Wall clock time and date at job start Tue Mar 31 2020 11:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.50696 * 109.45518 * 240.80993 * 3 2 1 5 5 O 1.20833 * 119.99655 * 240.02346 * 4 3 2 6 6 O 1.34222 * 120.00432 * 60.30613 * 4 3 2 7 7 C 1.53041 * 109.44790 * 0.77597 * 3 2 1 8 8 C 1.53188 * 109.31610 * 58.64770 * 7 3 2 9 9 N 1.46932 * 108.77453 * 54.63095 * 8 7 3 10 10 S 1.65597 * 120.62928 * 126.41100 * 9 8 7 11 11 O 1.42103 * 104.27865 * 26.05489 * 10 9 8 12 12 O 1.42097 * 104.27802 * 153.91171 * 10 9 8 13 13 C 1.81404 * 104.45236 * 269.98254 * 10 9 8 14 14 C 1.53001 * 109.47236 * 180.02562 * 13 10 9 15 15 C 1.50694 * 109.47150 * 179.97438 * 14 13 10 16 16 H 1.07995 * 119.99852 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00096 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00004 * 180.02562 * 17 15 14 19 19 Si 1.86795 * 119.99746 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47233 * 89.99883 * 19 17 15 21 21 H 1.48504 * 109.46862 * 209.99702 * 19 17 15 22 22 H 1.48499 * 109.47276 * 329.99793 * 19 17 15 23 23 C 1.46923 * 118.73878 * 306.39518 * 9 8 7 24 24 C 1.53037 * 109.45495 * 120.83578 * 3 2 1 25 25 H 0.96701 * 117.00458 * 179.72178 * 6 4 3 26 26 H 1.08996 * 109.49379 * 178.60246 * 7 3 2 27 27 H 1.09001 * 109.49446 * 298.69389 * 7 3 2 28 28 H 1.08995 * 109.58520 * 294.84982 * 8 7 3 29 29 H 1.08994 * 109.58958 * 174.41929 * 8 7 3 30 30 H 1.09006 * 109.46555 * 299.99649 * 13 10 9 31 31 H 1.08996 * 109.46909 * 59.99960 * 13 10 9 32 32 H 1.09003 * 109.46993 * 300.00036 * 14 13 10 33 33 H 1.08997 * 109.46896 * 59.99425 * 14 13 10 34 34 H 0.96994 * 120.00078 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.58928 * 293.81723 * 23 9 8 36 36 H 1.09006 * 109.58729 * 173.39355 * 23 9 8 37 37 H 1.08995 * 109.49861 * 61.31563 * 24 3 2 38 38 H 1.09013 * 109.48985 * 181.40175 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1097 0.6939 1.2405 5 8 3.8035 1.6784 1.1436 6 8 2.7906 0.2144 2.4528 7 6 3.1183 -1.4421 -0.0195 8 6 2.5780 -2.1538 -1.2639 9 7 2.9406 -1.3693 -2.4521 10 16 3.7432 -2.0756 -3.7168 11 8 3.3842 -3.4482 -3.6369 12 8 3.3831 -1.2886 -4.8437 13 6 5.4991 -1.8528 -3.3197 14 6 6.3549 -2.4706 -4.4273 15 6 7.8136 -2.2849 -4.0977 16 1 8.1015 -1.7774 -3.1890 17 6 8.7807 -2.7639 -4.9559 18 7 10.0537 -2.6023 -4.6680 19 14 8.2827 -3.6422 -6.5274 20 1 8.1499 -2.6528 -7.6268 21 1 9.3197 -4.6432 -6.8849 22 1 6.9825 -4.3290 -6.3199 23 6 2.5773 0.0536 -2.4972 24 6 3.1175 0.7405 -1.2390 25 1 3.1390 0.6906 3.2190 26 1 4.2080 -1.4422 -0.0446 27 1 2.7744 -1.9616 0.8748 28 1 1.4932 -2.2345 -1.1965 29 1 3.0169 -3.1489 -1.3351 30 1 5.7214 -0.7886 -3.2402 31 1 5.7222 -2.3424 -2.3718 32 1 6.1327 -3.5347 -4.5073 33 1 6.1316 -1.9806 -5.3750 34 1 10.7340 -2.9389 -5.2719 35 1 1.4923 0.1528 -2.5303 36 1 3.0157 0.5149 -3.3822 37 1 2.7732 1.7743 -1.2126 38 1 4.2073 0.7198 -1.2526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181589.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:08 Heat of formation + Delta-G solvation = -133.089858 kcal Electronic energy + Delta-G solvation = -24953.908794 eV Core-core repulsion = 21116.881195 eV Total energy + Delta-G solvation = -3837.027600 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.097 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40344 -39.07162 -36.91001 -36.72012 -36.42157 -35.67361 -34.00297 -33.36771 -31.66676 -31.52613 -26.80875 -26.01777 -24.00068 -22.67106 -22.37130 -21.14244 -19.20619 -18.71525 -18.04148 -17.82931 -17.10923 -16.36767 -16.19634 -15.71779 -15.49992 -15.16080 -14.73977 -14.68708 -14.37909 -14.27971 -13.77822 -13.69211 -13.04462 -12.97227 -12.90562 -12.84528 -12.68435 -12.10128 -12.04373 -11.95390 -11.82721 -11.81904 -11.67188 -11.31068 -11.29719 -11.25442 -11.18854 -10.89895 -10.48906 -10.20641 -9.82206 -9.49185 -9.08160 -8.69524 -6.19804 -4.21420 0.49757 1.46710 1.96484 2.22243 2.62805 2.74313 3.20729 3.24149 3.31888 3.35375 3.94656 3.99723 4.10222 4.28814 4.32844 4.48233 4.56979 4.62935 4.87546 5.03252 5.11656 5.12757 5.25311 5.27693 5.39909 5.46074 5.48269 5.58449 5.69488 5.81610 5.92416 6.22077 6.34884 6.76466 6.88865 6.96667 7.29972 7.50894 8.32658 8.81195 9.39828 10.92496 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.019377 B = 0.003919 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.682871 B = 7143.366631 C = 7969.906185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.214 3.786 3 C 0.059 3.941 4 C 0.496 3.504 5 O -0.487 6.487 6 O -0.508 6.508 7 C -0.128 4.128 8 C 0.120 3.880 9 N -1.007 6.007 10 S 2.585 3.415 11 O -0.960 6.960 12 O -0.960 6.960 13 C -0.581 4.581 14 C -0.007 4.007 15 C -0.520 4.520 16 H 0.078 0.922 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.868 3.132 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 C 0.119 3.881 24 C -0.120 4.120 25 H 0.418 0.582 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.267 0.733 35 H 0.071 0.929 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.538 5.331 12.916 20.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.105 4.105 3 C 0.054 3.946 4 C 0.334 3.666 5 O -0.373 6.373 6 O -0.320 6.320 7 C -0.168 4.168 8 C -0.006 4.006 9 N -0.843 5.843 10 S 2.684 3.316 11 O -0.950 6.950 12 O -0.950 6.950 13 C -0.715 4.715 14 C -0.047 4.047 15 C -0.559 4.559 16 H 0.096 0.904 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.694 3.306 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.186 1.186 23 C -0.007 4.007 24 C -0.160 4.160 25 H 0.278 0.722 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.145 0.855 31 H 0.145 0.855 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.129 0.871 37 H 0.116 0.884 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.519 4.949 11.743 20.863 hybrid contribution 1.063 0.195 0.269 1.113 sum -15.456 5.144 12.012 20.240 Atomic orbital electron populations 1.81265 1.11834 1.07057 1.06945 1.28086 0.93779 0.94386 0.94272 1.18094 0.83608 0.99978 0.92918 1.22556 0.77594 0.81947 0.84458 1.90803 1.34761 1.24576 1.87118 1.84507 1.71965 1.58900 1.16623 1.22202 1.03562 0.90120 1.00899 1.21427 1.01097 0.95278 0.82789 1.58066 1.73288 1.18332 1.34580 1.05927 0.78269 0.73987 0.73418 1.93553 1.82549 1.33225 1.85714 1.93552 1.82513 1.70765 1.48198 1.30351 1.19499 1.10951 1.10660 1.19416 0.97271 0.96155 0.91827 1.20829 0.87128 1.38838 1.09083 0.90355 1.24979 0.94822 0.95285 0.97950 1.69873 0.99706 1.46070 1.37608 0.86943 0.79160 0.80387 0.84063 1.19659 1.20755 1.18632 1.21455 1.01022 0.79916 0.98264 1.22107 1.03942 0.99641 0.90278 0.72190 0.87765 0.88019 0.90907 0.87198 0.85462 0.85513 0.94962 0.95394 0.92346 0.91021 0.87144 0.88443 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.62 18.54 42.16 0.78 -3.84 16 2 C 0.21 2.02 11.33 -20.76 -0.24 1.79 16 3 C 0.06 0.46 0.66 -158.41 -0.10 0.35 16 4 C 0.50 3.85 6.89 36.00 0.25 4.10 16 5 O -0.49 -5.01 16.74 -18.76 -0.31 -5.33 16 6 O -0.51 -2.78 13.20 -39.24 -0.52 -3.30 16 7 C -0.13 -0.86 4.82 -26.61 -0.13 -0.98 16 8 C 0.12 1.07 5.96 -3.71 -0.02 1.05 16 9 N -1.01 -11.08 3.22 -113.53 -0.37 -11.45 16 10 S 2.59 39.65 5.41 -107.50 -0.58 39.07 16 11 O -0.96 -17.17 16.72 -57.54 -0.96 -18.13 16 12 O -0.96 -17.26 16.72 -57.54 -0.96 -18.22 16 13 C -0.58 -9.48 6.12 37.16 0.23 -9.25 16 14 C -0.01 -0.16 4.05 -27.89 -0.11 -0.28 16 15 C -0.52 -13.89 9.66 -34.44 -0.33 -14.22 16 16 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 19 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 23 C 0.12 1.11 5.96 -3.72 -0.02 1.09 16 24 C -0.12 -0.93 4.17 -26.62 -0.11 -1.04 16 25 H 0.42 0.54 9.10 45.56 0.41 0.96 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.10 0.51 8.08 -51.93 -0.42 0.09 16 28 H 0.07 0.64 7.38 -51.93 -0.38 0.26 16 29 H 0.11 0.96 7.10 -51.93 -0.37 0.59 16 30 H 0.13 1.83 8.14 -51.92 -0.42 1.41 16 31 H 0.13 1.80 8.14 -51.93 -0.42 1.38 16 32 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 33 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.07 0.66 7.38 -51.93 -0.38 0.27 16 36 H 0.11 1.02 7.10 -51.93 -0.37 0.65 16 37 H 0.10 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.11 0.78 8.13 -51.92 -0.42 0.36 16 LS Contribution 335.66 15.07 5.06 5.06 Total: -1.00 -36.77 335.66 -6.42 -43.19 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -3.97 Total: -2.21 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: -0.69 Total: -15.47 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 1.19 Total: -40.88 kcal Atomic # 8 Polarization: -42.22 SS G_CDS: -2.76 Total: -44.98 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Atomic # 16 Polarization: 39.65 SS G_CDS: -0.58 Total: 39.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.77 -6.42 -43.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181589.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.897 kcal (2) G-P(sol) polarization free energy of solvation -36.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds