Wall clock time and date at job start Tue Mar 31 2020 11:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 119.99958 * 2 1 4 4 H 1.48512 * 109.46913 * 275.41196 * 3 2 1 5 5 H 1.48498 * 109.47438 * 35.41183 * 3 2 1 6 6 H 1.48498 * 109.47382 * 155.41439 * 3 2 1 7 7 C 1.39934 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00153 * 341.73578 * 7 2 1 9 9 C 1.41434 * 119.99678 * 161.73408 * 7 2 1 10 10 C 1.40782 * 120.17993 * 330.17572 * 9 7 2 11 11 C 1.37714 * 120.04108 * 180.02562 * 10 9 7 12 12 C 1.38372 * 120.41150 * 359.69862 * 11 10 9 13 13 C 1.39876 * 120.35877 * 0.55935 * 12 11 10 14 14 C 1.47884 * 120.02572 * 179.74081 * 13 12 11 15 15 O 1.21552 * 119.99789 * 179.71849 * 14 13 12 16 16 N 1.34771 * 119.99995 * 359.72764 * 14 13 12 17 17 C 1.46505 * 119.99856 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.46805 * 179.97438 * 17 16 14 19 19 O 1.34226 * 126.53406 * 269.97265 * 18 17 16 20 20 C 1.34059 * 108.24426 * 180.02562 * 19 18 17 21 21 N 1.29917 * 109.25896 * 0.02562 * 20 19 18 22 22 C 1.36102 * 108.47923 * 359.97438 * 21 20 19 23 23 C 1.47270 * 126.46362 * 179.97438 * 22 21 20 24 24 O 1.21535 * 119.99964 * 180.02562 * 23 22 21 25 25 O 1.34773 * 120.00131 * 0.02562 * 23 22 21 26 26 C 1.39039 * 119.94632 * 359.46669 * 13 12 11 27 27 H 0.97004 * 120.00104 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.98273 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.79272 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.81598 * 180.27887 * 12 11 10 31 31 H 0.97001 * 120.00157 * 359.97438 * 16 14 13 32 32 H 1.09001 * 109.46951 * 59.99577 * 17 16 14 33 33 H 1.08996 * 109.47039 * 299.99496 * 17 16 14 34 34 H 1.07995 * 125.37030 * 179.97438 * 20 19 18 35 35 H 0.96702 * 117.00328 * 179.97438 * 25 23 22 36 36 H 1.07996 * 120.19689 * 180.23206 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1124 -1.3940 5 1 1.5017 2.6170 0.8112 6 1 3.5924 1.4099 0.5825 7 6 2.0079 -1.2119 0.0005 8 1 1.5087 -2.1235 0.2941 9 6 3.3688 -1.2429 -0.3834 10 6 3.8625 -0.3111 -1.3161 11 6 5.1879 -0.3442 -1.6883 12 6 6.0444 -1.2861 -1.1461 13 6 5.5708 -2.2234 -0.2220 14 6 6.4913 -3.2304 0.3485 15 8 6.0804 -4.0414 1.1553 16 7 7.7858 -3.2488 -0.0260 17 6 8.6979 -4.2461 0.5396 18 6 10.0756 -4.0525 -0.0395 19 8 10.5638 -4.6276 -1.1497 20 6 11.8222 -4.2001 -1.3253 21 7 12.1345 -3.3816 -0.3660 22 6 11.0628 -3.2613 0.4644 23 6 10.9857 -2.4325 1.6793 24 8 9.9643 -2.4129 2.3377 25 8 12.0477 -1.6958 2.0611 26 6 4.2352 -2.2038 0.1639 27 1 -0.4850 0.8401 -0.0004 28 1 3.2013 0.4302 -1.7401 29 1 5.5623 0.3723 -2.4045 30 1 7.0831 -1.3005 -1.4414 31 1 8.1137 -2.6018 -0.6701 32 1 8.3390 -5.2462 0.2962 33 1 8.7387 -4.1284 1.6224 34 1 12.4739 -4.4909 -2.1359 35 1 11.9494 -1.1676 2.8651 36 1 3.8661 -2.9232 0.8799 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:01 Heat of formation + Delta-G solvation = -105.071287 kcal Electronic energy + Delta-G solvation = -24928.039035 eV Core-core repulsion = 20956.782461 eV Total energy + Delta-G solvation = -3971.256575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.71905 -41.17852 -41.01277 -39.11970 -37.32200 -36.28728 -36.08948 -35.57555 -33.00893 -32.03014 -31.61297 -28.42804 -27.03997 -25.83421 -24.51254 -23.52206 -22.50845 -22.02655 -21.74350 -19.90148 -19.50985 -18.75250 -18.22581 -18.18296 -17.43193 -17.19317 -16.75179 -16.60330 -16.55343 -16.45436 -15.72762 -15.47019 -15.28322 -14.67109 -14.56416 -14.46663 -14.31732 -14.04650 -13.77848 -13.36648 -12.85830 -12.84524 -12.69832 -12.55600 -12.33602 -12.13031 -11.92620 -11.78907 -11.59269 -11.29464 -10.99719 -10.38132 -10.36341 -9.65261 -9.59485 -8.92656 -6.56428 -0.47435 0.13578 0.72285 0.79963 1.18616 1.24816 1.41069 1.47825 1.76702 1.84022 1.89715 2.11511 2.19141 2.62917 3.04854 3.15476 3.43251 3.72566 3.87344 3.99283 4.21222 4.25254 4.36957 4.43971 4.56739 4.58260 4.86043 4.89497 5.02282 5.08884 5.15126 5.37724 5.40074 5.61191 5.68776 5.83081 6.06248 6.24916 6.27622 6.38806 6.63898 6.73013 6.83571 7.07706 8.16340 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.021515 B = 0.003003 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.095310 B = 9320.797335 C = 9578.225655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.046 3.954 3 Si 0.966 3.034 4 H -0.245 1.245 5 H -0.277 1.277 6 H -0.253 1.253 7 C -0.487 4.487 8 H 0.052 0.948 9 C 0.067 3.933 10 C -0.224 4.224 11 C -0.081 4.081 12 C -0.184 4.184 13 C -0.112 4.112 14 C 0.571 3.429 15 O -0.575 6.575 16 N -0.708 5.708 17 C 0.200 3.800 18 C 0.035 3.965 19 O -0.183 6.183 20 C 0.222 3.778 21 N -0.483 5.483 22 C -0.047 4.047 23 C 0.568 3.432 24 O -0.522 6.522 25 O -0.493 6.493 26 C -0.164 4.164 27 H 0.296 0.704 28 H 0.108 0.892 29 H 0.147 0.853 30 H 0.143 0.857 31 H 0.413 0.587 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.316 0.684 35 H 0.437 0.563 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.597 -2.767 -4.934 27.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.168 4.168 3 Si 0.788 3.212 4 H -0.170 1.170 5 H -0.204 1.204 6 H -0.177 1.177 7 C -0.517 4.517 8 H 0.070 0.930 9 C 0.064 3.936 10 C -0.243 4.243 11 C -0.099 4.099 12 C -0.204 4.204 13 C -0.115 4.115 14 C 0.361 3.639 15 O -0.455 6.455 16 N -0.362 5.362 17 C 0.077 3.923 18 C -0.023 4.023 19 O -0.069 6.069 20 C -0.006 4.006 21 N -0.211 5.211 22 C -0.166 4.166 23 C 0.411 3.589 24 O -0.411 6.411 25 O -0.306 6.306 26 C -0.184 4.184 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.251 0.749 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.330 0.670 35 H 0.299 0.701 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 26.401 -3.196 -4.435 26.961 hybrid contribution -1.000 0.587 0.554 1.285 sum 25.401 -2.609 -3.881 25.828 Atomic orbital electron populations 1.69723 1.09305 1.31677 1.36681 1.26883 0.95402 1.04325 0.90220 0.85490 0.79538 0.76066 0.80115 1.16992 1.20383 1.17675 1.19470 0.94472 0.95809 1.41922 0.93001 1.17766 0.92502 0.92275 0.91032 1.21399 0.97382 1.03471 1.02071 1.21023 0.92313 0.97953 0.98627 1.20947 1.00019 0.98043 1.01371 1.19605 0.93339 0.97812 1.00759 1.18499 0.81898 0.83334 0.80151 1.90710 1.77435 1.41806 1.35573 1.45580 1.07973 1.35715 1.46955 1.19766 0.79719 0.94404 0.98456 1.23163 0.96587 0.95329 0.87230 1.84496 1.29769 1.56062 1.36597 1.29562 0.81098 0.90736 0.99192 1.70947 1.27002 1.18611 1.04491 1.20352 0.92733 1.04498 0.98978 1.19203 0.80564 0.76840 0.82293 1.91032 1.32007 1.63719 1.54376 1.84587 1.40120 1.56852 1.49046 1.21208 0.92639 1.02341 1.02213 0.89395 0.87474 0.83505 0.83920 0.74902 0.87898 0.87615 0.66989 0.70073 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.82 13.93 21.82 0.30 -46.52 16 2 C 0.05 2.50 5.40 85.25 0.46 2.96 16 3 Si 0.97 41.77 24.52 68.60 1.68 43.45 16 4 H -0.25 -9.59 6.71 99.48 0.67 -8.92 16 5 H -0.28 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.25 -11.20 6.86 99.48 0.68 -10.52 16 7 C -0.49 -28.01 9.57 23.47 0.22 -27.79 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 9 C 0.07 3.45 5.10 -21.32 -0.11 3.34 16 10 C -0.22 -10.01 7.17 22.77 0.16 -9.84 16 11 C -0.08 -2.94 10.01 22.18 0.22 -2.71 16 12 C -0.18 -6.33 9.55 22.70 0.22 -6.12 16 13 C -0.11 -4.65 5.87 -20.13 -0.12 -4.76 16 14 C 0.57 21.79 7.77 86.80 0.67 22.46 16 15 O -0.57 -25.96 16.33 -3.88 -0.06 -26.02 16 16 N -0.71 -19.56 5.50 -469.66 -2.58 -22.14 16 17 C 0.20 4.74 5.66 85.63 0.49 5.22 16 18 C 0.03 0.66 6.81 25.21 0.17 0.83 16 19 O -0.18 -2.49 10.72 0.59 0.01 -2.49 16 20 C 0.22 1.91 13.19 130.53 1.72 3.63 16 21 N -0.48 -8.12 11.36 -305.21 -3.47 -11.59 16 22 C -0.05 -0.96 7.04 40.38 0.28 -0.68 16 23 C 0.57 12.55 8.33 70.20 0.58 13.14 16 24 O -0.52 -14.52 15.59 19.72 0.31 -14.21 16 25 O -0.49 -8.13 13.44 -56.84 -0.76 -8.89 16 26 C -0.16 -8.14 9.34 23.01 0.21 -7.93 16 27 H 0.30 14.53 8.30 -92.71 -0.77 13.76 16 28 H 0.11 4.69 4.72 -2.91 -0.01 4.68 16 29 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 30 H 0.14 3.54 6.38 -2.91 -0.02 3.52 16 31 H 0.41 9.36 6.48 -92.71 -0.60 8.76 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.11 2.90 6.48 -2.39 -0.02 2.88 16 34 H 0.32 -1.39 8.06 -2.91 -0.02 -1.42 16 35 H 0.44 3.00 9.11 -74.06 -0.67 2.32 16 36 H 0.09 4.93 7.64 -2.91 -0.02 4.90 16 Total: -1.00 -78.33 324.31 0.47 -77.86 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -0.15 Total: 18.81 kcal Atomic # 6 Polarization: -13.46 SS G_CDS: 5.20 Total: -8.26 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -5.75 Total: -80.25 kcal Atomic # 8 Polarization: -51.10 SS G_CDS: -0.51 Total: -51.61 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 1.68 Total: 43.45 kcal Total: -78.33 0.47 -77.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.209 kcal (2) G-P(sol) polarization free energy of solvation -78.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds