Wall clock time and date at job start Tue Mar 31 2020 11:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86807 * 119.99793 * 2 1 4 4 H 1.48498 * 109.47052 * 90.00137 * 3 2 1 5 5 H 1.48500 * 109.46919 * 209.99768 * 3 2 1 6 6 H 1.48495 * 109.47110 * 329.99593 * 3 2 1 7 7 C 1.39952 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00333 * 21.35737 * 7 2 1 9 9 C 1.41077 * 119.99806 * 201.35691 * 7 2 1 10 10 C 1.40734 * 120.30202 * 26.47517 * 9 7 2 11 11 C 1.36461 * 119.94536 * 179.97438 * 10 9 7 12 12 C 1.38863 * 120.57369 * 0.02562 * 11 10 9 13 13 C 1.38220 * 120.62073 * 359.97438 * 12 11 10 14 14 C 1.38649 * 120.02955 * 359.73829 * 13 12 11 15 15 N 1.39126 * 120.28330 * 180.25397 * 14 13 12 16 16 C 1.34780 * 120.00085 * 19.25536 * 15 14 13 17 17 O 1.21283 * 119.99701 * 5.71253 * 16 15 14 18 18 C 1.50694 * 120.00250 * 185.72390 * 16 15 14 19 19 N 1.46505 * 109.47408 * 179.97438 * 18 16 15 20 20 C 1.34943 * 126.03739 * 125.00055 * 19 18 16 21 21 C 1.35314 * 107.74592 * 179.97438 * 20 19 18 22 22 N 1.48021 * 126.04073 * 179.97438 * 21 20 19 23 23 O 1.21799 * 120.00129 * 359.97438 * 22 21 20 24 24 O 1.21799 * 120.00035 * 179.97438 * 22 21 20 25 25 C 1.39870 * 107.92240 * 359.97438 * 21 20 19 26 26 N 1.30842 * 108.20032 * 359.74257 * 25 21 20 27 27 H 0.96998 * 120.00180 * 174.94159 * 1 2 3 28 28 H 1.08002 * 120.02401 * 359.95413 * 10 9 7 29 29 H 1.07996 * 119.71207 * 179.97438 * 11 10 9 30 30 H 1.08003 * 119.68792 * 179.97438 * 12 11 10 31 31 H 1.08004 * 119.98510 * 180.02562 * 13 12 11 32 32 H 0.96996 * 120.00296 * 199.24601 * 15 14 13 33 33 H 1.09000 * 109.47161 * 299.99892 * 18 16 15 34 34 H 1.09005 * 109.47223 * 59.99346 * 18 16 15 35 35 H 1.08002 * 126.12568 * 359.97438 * 20 19 18 36 36 H 1.08001 * 125.90412 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4900 2.0465 1.4001 5 1 3.5400 1.4402 -0.7000 6 1 1.4399 2.6527 -0.7001 7 6 2.0083 -1.2120 -0.0005 8 1 1.5239 -2.1151 -0.3416 9 6 3.3464 -1.2541 0.4444 10 6 3.8167 -0.3053 1.3713 11 6 5.1123 -0.3531 1.7971 12 6 5.9758 -1.3319 1.3233 13 6 5.5388 -2.2754 0.4126 14 6 4.2260 -2.2541 -0.0326 15 7 3.7791 -3.2044 -0.9452 16 6 4.4620 -4.3548 -1.1091 17 8 5.4051 -4.6078 -0.3896 18 6 4.0540 -5.3264 -2.1863 19 7 4.9462 -6.4881 -2.1596 20 6 4.5667 -7.7782 -2.0479 21 6 5.6849 -8.5400 -2.0629 22 7 5.7346 -10.0160 -1.9638 23 8 4.7029 -10.6543 -1.8567 24 8 6.8074 -10.5923 -1.9894 25 6 6.7856 -7.6861 -2.1887 26 7 6.3437 -6.4563 -2.2526 27 1 -0.4850 -0.8367 -0.0741 28 1 3.1528 0.4602 1.7450 29 1 5.4693 0.3771 2.5082 30 1 6.9985 -1.3562 1.6697 31 1 6.2192 -3.0324 0.0512 32 1 2.9760 -3.0392 -1.4635 33 1 3.0282 -5.6516 -2.0127 34 1 4.1210 -4.8394 -3.1592 35 1 3.5521 -8.1383 -1.9619 36 1 7.8213 -7.9898 -2.2300 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339166399.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:07 Heat of formation + Delta-G solvation = 53.567769 kcal Electronic energy + Delta-G solvation = -24924.265994 eV Core-core repulsion = 20992.181276 eV Total energy + Delta-G solvation = -3932.084718 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.47519 -42.46598 -41.35984 -39.21935 -37.56088 -35.76126 -35.64727 -34.94313 -32.36653 -32.14077 -31.04286 -29.17004 -26.91533 -26.46872 -24.22642 -23.23323 -22.68895 -22.17226 -21.35993 -20.21136 -20.09408 -19.53003 -18.72298 -18.54951 -18.31184 -17.50455 -16.84995 -16.59363 -16.31031 -15.98856 -15.80178 -15.24750 -14.96735 -14.53476 -14.47238 -14.42404 -14.00757 -13.85044 -13.36406 -12.86970 -12.72471 -12.64286 -12.58901 -12.29349 -12.24011 -12.05542 -11.71630 -11.56507 -11.29435 -11.25628 -10.94682 -10.75672 -10.42405 -9.66758 -9.30846 -8.85861 -6.50674 -0.83025 0.12405 0.37946 0.59766 0.81531 1.08794 1.22995 1.40944 1.49811 1.62247 1.78359 2.07941 2.17687 2.63029 3.01598 3.30924 3.42082 3.48642 3.61386 3.93166 3.98240 4.06267 4.32291 4.41842 4.63038 4.71176 4.82911 4.96134 5.11143 5.18536 5.35302 5.42760 5.52962 5.62164 5.85341 5.93916 5.98625 6.01433 6.35638 6.53370 6.59271 6.61334 6.81403 7.13212 8.00662 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.024892 B = 0.002883 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.590246 B = 9708.828148 C =10443.919179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.022 3.978 3 Si 1.097 2.903 4 H -0.265 1.265 5 H -0.265 1.265 6 H -0.284 1.284 7 C -0.537 4.537 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.250 4.250 11 C -0.092 4.092 12 C -0.228 4.228 13 C -0.107 4.107 14 C 0.020 3.980 15 N -0.629 5.629 16 C 0.480 3.520 17 O -0.551 6.551 18 C 0.116 3.884 19 N -0.335 5.335 20 C 0.179 3.821 21 C -0.213 4.213 22 N 0.076 4.924 23 O -0.182 6.182 24 O -0.195 6.195 25 C 0.108 3.892 26 N -0.274 5.274 27 H 0.283 0.717 28 H 0.109 0.891 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.128 0.872 32 H 0.419 0.581 33 H 0.187 0.813 34 H 0.162 0.838 35 H 0.248 0.752 36 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.990 -9.138 -7.580 12.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.195 4.195 3 Si 0.920 3.080 4 H -0.192 1.192 5 H -0.189 1.189 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.269 4.269 11 C -0.110 4.110 12 C -0.247 4.247 13 C -0.128 4.128 14 C -0.075 4.075 15 N -0.272 5.272 16 C 0.268 3.732 17 O -0.429 6.429 18 C -0.007 4.007 19 N -0.112 5.112 20 C 0.025 3.975 21 C -0.311 4.311 22 N 0.587 4.413 23 O -0.394 6.394 24 O -0.403 6.403 25 C -0.082 4.082 26 N -0.093 5.093 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.257 0.743 33 H 0.205 0.795 34 H 0.179 0.821 35 H 0.264 0.736 36 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 4.534 -5.694 -7.248 10.272 hybrid contribution -0.582 -2.859 0.144 2.921 sum 3.952 -8.553 -7.104 11.800 Atomic orbital electron populations 1.70624 1.08552 1.33081 1.33496 1.27954 0.95588 1.06350 0.89575 0.83265 0.74806 0.71385 0.78545 1.19153 1.18940 1.21081 1.20363 0.96974 0.97065 1.42205 0.91027 1.17671 0.92461 0.92311 0.91372 1.20938 0.97488 1.04414 1.04109 1.20729 0.93421 0.97904 0.98958 1.20743 0.99985 0.99323 1.04656 1.21320 0.94204 0.99014 0.98212 1.17821 0.92964 0.96739 0.99940 1.42809 1.29031 1.15841 1.39530 1.21122 0.83642 0.82513 0.85967 1.90681 1.29739 1.75849 1.46643 1.22157 0.94409 0.83199 1.00935 1.48353 1.05512 1.05534 1.51826 1.22981 1.01592 0.82747 0.90225 1.21146 0.97173 0.80761 1.32048 1.42610 1.00065 1.02315 0.96317 1.94517 1.23749 1.66769 1.54340 1.94544 1.18232 1.71491 1.56048 1.24365 1.01255 0.87579 0.95023 1.77929 0.88848 1.19802 1.22686 0.90545 0.87352 0.85697 0.86352 0.85479 0.74276 0.79540 0.82068 0.73607 0.75910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.73 13.66 21.83 0.30 -40.43 16 2 C 0.02 1.02 5.38 85.25 0.46 1.48 16 3 Si 1.10 44.53 25.01 68.60 1.72 46.24 16 4 H -0.27 -10.27 6.37 99.48 0.63 -9.63 16 5 H -0.26 -10.70 7.10 99.48 0.71 -10.00 16 6 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.54 -24.96 8.75 23.38 0.20 -24.75 16 8 H 0.07 3.25 7.20 -2.91 -0.02 3.23 16 9 C 0.07 3.02 5.18 -21.18 -0.11 2.91 16 10 C -0.25 -11.14 7.33 22.46 0.16 -10.97 16 11 C -0.09 -3.70 9.97 22.00 0.22 -3.48 16 12 C -0.23 -9.19 10.04 22.42 0.22 -8.97 16 13 C -0.11 -4.57 8.78 22.36 0.20 -4.37 16 14 C 0.02 0.85 6.54 38.88 0.25 1.11 16 15 N -0.63 -20.25 5.18 -302.28 -1.57 -21.82 16 16 C 0.48 13.56 7.70 87.65 0.68 14.23 16 17 O -0.55 -20.65 12.60 -3.04 -0.04 -20.68 16 18 C 0.12 1.64 6.99 85.63 0.60 2.24 16 19 N -0.33 -6.25 3.39 -351.79 -1.19 -7.45 16 20 C 0.18 2.74 11.13 83.54 0.93 3.67 16 21 C -0.21 -4.45 7.11 36.09 0.26 -4.20 16 22 N 0.08 1.88 4.45 -47.13 -0.21 1.67 16 23 O -0.18 -4.58 19.02 18.89 0.36 -4.22 16 24 O -0.20 -5.30 19.05 18.89 0.36 -4.94 16 25 C 0.11 2.32 11.75 85.24 1.00 3.32 16 26 N -0.27 -6.80 11.66 -57.02 -0.66 -7.46 16 27 H 0.28 13.41 8.73 -92.71 -0.81 12.61 16 28 H 0.11 4.77 4.35 -2.91 -0.01 4.76 16 29 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.12 4.18 8.06 -2.91 -0.02 4.15 16 31 H 0.13 5.50 5.39 -2.91 -0.02 5.48 16 32 H 0.42 11.45 7.33 -92.71 -0.68 10.77 16 33 H 0.19 0.78 8.07 -2.39 -0.02 0.76 16 34 H 0.16 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.25 1.43 8.06 -2.91 -0.02 1.40 16 36 H 0.22 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -69.08 322.70 4.51 -64.57 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.38 Total: 22.29 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 5.07 Total: -27.78 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -3.34 Total: -75.49 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: 0.68 Total: -29.85 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.72 Total: 46.24 kcal Total: -69.08 4.51 -64.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339166399.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.138 kcal (2) G-P(sol) polarization free energy of solvation -69.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds