434 * 119.99678 * 161.73408 * 7 2 1 10 10 C 1.40782 * 120.17993 * 330.17572 * 9 7 2 11 11 C 1.37714 * 120.04108 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41150 * 359.69862 * 11 10 9 13 13 C 1.39876 * 120.35877 * 0.55935 * 12 11 10 14 14 C 1.47884 * 120.02572 * 179.74081 * 13 12 11 15 15 O 1.21552 * 119.99789 * 179.71849 * 14 13 12 16 16 N 1.34771 * 119.99995 * 359.72764 * 14 13 12 17 17 C 1.46505 * 119.99856 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46805 * 179.97438 * 17 16 14 19 19 O 1.34226 * 126.53406 * 269.97265 * 18 17 16 20 20 C 1.34059 * 108.24426 * 180.02562 * 19 18 17 21 21 N 1.29917 * 109.25896 * 0.02562 * 20 19 18 22 22 C 1.36102 * 108.47923 * 359.97438 * 21 20 19 23 23 C 1.47270 * 126.46362 * 179.97438 * 22 21 20 24 24 O 1.21535 * 119.99964 * 180.02562 * 23 22 21 25 25 O 1.34773 * 120.00131 * 0.02562 * 23 22 21 26 26 C 1.39039 * 119.94632 * 359.46669 * 13 12 11 27 27 H 0.97004 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.98273 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.79272 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.81598 * 180.27887 * 12 11 10 31 31 H 0.97001 * 120.00157 * 359.97438 * 16 14 13 32 32 H 1.09001 * 109.46951 * 59.99577 * 17 16 14 33 33 H 1.08996 * 109.47039 * 299.99496 * 17 16 14 34 34 H 1.07995 * 125.37030 * 179.97438 * 20 19 18 35 35 H 0.96702 * 117.00328 * 179.97438 * 25 23 22 36 36 H 1.07996 * 120.19689 * 180.23206 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3940 5 1 1.5017 2.6170 0.8112 6 1 3.5924 1.4099 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3688 -1.2429 -0.3834 10 6 3.8625 -0.3111 -1.3161 11 6 5.1879 -0.3442 -1.6883 12 6 6.0444 -1.2861 -1.1461 13 6 5.5708 -2.2234 -0.2220 14 6 6.4913 -3.2304 0.3485 15 8 6.0804 -4.0414 1.1553 16 7 7.7858 -3.2488 -0.0260 17 6 8.6979 -4.2461 0.5396 18 6 10.0756 -4.0525 -0.0395 19 8 10.5638 -4.6276 -1.1497 20 6 11.8222 -4.2001 -1.3253 21 7 12.1345 -3.3816 -0.3660 22 6 11.0628 -3.2613 0.4644 23 6 10.9857 -2.4325 1.6793 24 8 9.9643 -2.4129 2.3377 25 8 12.0477 -1.6958 2.0611 26 6 4.2352 -2.2038 0.1639 27 1 -0.4850 0.8401 -0.0004 28 1 3.2013 0.4302 -1.7401 29 1 5.5623 0.3723 -2.4045 30 1 7.0831 -1.3005 -1.4414 31 1 8.1137 -2.6018 -0.6701 32 1 8.3390 -5.2462 0.2962 33 1 8.7387 -4.1284 1.6224 34 1 12.4739 -4.4909 -2.1359 35 1 11.9494 -1.1676 2.8651 36 1 3.8661 -2.9232 0.8799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:01 Heat of formation + Delta-G solvation = -76.805049 kcal Electronic energy + Delta-G solvation = -24926.813319 eV Core-core repulsion = 20956.782461 eV Total energy + Delta-G solvation = -3970.030858 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.02346 -40.26687 -39.51245 -37.40472 -36.46658 -35.38910 -34.99073 -33.72217 -31.66898 -30.49193 -30.02500 -27.34711 -25.30608 -24.88979 -23.17065 -22.58608 -21.27381 -20.70966 -20.17907 -18.85043 -18.25417 -17.82467 -17.41419 -16.59570 -16.18726 -15.81950 -15.73932 -15.67379 -15.36856 -14.71550 -14.60118 -13.92867 -13.69198 -13.67338 -13.35716 -12.89923 -12.79168 -12.76034 -12.10807 -12.04329 -11.74432 -11.64687 -11.31818 -11.10472 -11.06907 -10.81636 -10.58103 -10.06337 -9.87643 -9.72075 -9.42513 -9.17422 -9.04950 -7.91070 -7.79596 -7.02982 -4.57916 0.34896 1.44196 1.85386 1.92029 2.48575 2.54013 2.60363 3.03806 3.16174 3.24588 3.41680 3.54696 3.59945 3.91386 3.97444 4.44885 4.60952 4.75513 4.90900 5.24408 5.30392 5.40893 5.52044 5.57312 5.82225 5.97853 6.10050 6.34763 6.38252 6.62646 6.64811 6.89352 6.93770 7.16379 7.35629 7.45704 7.54874 7.63477 7.72892 7.93631 8.25558 8.49614 8.55920 8.68752 9.99074 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.003003 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.095310 B = 9320.797335 C = 9578.225655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.084 3.916 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.243 1.243 7 C -0.441 4.441 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.221 4.221 11 C -0.082 4.082 12 C -0.217 4.217 13 C -0.107 4.107 14 C 0.572 3.428 15 O -0.540 6.540 16 N -0.729 5.729 17 C 0.197 3.803 18 C 0.042 3.958 19 O -0.185 6.185 20 C 0.188 3.812 21 N -0.449 5.449 22 C -0.040 4.040 23 C 0.567 3.433 24 O -0.488 6.488 25 O -0.496 6.496 26 C -0.134 4.134 27 H 0.287 0.713 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.402 0.598 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.262 0.738 35 H 0.418 0.582 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.024 -4.028 -2.413 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.136 4.136 3 Si 0.736 3.264 4 H -0.195 1.195 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.469 4.469 8 H 0.112 0.888 9 C 0.079 3.921 10 C -0.240 4.240 11 C -0.100 4.100 12 C -0.237 4.237 13 C -0.110 4.110 14 C 0.362 3.638 15 O -0.418 6.418 16 N -0.385 5.385 17 C 0.074 3.926 18 C -0.015 4.015 19 O -0.070 6.070 20 C -0.041 4.041 21 N -0.177 5.177 22 C -0.159 4.159 23 C 0.409 3.591 24 O -0.375 6.375 25 O -0.308 6.308 26 C -0.154 4.154 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.238 0.762 32 H 0.112 0.888 33 H 0.138 0.862 34 H 0.277 0.723 35 H 0.277 0.723 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 21.766 -4.477 -1.900 22.303 hybrid contribution 0.042 1.124 -0.144 1.134 sum 21.808 -3.352 -2.044 22.159 Atomic orbital electron populations 1.69692 1.08107 1.30438 1.34374 1.26170 0.94755 1.01769 0.90908 0.86319 0.81430 0.79726 0.78884 1.19530 1.21591 1.16654 1.19527 0.92901 0.96367 1.38147 0.88764 1.17691 0.93152 0.91049 0.90207 1.21186 0.95679 1.04274 1.02878 1.20503 0.93730 0.97303 0.98512 1.20355 0.97838 1.00820 1.04659 1.19330 0.94106 0.96932 1.00595 1.18754 0.80657 0.83989 0.80357 1.90720 1.76471 1.40589 1.33991 1.45828 1.09306 1.35498 1.47844 1.19866 0.78925 0.94802 0.99041 1.23754 0.97458 0.94230 0.86054 1.84474 1.28819 1.56223 1.37522 1.28282 0.82075 0.93814 0.99906 1.70916 1.27051 1.16455 1.03315 1.20296 0.92062 1.04636 0.98939 1.19015 0.80741 0.77013 0.82348 1.91042 1.30733 1.62471 1.53227 1.84619 1.41162 1.57087 1.47888 1.21275 0.90930 1.01950 1.01222 0.90270 0.87830 0.88259 0.88839 0.76188 0.88833 0.86219 0.72267 0.72298 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.05 13.93 55.55 0.77 -20.27 16 2 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 3 Si 0.91 20.29 24.52 -169.99 -4.17 16.13 16 4 H -0.27 -5.75 6.71 56.52 0.38 -5.37 16 5 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.24 -5.58 6.86 56.52 0.39 -5.20 16 7 C -0.44 -11.79 9.57 -37.73 -0.36 -12.16 16 8 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 9 C 0.08 2.05 5.10 -106.87 -0.55 1.51 16 10 C -0.22 -5.11 7.17 -38.81 -0.28 -5.39 16 11 C -0.08 -1.67 10.01 -39.72 -0.40 -2.07 16 12 C -0.22 -4.19 9.55 -38.92 -0.37 -4.56 16 13 C -0.11 -2.27 5.87 -105.04 -0.62 -2.88 16 14 C 0.57 11.12 7.77 -12.31 -0.10 11.03 16 15 O -0.54 -11.93 16.33 5.32 0.09 -11.84 16 16 N -0.73 -10.92 5.50 -62.42 -0.34 -11.26 16 17 C 0.20 2.49 5.66 -5.19 -0.03 2.46 16 18 C 0.04 0.46 6.81 -35.05 -0.24 0.22 16 19 O -0.19 -1.63 10.72 6.57 0.07 -1.56 16 20 C 0.19 1.26 13.19 51.95 0.69 1.95 16 21 N -0.45 -4.58 11.36 -11.50 -0.13 -4.71 16 22 C -0.04 -0.46 7.04 -83.04 -0.58 -1.04 16 23 C 0.57 6.71 8.33 34.40 0.29 7.00 16 24 O -0.49 -6.96 15.59 -19.29 -0.30 -7.26 16 25 O -0.50 -4.58 13.44 -40.69 -0.55 -5.12 16 26 C -0.13 -3.19 9.34 -38.44 -0.36 -3.55 16 27 H 0.29 6.78 8.30 -40.82 -0.34 6.44 16 28 H 0.10 2.38 4.72 -52.49 -0.25 2.13 16 29 H 0.10 1.71 8.06 -52.48 -0.42 1.29 16 30 H 0.09 1.48 6.38 -52.49 -0.33 1.14 16 31 H 0.40 5.37 6.48 -40.82 -0.26 5.11 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.12 1.66 6.48 -51.93 -0.34 1.32 16 34 H 0.26 0.27 8.06 -52.49 -0.42 -0.15 16 35 H 0.42 1.81 9.11 45.56 0.42 2.22 16 36 H 0.12 2.83 7.64 -52.49 -0.40 2.43 16 LS Contribution 324.31 15.07 4.89 4.89 Total: -1.00 -33.31 324.31 -4.70 -38.01 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -2.03 Total: 8.44 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -3.00 Total: -5.44 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.30 Total: -36.25 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.69 Total: -25.79 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.13 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.31 -4.70 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.791 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds