Wall clock time and date at job start Tue Mar 31 2020 10:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21638 * 120.00158 * 0.02562 * 8 7 6 10 10 C 1.47157 * 119.99888 * 180.02562 * 8 7 6 11 11 C 1.36043 * 123.46821 * 0.02562 * 10 8 7 12 12 S 1.70443 * 110.83321 * 179.97438 * 11 10 8 13 13 C 1.75507 * 92.45599 * 0.02562 * 12 11 10 14 14 C 1.32839 * 110.58122 * 359.71084 * 13 12 11 15 15 Cl 1.73596 * 123.47136 * 180.24648 * 14 13 12 16 16 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 17 17 C 1.36935 * 120.00239 * 275.00034 * 16 4 2 18 18 H 1.08004 * 120.00069 * 0.02562 * 17 16 4 19 19 C 1.38811 * 120.00368 * 180.02562 * 17 16 4 20 20 N 1.31624 * 119.99540 * 359.72375 * 19 17 16 21 21 Si 1.86800 * 120.00451 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72253 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72375 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72186 * 21 19 17 25 25 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 26 26 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 28 28 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 29 29 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 31 31 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 32 32 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 33 33 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 34 34 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 35 35 H 1.08002 * 124.58550 * 0.02562 * 11 10 8 36 36 H 1.08001 * 124.70772 * 180.02562 * 13 12 11 37 37 H 0.97004 * 119.99747 * 95.00774 * 16 4 2 38 38 H 0.97000 * 120.00481 * 0.27542 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0411 0.7952 5.0289 10 6 2.3923 -0.7644 6.1137 11 6 3.2538 -1.8163 6.0686 12 16 3.7333 -2.2749 7.6386 13 6 2.7535 -1.0245 8.3847 14 6 2.1177 -0.3149 7.4590 15 17 1.0610 1.0120 7.8280 16 7 3.5049 -0.7217 1.2489 17 6 4.1891 -1.6935 0.5688 18 1 3.6488 -2.4594 0.0322 19 6 5.5772 -1.6943 0.5689 20 7 6.2358 -0.7578 1.2183 21 14 6.5106 -3.0195 -0.3595 22 1 7.9708 -2.7942 -0.2092 23 1 6.1561 -4.3525 0.1909 24 1 6.1470 -2.9654 -1.7983 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.8183 1.0503 2.4549 33 1 0.4436 -0.0769 2.5444 34 1 2.7231 -1.3670 3.6010 35 1 3.5893 -2.2955 5.1607 36 1 2.6817 -0.8524 9.4485 37 1 3.9902 -0.0337 1.7306 38 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753832581.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:52 Heat of formation + Delta-G solvation = -25.427278 kcal Electronic energy + Delta-G solvation = -22105.449905 eV Core-core repulsion = 18713.800070 eV Total energy + Delta-G solvation = -3391.649835 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.04127 -39.15645 -38.20487 -36.92013 -35.48867 -35.16302 -32.11598 -31.08297 -28.74888 -27.98876 -26.22001 -25.33535 -24.22487 -22.39083 -20.76218 -20.05280 -19.36299 -19.19441 -18.14405 -17.40167 -16.60487 -16.41223 -15.84605 -15.74950 -15.40387 -15.16697 -15.00454 -14.57973 -14.41810 -14.25743 -13.93300 -13.84795 -13.48052 -12.92807 -12.77025 -12.71021 -12.60066 -12.51532 -12.44308 -12.12699 -11.90788 -11.78304 -11.71490 -11.45029 -11.12279 -10.96309 -10.80394 -10.17476 -9.99672 -9.38834 -9.07195 -8.30363 -5.25906 -0.39790 0.23630 0.60358 0.66541 1.57073 1.62033 1.69981 1.86172 2.14897 2.23610 2.73941 3.45985 3.56018 3.70469 3.80161 3.91968 4.14058 4.22044 4.24814 4.33859 4.36498 4.42338 4.62417 4.73030 4.80128 4.81598 4.86286 5.02129 5.08213 5.13558 5.22963 5.38809 5.49847 5.57909 5.69594 6.48817 6.55605 7.12235 7.15472 8.03092 8.15962 9.20067 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.011804 B = 0.004462 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.561292 B = 6273.988372 C = 8155.836483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.133 4.133 4 C 0.177 3.823 5 H 0.054 0.946 6 C 0.122 3.878 7 N -0.708 5.708 8 C 0.565 3.435 9 O -0.562 6.562 10 C -0.178 4.178 11 C -0.210 4.210 12 S 0.315 5.685 13 C -0.232 4.232 14 C -0.034 4.034 15 Cl -0.038 7.038 16 N -0.736 5.736 17 C -0.320 4.320 18 H 0.067 0.933 19 C -0.097 4.097 20 N -0.975 5.975 21 Si 1.121 2.879 22 H -0.299 1.299 23 H -0.275 1.275 24 H -0.285 1.285 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.029 0.971 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.407 0.593 35 H 0.182 0.818 36 H 0.207 0.793 37 H 0.359 0.641 38 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.874 -3.901 12.452 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.191 4.191 4 C 0.068 3.932 5 H 0.072 0.928 6 C -0.002 4.002 7 N -0.359 5.359 8 C 0.351 3.649 9 O -0.442 6.442 10 C -0.196 4.196 11 C -0.349 4.349 12 S 0.580 5.420 13 C -0.368 4.368 14 C -0.073 4.073 15 Cl -0.009 7.009 16 N -0.378 5.378 17 C -0.451 4.451 18 H 0.085 0.915 19 C -0.289 4.289 20 N -0.623 5.623 21 Si 0.948 3.052 22 H -0.226 1.226 23 H -0.201 1.201 24 H -0.212 1.212 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.243 0.757 35 H 0.200 0.800 36 H 0.224 0.776 37 H 0.191 0.809 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.176 -4.991 12.595 15.332 hybrid contribution -1.931 2.044 -0.477 2.852 sum -9.107 -2.947 12.119 15.443 Atomic orbital electron populations 1.21838 0.93642 1.02079 1.02244 1.21586 0.96111 0.96369 0.98691 1.21689 0.99933 0.96177 1.01276 1.20583 0.83523 0.97143 0.91918 0.92839 1.21705 0.98070 0.96907 0.83557 1.45836 1.48536 1.36413 1.05121 1.17850 0.80979 0.82861 0.83238 1.90777 1.37305 1.29128 1.87017 1.19927 1.05394 1.01161 0.93111 1.25977 1.01060 1.00551 1.07284 1.82888 1.40270 1.27925 0.90879 1.25866 1.03978 1.01841 1.05083 1.20715 0.99475 0.95079 0.91992 1.98371 1.63942 1.44750 1.93885 1.42527 1.01033 1.32504 1.61692 1.20270 0.91890 1.06087 1.26889 0.91548 1.26887 0.94853 1.04502 1.02642 1.71000 1.37581 1.16558 1.37176 0.82685 0.74442 0.73242 0.74867 1.22561 1.20141 1.21213 0.91833 0.92221 0.92211 0.92954 0.95203 0.92206 0.92755 0.92556 0.90038 0.75701 0.80044 0.77608 0.80881 0.94655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 8.84 71.98 0.64 -2.97 16 2 C -0.11 -3.52 2.91 -10.79 -0.03 -3.55 16 3 C -0.13 -4.49 8.69 71.99 0.63 -3.86 16 4 C 0.18 6.44 2.27 44.99 0.10 6.55 16 5 H 0.05 1.97 8.08 -2.38 -0.02 1.95 16 6 C 0.12 4.12 4.51 86.38 0.39 4.51 16 7 N -0.71 -24.03 5.36 -466.63 -2.50 -26.53 16 8 C 0.56 19.89 7.79 86.59 0.67 20.56 16 9 O -0.56 -22.55 15.05 -4.15 -0.06 -22.62 16 10 C -0.18 -5.24 5.98 -19.86 -0.12 -5.36 16 11 C -0.21 -5.00 10.38 67.31 0.70 -4.30 16 12 S 0.31 5.11 23.02 -56.49 -1.30 3.81 16 13 C -0.23 -4.30 11.00 66.64 0.73 -3.56 16 14 C -0.03 -0.91 6.49 22.68 0.15 -0.77 16 15 Cl -0.04 -1.09 27.24 -2.72 -0.07 -1.16 16 16 N -0.74 -33.32 3.79 -322.94 -1.23 -34.55 16 17 C -0.32 -16.37 9.93 84.03 0.83 -15.53 16 18 H 0.07 3.33 7.83 -2.91 -0.02 3.31 16 19 C -0.10 -5.26 5.50 84.86 0.47 -4.79 16 20 N -0.97 -57.93 13.70 21.65 0.30 -57.64 16 21 Si 1.12 49.35 29.92 68.60 2.05 51.40 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 23 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.29 -11.96 7.11 99.48 0.71 -11.25 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.47 6.54 -2.39 -0.02 1.46 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.03 1.19 7.60 -2.39 -0.02 1.17 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.73 6.32 -2.39 -0.02 1.71 16 32 H 0.06 2.06 6.17 -2.39 -0.01 2.05 16 33 H 0.08 2.56 6.71 -2.39 -0.02 2.54 16 34 H 0.41 13.69 6.64 -92.71 -0.62 13.07 16 35 H 0.18 4.23 7.01 -2.91 -0.02 4.21 16 36 H 0.21 2.49 8.06 -2.91 -0.02 2.46 16 37 H 0.36 17.68 6.63 -92.71 -0.61 17.07 16 38 H 0.24 14.52 6.77 -92.71 -0.63 13.89 16 Total: -1.00 -66.00 340.64 2.36 -63.63 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.02 Total: 36.73 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.16 Total: -13.08 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -3.43 Total: -118.71 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.06 Total: -22.62 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 2.05 Total: 51.40 kcal Atomic # 16 Polarization: 5.11 SS G_CDS: -1.30 Total: 3.81 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.07 Total: -1.16 kcal Total: -66.00 2.36 -63.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753832581.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.207 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds