Wall clock time and date at job start Tue Mar 31 2020 11:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86807 * 119.99793 * 2 1 4 4 H 1.48498 * 109.47052 * 90.00137 * 3 2 1 5 5 H 1.48500 * 109.46919 * 209.99768 * 3 2 1 6 6 H 1.48495 * 109.47110 * 329.99593 * 3 2 1 7 7 C 1.39952 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00333 * 21.35737 * 7 2 1 9 9 C 1.41077 * 119.99806 * 201.35691 * 7 2 1 10 10 C 1.40734 * 120.30202 * 26.47517 * 9 7 2 11 11 C 1.36461 * 119.94536 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.57369 * 0.02562 * 11 10 9 13 13 C 1.38220 * 120.62073 * 359.97438 * 12 11 10 14 14 C 1.38649 * 120.02955 * 359.73829 * 13 12 11 15 15 N 1.39126 * 120.28330 * 180.25397 * 14 13 12 16 16 C 1.34780 * 120.00085 * 19.25536 * 15 14 13 17 17 O 1.21283 * 119.99701 * 5.71253 * 16 15 14 18 18 C 1.50694 * 120.00250 * 185.72390 * 16 15 14 19 19 N 1.46505 * 109.47408 * 179.97438 * 18 16 15 20 20 C 1.34943 * 126.03739 * 125.00055 * 19 18 16 21 21 C 1.35314 * 107.74592 * 179.97438 * 20 19 18 22 22 N 1.48021 * 126.04073 * 179.97438 * 21 20 19 23 23 O 1.21799 * 120.00129 * 359.97438 * 22 21 20 24 24 O 1.21799 * 120.00035 * 179.97438 * 22 21 20 25 25 C 1.39870 * 107.92240 * 359.97438 * 21 20 19 26 26 N 1.30842 * 108.20032 * 359.74257 * 25 21 20 27 27 H 0.96998 * 120.00180 * 174.94159 * 1 2 3 28 28 H 1.08002 * 120.02401 * 359.95413 * 10 9 7 29 29 H 1.07996 * 119.71207 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.68792 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.98510 * 180.02562 * 13 12 11 32 32 H 0.96996 * 120.00296 * 199.24601 * 15 14 13 33 33 H 1.09000 * 109.47161 * 299.99892 * 18 16 15 34 34 H 1.09005 * 109.47223 * 59.99346 * 18 16 15 35 35 H 1.08002 * 126.12568 * 359.97438 * 20 19 18 36 36 H 1.08001 * 125.90412 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 1.4001 5 1 3.5400 1.4402 -0.7000 6 1 1.4399 2.6527 -0.7001 7 6 2.0083 -1.2120 -0.0005 8 1 1.5239 -2.1151 -0.3416 9 6 3.3464 -1.2541 0.4444 10 6 3.8167 -0.3053 1.3713 11 6 5.1123 -0.3531 1.7971 12 6 5.9758 -1.3319 1.3233 13 6 5.5388 -2.2754 0.4126 14 6 4.2260 -2.2541 -0.0326 15 7 3.7791 -3.2044 -0.9452 16 6 4.4620 -4.3548 -1.1091 17 8 5.4051 -4.6078 -0.3896 18 6 4.0540 -5.3264 -2.1863 19 7 4.9462 -6.4881 -2.1596 20 6 4.5667 -7.7782 -2.0479 21 6 5.6849 -8.5400 -2.0629 22 7 5.7346 -10.0160 -1.9638 23 8 4.7029 -10.6543 -1.8567 24 8 6.8074 -10.5923 -1.9894 25 6 6.7856 -7.6861 -2.1887 26 7 6.3437 -6.4563 -2.2526 27 1 -0.4850 -0.8367 -0.0741 28 1 3.1528 0.4602 1.7450 29 1 5.4693 0.3771 2.5082 30 1 6.9985 -1.3562 1.6697 31 1 6.2192 -3.0324 0.0512 32 1 2.9760 -3.0392 -1.4635 33 1 3.0282 -5.6516 -2.0127 34 1 4.1210 -4.8394 -3.1592 35 1 3.5521 -8.1383 -1.9619 36 1 7.8213 -7.9898 -2.2300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339166399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:08 Heat of formation + Delta-G solvation = 73.286914 kcal Electronic energy + Delta-G solvation = -24923.410908 eV Core-core repulsion = 20992.181276 eV Total energy + Delta-G solvation = -3931.229631 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.58668 -41.53327 -40.00764 -37.66613 -36.57104 -34.28845 -34.11171 -33.89468 -31.50460 -30.43022 -29.73661 -27.99859 -25.85157 -24.90496 -22.90253 -21.97065 -21.81740 -20.79825 -20.00514 -19.20226 -18.56273 -18.42477 -17.69222 -17.31514 -17.19812 -16.45482 -15.69902 -15.35691 -14.93175 -14.83182 -14.33908 -13.85838 -13.79337 -13.56156 -13.06695 -12.84659 -12.73938 -12.29725 -11.95821 -11.77265 -11.62120 -11.21325 -11.16948 -11.10153 -10.98786 -10.66951 -10.43280 -10.04094 -9.96804 -9.82271 -9.66195 -9.30861 -9.02947 -7.92807 -7.55614 -7.23461 -4.74388 0.10412 0.98363 1.22377 1.90789 2.08947 2.10078 2.54413 2.89127 3.06903 3.18040 3.22360 3.40538 3.81803 3.84062 3.98987 4.23550 4.35947 4.56413 4.58670 4.70756 4.78368 5.21504 5.52997 5.86938 5.97181 6.03593 6.21009 6.29090 6.42220 6.62340 6.77470 6.79545 7.10620 7.17027 7.31760 7.45644 7.61018 7.66223 7.71807 7.93294 8.12587 8.25070 8.42831 8.54150 9.77582 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.024892 B = 0.002883 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.590246 B = 9708.828148 C =10443.919179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.047 3.953 3 Si 1.073 2.927 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.289 1.289 7 C -0.524 4.524 8 H 0.075 0.925 9 C 0.090 3.910 10 C -0.234 4.234 11 C -0.083 4.083 12 C -0.231 4.231 13 C -0.087 4.087 14 C 0.015 3.985 15 N -0.625 5.625 16 C 0.480 3.520 17 O -0.509 6.509 18 C 0.108 3.892 19 N -0.329 5.329 20 C 0.155 3.845 21 C -0.193 4.193 22 N 0.073 4.927 23 O -0.179 6.179 24 O -0.166 6.166 25 C 0.105 3.895 26 N -0.233 5.233 27 H 0.287 0.713 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.408 0.592 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.206 0.794 36 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 -8.787 -6.982 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.174 4.174 3 Si 0.899 3.101 4 H -0.201 1.201 5 H -0.187 1.187 6 H -0.217 1.217 7 C -0.553 4.553 8 H 0.093 0.907 9 C 0.086 3.914 10 C -0.253 4.253 11 C -0.102 4.102 12 C -0.250 4.250 13 C -0.107 4.107 14 C -0.079 4.079 15 N -0.267 5.267 16 C 0.264 3.736 17 O -0.385 6.385 18 C -0.016 4.016 19 N -0.107 5.107 20 C 0.001 3.999 21 C -0.291 4.291 22 N 0.588 4.412 23 O -0.390 6.390 24 O -0.380 6.380 25 C -0.085 4.085 26 N -0.051 5.051 27 H 0.098 0.902 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.244 0.756 33 H 0.153 0.847 34 H 0.147 0.853 35 H 0.222 0.778 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 4.635 -5.310 -6.629 9.676 hybrid contribution -0.729 -2.876 -0.059 2.968 sum 3.906 -8.186 -6.688 11.269 Atomic orbital electron populations 1.70574 1.08096 1.33206 1.31041 1.27270 0.95499 1.04537 0.90084 0.83582 0.75530 0.72928 0.78041 1.20137 1.18734 1.21653 1.20359 0.96662 0.97074 1.41180 0.90743 1.17456 0.92178 0.91191 0.90605 1.20740 0.96590 1.04200 1.03799 1.20433 0.94009 0.97234 0.98504 1.20369 0.98910 1.00117 1.05652 1.21152 0.93877 0.98454 0.97192 1.17644 0.93291 0.96734 1.00225 1.42768 1.28261 1.15726 1.39982 1.20108 0.85096 0.82686 0.85697 1.90700 1.28053 1.75000 1.44750 1.21885 0.92748 0.84755 1.02249 1.48211 1.06017 1.04632 1.51859 1.22325 1.00427 0.83786 0.93360 1.21000 0.96120 0.81796 1.30232 1.42443 1.00354 1.01644 0.96754 1.94540 1.23821 1.66153 1.54475 1.94544 1.18026 1.70836 1.54625 1.24027 1.00249 0.87945 0.96265 1.77966 0.87162 1.18946 1.21076 0.90195 0.87224 0.88597 0.88507 0.85219 0.75577 0.84662 0.85266 0.77774 0.77409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.61 13.66 55.55 0.76 -18.85 16 2 C 0.05 1.11 5.38 -17.33 -0.09 1.01 16 3 Si 1.07 22.31 25.01 -169.99 -4.25 18.05 16 4 H -0.27 -5.51 6.37 56.52 0.36 -5.15 16 5 H -0.26 -5.45 7.10 56.52 0.40 -5.04 16 6 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.52 -12.22 8.75 -37.86 -0.33 -12.55 16 8 H 0.07 1.69 7.20 -52.49 -0.38 1.31 16 9 C 0.09 2.08 5.18 -106.65 -0.55 1.53 16 10 C -0.23 -5.31 7.33 -39.28 -0.29 -5.60 16 11 C -0.08 -1.75 9.97 -39.99 -0.40 -2.15 16 12 C -0.23 -4.85 10.04 -39.36 -0.39 -5.24 16 13 C -0.09 -1.89 8.78 -39.44 -0.35 -2.23 16 14 C 0.01 0.31 6.54 -83.17 -0.54 -0.23 16 15 N -0.63 -10.58 5.18 -9.48 -0.05 -10.62 16 16 C 0.48 7.30 7.70 -10.99 -0.08 7.22 16 17 O -0.51 -9.84 12.60 5.55 0.07 -9.77 16 18 C 0.11 0.99 6.99 -5.19 -0.04 0.95 16 19 N -0.33 -3.61 3.39 -62.54 -0.21 -3.82 16 20 C 0.16 1.47 11.13 -17.23 -0.19 1.27 16 21 C -0.19 -2.22 7.11 -80.38 -0.57 -2.79 16 22 N 0.07 0.95 4.45 33.75 0.15 1.10 16 23 O -0.18 -2.41 19.02 -29.46 -0.56 -2.97 16 24 O -0.17 -2.28 19.05 -29.46 -0.56 -2.84 16 25 C 0.11 1.20 11.75 -17.36 -0.20 0.99 16 26 N -0.23 -3.08 11.66 30.63 0.36 -2.72 16 27 H 0.29 6.69 8.73 -40.82 -0.36 6.34 16 28 H 0.11 2.46 4.35 -52.49 -0.23 2.23 16 29 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 30 H 0.10 1.82 8.06 -52.48 -0.42 1.39 16 31 H 0.13 2.84 5.39 -52.48 -0.28 2.55 16 32 H 0.41 5.94 7.33 -40.82 -0.30 5.65 16 33 H 0.14 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.13 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.21 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.21 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -31.13 322.70 -6.39 -37.52 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -2.92 Total: 7.87 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: -4.04 Total: -17.81 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: 1.00 Total: -34.92 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -1.05 Total: -15.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.25 Total: 18.05 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.13 -6.39 -37.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339166399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.803 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds