Wall clock time and date at job start Tue Mar 31 2020 10:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21638 * 120.00158 * 0.02562 * 8 7 6 10 10 C 1.47157 * 119.99888 * 180.02562 * 8 7 6 11 11 C 1.36043 * 123.46821 * 0.02562 * 10 8 7 12 12 S 1.70443 * 110.83321 * 179.97438 * 11 10 8 13 13 C 1.75507 * 92.45599 * 0.02562 * 12 11 10 14 14 C 1.32839 * 110.58122 * 359.71084 * 13 12 11 15 15 Cl 1.73596 * 123.47136 * 180.24648 * 14 13 12 16 16 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 26 26 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 28 28 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 29 29 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 31 31 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 33 33 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 35 35 H 1.08002 * 124.58550 * 0.02562 * 11 10 8 36 36 H 1.08001 * 124.70772 * 180.02562 * 13 12 11 37 37 H 0.97004 * 119.99747 * 95.00774 * 16 4 2 38 38 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0411 0.7952 5.0289 10 6 2.3923 -0.7644 6.1137 11 6 3.2538 -1.8163 6.0686 12 16 3.7333 -2.2749 7.6386 13 6 2.7535 -1.0245 8.3847 14 6 2.1177 -0.3149 7.4590 15 17 1.0610 1.0120 7.8280 16 7 3.5049 -0.7217 1.2489 17 6 4.1891 -1.6935 0.5688 18 1 3.6488 -2.4594 0.0322 19 6 5.5772 -1.6943 0.5689 20 7 6.2358 -0.7578 1.2183 21 14 6.5106 -3.0195 -0.3595 22 1 7.9708 -2.7942 -0.2092 23 1 6.1561 -4.3525 0.1909 24 1 6.1470 -2.9654 -1.7983 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.8183 1.0503 2.4549 33 1 0.4436 -0.0769 2.5444 34 1 2.7231 -1.3670 3.6010 35 1 3.5893 -2.2955 5.1607 36 1 2.6817 -0.8524 9.4485 37 1 3.9902 -0.0337 1.7306 38 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753832581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:52 Heat of formation + Delta-G solvation = -6.989612 kcal Electronic energy + Delta-G solvation = -22104.650387 eV Core-core repulsion = 18713.800070 eV Total energy + Delta-G solvation = -3390.850318 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.75376 -37.80987 -36.99898 -35.88458 -33.84174 -33.60078 -30.53179 -29.85810 -27.28706 -26.67763 -25.00485 -23.60004 -22.71696 -21.23128 -19.45408 -18.86628 -18.05199 -17.44722 -17.01487 -15.98518 -15.18461 -15.10804 -14.34845 -14.21076 -13.90057 -13.68138 -13.65009 -13.37338 -13.36264 -13.04063 -12.85454 -12.62665 -11.95964 -11.63458 -11.52291 -11.46364 -11.33144 -10.99481 -10.83537 -10.78857 -10.58395 -10.29897 -10.03478 -9.94254 -9.59329 -9.24335 -9.14232 -8.98454 -8.72651 -8.46170 -7.14237 -6.17953 -3.20017 0.57475 1.10459 1.53896 1.71490 2.52088 3.42011 3.45299 3.48331 3.49832 3.65971 4.50822 4.58680 5.04346 5.13390 5.24970 5.27867 5.29180 5.43322 5.57855 5.66664 5.68207 5.72151 5.78626 5.87017 6.02225 6.07970 6.25106 6.29489 6.36566 6.53662 6.63826 6.78484 6.92375 6.97146 7.72774 7.83149 8.47892 8.66564 9.11294 9.98068 10.13100 11.29244 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.004462 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.561292 B = 6273.988372 C = 8155.836483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.054 0.946 6 C 0.111 3.889 7 N -0.708 5.708 8 C 0.569 3.431 9 O -0.531 6.531 10 C -0.147 4.147 11 C -0.198 4.198 12 S 0.229 5.771 13 C -0.244 4.244 14 C -0.005 4.005 15 Cl -0.022 7.022 16 N -0.731 5.731 17 C -0.333 4.333 18 H 0.065 0.935 19 C -0.041 4.041 20 N -0.941 5.941 21 Si 1.077 2.923 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.296 1.296 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.406 0.594 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.368 0.632 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.344 -2.324 11.702 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.360 5.360 8 C 0.353 3.647 9 O -0.409 6.409 10 C -0.165 4.165 11 C -0.337 4.337 12 S 0.494 5.506 13 C -0.380 4.380 14 C -0.044 4.044 15 Cl 0.007 6.993 16 N -0.374 5.374 17 C -0.464 4.464 18 H 0.083 0.917 19 C -0.239 4.239 20 N -0.585 5.585 21 Si 0.908 3.092 22 H -0.211 1.211 23 H -0.223 1.223 24 H -0.223 1.223 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.200 0.800 36 H 0.195 0.805 37 H 0.202 0.798 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.594 -3.392 11.848 13.977 hybrid contribution -2.089 1.622 -0.297 2.661 sum -8.683 -1.770 11.551 14.558 Atomic orbital electron populations 1.21921 0.96587 1.01035 1.01110 1.21694 0.93707 0.97046 1.00742 1.21761 1.02253 0.95733 0.99980 1.20451 0.85784 0.96754 0.90520 0.92810 1.21852 0.97487 0.97886 0.84042 1.45853 1.48557 1.36478 1.05085 1.17424 0.81468 0.83266 0.82557 1.90810 1.35822 1.27760 1.86534 1.20040 1.03398 0.99512 0.93547 1.25790 1.01697 1.01189 1.05016 1.83120 1.42960 1.30364 0.94187 1.25409 1.05779 1.02880 1.03918 1.20636 0.97816 0.94119 0.91814 1.98387 1.63213 1.43773 1.93927 1.42460 0.99428 1.33380 1.62102 1.20006 0.91714 1.06275 1.28421 0.91746 1.25704 0.93347 1.03144 1.01680 1.70896 1.37358 1.15356 1.34937 0.83280 0.76368 0.74312 0.75259 1.21108 1.22319 1.22311 0.93429 0.93181 0.92875 0.90906 0.91775 0.94067 0.93493 0.91304 0.91362 0.75722 0.80042 0.80535 0.79802 0.93334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.84 37.15 0.33 -1.74 16 2 C -0.11 -1.87 2.91 -90.62 -0.26 -2.13 16 3 C -0.14 -2.37 8.69 37.16 0.32 -2.05 16 4 C 0.18 3.20 2.27 -67.93 -0.15 3.05 16 5 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 6 C 0.11 1.89 4.51 -4.04 -0.02 1.87 16 7 N -0.71 -11.86 5.36 -61.47 -0.33 -12.19 16 8 C 0.57 9.85 7.79 -12.64 -0.10 9.75 16 9 O -0.53 -10.44 15.05 5.24 0.08 -10.36 16 10 C -0.15 -2.19 5.98 -104.61 -0.63 -2.81 16 11 C -0.20 -2.48 10.38 29.94 0.31 -2.17 16 12 S 0.23 2.20 23.02 -107.50 -2.47 -0.27 16 13 C -0.24 -2.58 11.00 28.87 0.32 -2.26 16 14 C 0.00 -0.07 6.49 -38.98 -0.25 -0.32 16 15 Cl -0.02 -0.31 27.24 -51.86 -1.41 -1.72 16 16 N -0.73 -16.30 3.79 -53.43 -0.20 -16.50 16 17 C -0.33 -8.51 9.93 -15.06 -0.15 -8.66 16 18 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 19 C -0.04 -1.10 5.50 -17.43 -0.10 -1.19 16 20 N -0.94 -27.38 13.70 55.49 0.76 -26.62 16 21 Si 1.08 24.54 29.92 -169.99 -5.09 19.45 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 23 H -0.30 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.06 1.26 7.60 -51.93 -0.39 0.87 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 32 H 0.07 1.24 6.17 -51.93 -0.32 0.92 16 33 H 0.07 1.10 6.71 -51.93 -0.35 0.75 16 34 H 0.41 6.74 6.64 -40.82 -0.27 6.47 16 35 H 0.18 2.17 7.01 -52.49 -0.37 1.80 16 36 H 0.18 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.37 8.77 6.63 -40.82 -0.27 8.50 16 38 H 0.26 7.37 6.77 -40.82 -0.28 7.09 16 LS Contribution 340.64 15.07 5.13 5.13 Total: -1.00 -30.05 340.64 -8.57 -38.62 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -4.66 Total: 13.11 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -0.38 Total: -8.66 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: 0.23 Total: -55.30 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.09 Total: 19.45 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.47 Total: -0.27 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.41 Total: -1.72 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.05 -8.57 -38.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753832581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.627 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds