Wall clock time and date at job start Tue Mar 31 2020 11:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31321 * 1 3 3 Si 1.86797 * 120.00337 * 2 1 4 4 H 1.48507 * 109.47173 * 269.99610 * 3 2 1 5 5 H 1.48499 * 109.47093 * 29.99177 * 3 2 1 6 6 H 1.48494 * 109.47525 * 149.99670 * 3 2 1 7 7 C 1.39112 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99868 * 187.30716 * 7 2 1 9 9 N 1.36794 * 120.00161 * 7.30709 * 7 2 1 10 10 C 1.46502 * 119.99816 * 27.53883 * 9 7 2 11 11 C 1.50698 * 109.47108 * 263.05209 * 10 9 7 12 12 O 1.20829 * 119.99968 * 0.02562 * 11 10 9 13 13 O 1.34234 * 120.00254 * 180.02562 * 11 10 9 14 14 C 1.34779 * 119.99960 * 207.54385 * 9 7 2 15 15 O 1.21563 * 119.99435 * 185.10900 * 14 9 7 16 16 C 1.47993 * 119.99954 * 5.10527 * 14 9 7 17 17 C 1.40117 * 120.86753 * 207.51268 * 16 14 9 18 18 C 1.38107 * 119.25697 * 180.02562 * 17 16 14 19 19 N 1.31747 * 121.06944 * 359.97438 * 18 17 16 20 20 C 1.32835 * 121.92145 * 359.97438 * 19 18 17 21 21 C 1.47661 * 119.69290 * 179.97438 * 20 19 18 22 22 C 1.36030 * 125.93666 * 0.02562 * 21 20 19 23 23 C 1.40831 * 106.73484 * 179.97438 * 22 21 20 24 24 C 1.34808 * 107.04374 * 359.97438 * 23 22 21 25 25 O 1.34225 * 108.68519 * 0.26006 * 24 23 22 26 26 C 1.39573 * 120.87275 * 27.80479 * 16 14 9 27 27 H 0.96999 * 120.00198 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.47260 * 23.05083 * 10 9 7 29 29 H 1.08992 * 109.47111 * 143.05463 * 10 9 7 30 30 H 0.96695 * 117.00166 * 179.97438 * 13 11 10 31 31 H 1.08002 * 120.37475 * 0.04604 * 17 16 14 32 32 H 1.08002 * 119.46413 * 180.02562 * 18 17 16 33 33 H 1.07995 * 126.63278 * 0.02562 * 22 21 20 34 34 H 1.07999 * 126.48160 * 180.02562 * 23 22 21 35 35 H 1.08005 * 125.65368 * 180.02562 * 24 23 22 36 36 H 1.07996 * 120.56342 * 359.97438 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4949 2.0463 -1.4001 5 1 1.4447 2.6527 0.6999 6 1 3.5448 1.4401 0.7001 7 6 2.0087 -1.2048 0.0005 8 1 3.0822 -1.2085 0.1195 9 7 1.3331 -2.3847 -0.1496 10 6 0.0656 -2.4147 -0.8837 11 6 -1.0814 -2.3457 0.0914 12 8 -0.8625 -2.2780 1.2778 13 8 -2.3462 -2.3596 -0.3580 14 6 1.8334 -3.5196 0.3779 15 8 1.2828 -4.5825 0.1662 16 6 3.0531 -3.4717 1.2146 17 6 3.9089 -4.5778 1.3020 18 6 5.0379 -4.4968 2.0933 19 7 5.3208 -3.3987 2.7640 20 6 4.5417 -2.3241 2.7128 21 6 4.9057 -1.1193 3.4852 22 6 6.0011 -0.9812 4.2798 23 6 5.9513 0.3199 4.8164 24 6 4.8401 0.9065 4.3281 25 8 4.2084 0.0326 3.5288 26 6 3.3780 -2.3257 1.9422 27 1 -0.4850 0.8400 -0.0004 28 1 0.0180 -1.5624 -1.5614 29 1 -0.0003 -3.3391 -1.4572 30 1 -3.0483 -2.3139 0.3053 31 1 3.6882 -5.4834 0.7564 32 1 5.7000 -5.3473 2.1627 33 1 6.7623 -1.7251 4.4629 34 1 6.6682 0.7642 5.4910 35 1 4.5106 1.9115 4.5470 36 1 2.7425 -1.4533 1.9053 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608184163.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:50 Heat of formation + Delta-G solvation = -48.750816 kcal Electronic energy + Delta-G solvation = -26494.802066 eV Core-core repulsion = 22525.987730 eV Total energy + Delta-G solvation = -3968.814336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30185 -40.03460 -39.10654 -37.91883 -35.35406 -34.66662 -32.99191 -32.13872 -31.93789 -31.66231 -28.45245 -27.85854 -25.40857 -23.77915 -23.24553 -21.54357 -21.14163 -20.39620 -19.48324 -18.31497 -17.12752 -16.93661 -16.42352 -15.88137 -15.79532 -15.52529 -15.27375 -15.01395 -14.49266 -14.39954 -14.31793 -13.77370 -13.46951 -13.07159 -12.81656 -12.71386 -12.58912 -12.25874 -11.93718 -11.73063 -11.62745 -11.24283 -11.14724 -10.81274 -10.55375 -10.31662 -9.83722 -9.71241 -9.49402 -9.44370 -9.21016 -9.14034 -8.71532 -8.10265 -7.74651 -6.70573 -4.28205 0.93314 1.47837 2.20440 2.84166 2.97141 3.01726 3.09024 3.13489 3.55829 3.63940 3.87604 4.13804 4.34255 4.48097 4.60283 4.84204 5.00291 5.17454 5.21271 5.47182 5.50992 5.65197 5.71991 6.02383 6.05199 6.14859 6.18439 6.29592 6.38907 6.47657 6.55506 6.67933 6.80521 7.03268 7.14678 7.30811 7.37281 7.57267 8.02130 8.20634 8.74103 9.05020 9.15344 9.50200 10.35632 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.012415 B = 0.006156 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.817461 B = 4547.327301 C = 6067.463533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.047 3.953 3 Si 0.924 3.076 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.260 1.260 7 C -0.344 4.344 8 H 0.108 0.892 9 N -0.412 5.412 10 C 0.157 3.843 11 C 0.501 3.499 12 O -0.509 6.509 13 O -0.535 6.535 14 C 0.505 3.495 15 O -0.592 6.592 16 C -0.047 4.047 17 C -0.129 4.129 18 C 0.089 3.911 19 N -0.469 5.469 20 C 0.168 3.832 21 C 0.038 3.962 22 C -0.170 4.170 23 C -0.222 4.222 24 C -0.033 4.033 25 O -0.160 6.160 26 C -0.101 4.101 27 H 0.278 0.722 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.392 0.608 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.203 0.797 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.245 1.150 2.784 6.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.160 4.160 3 Si 0.749 3.251 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.471 4.471 8 H 0.125 0.875 9 N -0.129 5.129 10 C 0.032 3.968 11 C 0.342 3.658 12 O -0.394 6.394 13 O -0.346 6.346 14 C 0.295 3.705 15 O -0.478 6.478 16 C -0.058 4.058 17 C -0.150 4.150 18 C -0.069 4.069 19 N -0.180 5.180 20 C 0.033 3.967 21 C -0.013 4.013 22 C -0.190 4.190 23 C -0.241 4.241 24 C -0.102 4.102 25 O -0.054 6.054 26 C -0.122 4.122 27 H 0.089 0.911 28 H 0.142 0.858 29 H 0.102 0.898 30 H 0.248 0.752 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.172 0.828 34 H 0.166 0.834 35 H 0.219 0.781 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.627 0.883 3.036 7.343 hybrid contribution -0.781 1.145 0.175 1.397 sum 5.846 2.028 3.211 6.971 Atomic orbital electron populations 1.69574 1.06282 1.28619 1.45519 1.25369 0.95441 1.00117 0.95114 0.85925 0.79904 0.80452 0.78819 1.19910 1.20431 1.18372 1.19813 0.92798 0.82487 1.51972 0.87477 1.43103 1.17736 1.07259 1.44846 1.20396 0.80764 1.03490 0.92187 1.23463 0.82446 0.70295 0.89610 1.90568 1.84624 1.45439 1.18764 1.84504 1.17624 1.87086 1.45366 1.17944 0.85820 0.84465 0.82317 1.90640 1.63533 1.29948 1.63706 1.20320 0.95162 0.93485 0.96848 1.22314 0.94294 0.99128 0.99310 1.22418 0.95738 0.95060 0.93733 1.67169 1.31262 0.99137 1.20418 1.18210 0.92911 0.89772 0.95847 1.19808 0.93455 0.85836 1.02158 1.21780 0.99427 0.97761 1.00014 1.21758 1.00559 0.95737 1.06026 1.24154 0.94620 0.95674 0.95716 1.84132 1.45841 1.20878 1.54534 1.23355 0.95877 1.00405 0.92515 0.91135 0.85802 0.89798 0.75229 0.84108 0.82259 0.82835 0.83378 0.78054 0.80509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.12 8.77 55.50 0.49 -20.64 16 2 C 0.05 1.10 5.14 -17.45 -0.09 1.01 16 3 Si 0.92 18.66 29.56 -169.99 -5.02 13.64 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 7 C -0.34 -8.21 6.63 -15.01 -0.10 -8.31 16 8 H 0.11 2.50 5.72 -52.49 -0.30 2.20 16 9 N -0.41 -10.02 2.17 -117.12 -0.25 -10.28 16 10 C 0.16 3.59 5.16 -5.19 -0.03 3.56 16 11 C 0.50 11.78 6.36 36.00 0.23 12.01 16 12 O -0.51 -13.69 16.47 -18.75 -0.31 -14.00 16 13 O -0.53 -10.32 13.42 -39.27 -0.53 -10.84 16 14 C 0.50 12.30 7.20 -12.26 -0.09 12.21 16 15 O -0.59 -15.35 16.41 5.31 0.09 -15.26 16 16 C -0.05 -1.02 5.52 -104.70 -0.58 -1.60 16 17 C -0.13 -2.32 9.69 -38.92 -0.38 -2.70 16 18 C 0.09 1.40 11.16 -17.64 -0.20 1.20 16 19 N -0.47 -8.33 10.02 -9.92 -0.10 -8.43 16 20 C 0.17 3.25 6.74 -83.09 -0.56 2.69 16 21 C 0.04 0.70 7.03 -36.53 -0.26 0.44 16 22 C -0.17 -2.63 10.58 -39.39 -0.42 -3.05 16 23 C -0.22 -2.92 10.89 -39.82 -0.43 -3.36 16 24 C -0.03 -0.45 12.08 29.52 0.36 -0.10 16 25 O -0.16 -2.90 10.39 4.76 0.05 -2.85 16 26 C -0.10 -2.16 7.40 -38.59 -0.29 -2.45 16 27 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.12 2.78 6.68 -51.93 -0.35 2.43 16 29 H 0.08 1.79 7.57 -51.93 -0.39 1.40 16 30 H 0.39 5.86 9.10 45.56 0.41 6.27 16 31 H 0.14 2.30 7.96 -52.49 -0.42 1.89 16 32 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 33 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 34 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.20 1.95 8.06 -52.48 -0.42 1.53 16 36 H 0.18 4.13 5.36 -52.49 -0.28 3.85 16 LS Contribution 323.04 15.07 4.87 4.87 Total: -1.00 -31.69 323.04 -5.70 -37.39 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -2.15 Total: 14.82 kcal Atomic # 6 Polarization: 14.41 SS G_CDS: -2.82 Total: 11.58 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.13 Total: -39.34 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -0.70 Total: -42.96 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.69 -5.70 -37.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608184163.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.363 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds