Wall clock time and date at job start Tue Mar 31 2020 11:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86801 * 119.99690 * 2 1 4 4 H 1.48505 * 109.47093 * 239.99860 * 3 2 1 5 5 H 1.48499 * 109.47222 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47394 * 119.99576 * 3 2 1 7 7 C 1.38629 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99943 * 180.02562 * 7 2 1 9 9 O 1.34807 * 120.00000 * 359.97438 * 7 2 1 10 10 C 1.35771 * 117.00221 * 174.96744 * 9 7 2 11 11 C 1.38922 * 119.99866 * 185.07234 * 10 9 7 12 12 C 1.37995 * 120.00432 * 179.76589 * 11 10 9 13 13 C 1.38953 * 119.99576 * 0.50497 * 12 11 10 14 14 N 1.39861 * 120.00375 * 179.72544 * 13 12 11 15 15 C 1.34777 * 119.99853 * 215.16096 * 14 13 12 16 16 O 1.21626 * 120.00079 * 355.49564 * 15 14 13 17 17 C 1.47287 * 120.00011 * 175.49513 * 15 14 13 18 18 C 1.37968 * 125.89099 * 179.69088 * 17 15 14 19 19 C 1.39406 * 107.47915 * 179.84295 * 18 17 15 20 20 C 1.38019 * 107.45159 * 0.41879 * 19 18 17 21 21 C 1.47116 * 125.90947 * 179.76162 * 20 19 18 22 22 O 1.21542 * 120.00506 * 359.97438 * 21 20 19 23 23 O 1.34821 * 119.99918 * 179.97438 * 21 20 19 24 24 N 1.36720 * 125.88710 * 0.02562 * 17 15 14 25 25 H 0.96999 * 125.66480 * 359.97438 * 24 17 15 26 26 C 1.38954 * 119.98973 * 359.74766 * 13 12 11 27 27 C 1.37991 * 119.99953 * 359.97438 * 26 13 12 28 28 H 0.96998 * 120.00498 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99497 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.99999 * 180.23285 * 12 11 10 31 31 H 0.96998 * 120.00249 * 35.15736 * 14 13 12 32 32 H 1.08002 * 126.26295 * 0.02562 * 18 17 15 33 33 H 1.07999 * 126.27524 * 180.16352 * 19 18 17 34 34 H 0.96706 * 117.00280 * 179.97438 * 23 21 20 35 35 H 1.08001 * 120.00011 * 179.97438 * 26 13 12 36 36 H 1.07992 * 120.00047 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.1034 1.6965 -1.2125 5 1 1.2846 2.7465 -0.0006 6 1 3.1033 1.6966 1.2125 7 6 2.0089 -1.2005 0.0005 8 1 3.0889 -1.2004 0.0010 9 8 1.3350 -2.3680 0.0016 10 6 2.0704 -3.5044 -0.1041 11 6 1.4353 -4.7349 -0.2155 12 6 2.1826 -5.8895 -0.3277 13 6 3.5705 -5.8223 -0.3187 14 7 4.3281 -6.9930 -0.4267 15 6 5.4939 -7.1052 0.2402 16 8 5.9277 -6.1593 0.8699 17 6 6.2426 -8.3731 0.2066 18 6 7.4451 -8.6193 0.8366 19 6 7.8039 -9.9364 0.5539 20 6 6.8188 -10.4699 -0.2523 21 6 6.7943 -11.8371 -0.7949 22 8 7.6992 -12.6079 -0.5414 23 8 5.7680 -12.2351 -1.5733 24 7 5.8690 -9.5070 -0.4597 25 1 5.0639 -9.6117 -0.9906 26 6 4.2056 -4.5919 -0.2020 27 6 3.4580 -3.4370 -0.0955 28 1 -0.4851 0.8400 -0.0004 29 1 0.3566 -4.7874 -0.2185 30 1 1.6888 -6.8457 -0.4182 31 1 4.0145 -7.7243 -0.9815 32 1 8.0045 -7.9206 1.4409 33 1 8.6922 -10.4448 0.8987 34 1 5.7960 -13.1424 -1.9068 35 1 5.2843 -4.5396 -0.1945 36 1 3.9515 -2.4808 -0.0044 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623117.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:03 Heat of formation + Delta-G solvation = -72.908076 kcal Electronic energy + Delta-G solvation = -24166.912552 eV Core-core repulsion = 20197.050679 eV Total energy + Delta-G solvation = -3969.861873 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.094 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.99119 -40.36467 -39.72186 -38.61043 -36.63200 -36.58836 -34.24327 -32.27655 -31.63825 -30.54309 -30.25822 -28.04477 -25.55326 -24.92538 -22.97922 -22.21515 -21.41349 -20.62042 -20.26704 -19.47917 -18.47119 -18.02473 -17.50611 -16.99920 -16.46456 -16.33207 -15.40557 -14.89638 -14.56721 -14.56496 -14.40908 -13.97977 -13.83283 -13.69551 -13.63059 -13.21686 -13.16791 -12.95310 -12.59909 -12.13862 -11.83371 -11.68171 -11.62483 -11.36735 -11.05563 -10.84949 -10.49091 -10.10728 -9.83596 -9.58935 -9.28253 -8.89854 -8.75237 -8.29765 -7.04762 -6.49583 -4.07248 0.42697 1.61080 2.08887 2.16560 2.23370 2.59936 2.61806 2.96210 3.10678 3.12645 3.15985 3.18521 3.94018 4.40635 4.49555 4.57603 4.76377 4.93358 5.04645 5.17937 5.39100 5.57007 5.64819 5.69599 5.87478 5.96072 5.99512 6.09571 6.23874 6.30222 6.60649 6.64259 6.77917 6.89796 6.98480 7.22388 7.31595 7.35925 7.48001 7.66184 7.95047 8.07408 8.95855 9.63664 10.67889 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.034733 B = 0.002236 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.957266 B =12517.765517 C =13164.078509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.149 3.851 11 C -0.178 4.178 12 C -0.089 4.089 13 C 0.025 3.975 14 N -0.654 5.654 15 C 0.574 3.426 16 O -0.501 6.501 17 C 0.012 3.988 18 C -0.127 4.127 19 C -0.105 4.105 20 C -0.015 4.015 21 C 0.554 3.446 22 O -0.500 6.500 23 O -0.519 6.519 24 N -0.511 5.511 25 H 0.425 0.575 26 C -0.060 4.060 27 C -0.221 4.221 28 H 0.271 0.729 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.396 0.604 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.420 0.580 35 H 0.126 0.874 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.510 -20.795 -3.251 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.094 3.906 11 C -0.198 4.198 12 C -0.109 4.109 13 C -0.067 4.067 14 N -0.298 5.298 15 C 0.360 3.640 16 O -0.375 6.375 17 C -0.107 4.107 18 C -0.152 4.152 19 C -0.131 4.131 20 C -0.129 4.129 21 C 0.398 3.602 22 O -0.388 6.388 23 O -0.332 6.332 24 N -0.109 5.109 25 H 0.264 0.736 26 C -0.080 4.080 27 C -0.241 4.241 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.133 0.867 31 H 0.230 0.770 32 H 0.181 0.819 33 H 0.178 0.822 34 H 0.280 0.720 35 H 0.144 0.856 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.472 -19.730 -2.639 22.492 hybrid contribution -0.104 -0.347 -0.789 0.868 sum 10.367 -20.076 -3.427 22.854 Atomic orbital electron populations 1.70030 1.05979 1.27921 1.45609 1.25302 0.95865 0.98905 0.96402 0.85767 0.78711 0.79602 0.79312 1.19432 1.20259 1.19385 1.21308 0.91886 0.80746 1.52852 0.88948 1.83968 1.34354 1.11461 1.77819 1.19435 0.90296 0.88132 0.92694 1.19989 0.99542 0.89776 1.10507 1.20337 0.91283 0.97515 1.01739 1.17169 0.89835 0.84841 1.14858 1.43017 1.21525 1.17854 1.47399 1.17174 0.81005 0.85846 0.79930 1.90870 1.67224 1.37350 1.42067 1.20889 0.99109 0.87429 1.03292 1.21349 0.94807 0.96455 1.02602 1.21350 0.98833 0.94419 0.98496 1.19352 0.95532 0.88106 1.09943 1.19594 0.79186 0.86053 0.75356 1.90965 1.36965 1.53513 1.57319 1.84549 1.47110 1.38685 1.62905 1.41992 1.20141 1.09793 1.38966 0.73593 1.20854 0.99859 0.90228 0.97034 1.21109 0.93539 0.98810 1.10620 0.91882 0.85936 0.86743 0.77029 0.81933 0.82170 0.71976 0.85572 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.83 13.67 55.48 0.76 -24.08 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.39 -10.78 9.48 30.88 0.29 -10.49 16 8 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 9 O -0.17 -4.83 9.75 0.05 0.00 -4.83 16 10 C 0.15 3.50 6.65 -39.07 -0.26 3.24 16 11 C -0.18 -3.56 9.98 -39.42 -0.39 -3.95 16 12 C -0.09 -1.45 9.96 -39.41 -0.39 -1.85 16 13 C 0.02 0.42 6.30 -83.66 -0.53 -0.11 16 14 N -0.65 -8.16 5.33 -10.84 -0.06 -8.22 16 15 C 0.57 7.74 7.65 -12.58 -0.10 7.64 16 16 O -0.50 -8.70 14.31 5.25 0.08 -8.62 16 17 C 0.01 0.13 7.03 -82.11 -0.58 -0.45 16 18 C -0.13 -1.25 10.60 -39.25 -0.42 -1.67 16 19 C -0.10 -0.93 10.60 -39.23 -0.42 -1.34 16 20 C -0.01 -0.13 7.07 -82.11 -0.58 -0.71 16 21 C 0.55 4.53 8.33 34.33 0.29 4.82 16 22 O -0.50 -5.44 17.66 -19.30 -0.34 -5.78 16 23 O -0.52 -2.60 13.44 -40.82 -0.55 -3.15 16 24 N -0.51 -3.97 6.01 -5.91 -0.04 -4.00 16 25 H 0.43 2.18 8.16 -40.82 -0.33 1.85 16 26 C -0.06 -1.15 8.69 -39.41 -0.34 -1.50 16 27 C -0.22 -4.81 9.16 -39.42 -0.36 -5.18 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 30 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.40 3.33 7.93 -40.82 -0.32 3.00 16 32 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.42 0.30 9.11 45.56 0.42 0.72 16 35 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 36 H 0.13 2.89 5.63 -52.49 -0.30 2.59 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -34.94 330.83 -6.03 -40.97 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -1.96 Total: 7.98 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.88 Total: -10.55 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.67 Total: -36.30 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.81 Total: -22.38 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.94 -6.03 -40.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623117.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.936 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds