Wall clock time and date at job start Tue Mar 31 2020 11:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46926 * 269.99639 * 3 2 1 5 5 H 1.48497 * 109.47187 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.46748 * 150.00145 * 3 2 1 7 7 C 1.39014 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99751 * 184.54608 * 7 2 1 9 9 N 1.36891 * 120.00052 * 4.54142 * 7 2 1 10 10 C 1.38214 * 125.61782 * 128.93779 * 9 7 2 11 11 C 1.46887 * 125.43582 * 359.96303 * 10 9 7 12 12 O 1.21663 * 120.00156 * 185.68647 * 11 10 9 13 13 N 1.34782 * 120.00202 * 5.68161 * 11 10 9 14 14 C 1.46495 * 119.99904 * 184.62615 * 13 11 10 15 15 H 1.08993 * 108.85151 * 323.79655 * 14 13 11 16 16 C 1.52948 * 108.88569 * 205.35300 * 14 13 11 17 17 C 1.55158 * 108.95884 * 209.10494 * 16 14 13 18 18 S 1.83990 * 100.90949 * 41.44356 * 17 16 14 19 19 C 1.53704 * 108.88833 * 82.37369 * 14 13 11 20 20 C 1.36117 * 109.12700 * 180.22709 * 10 9 7 21 21 C 1.41706 * 107.74741 * 359.63683 * 20 10 9 22 22 C 1.40026 * 133.35137 * 180.02562 * 21 20 10 23 23 C 1.36570 * 119.82923 * 180.27368 * 22 21 20 24 24 C 1.38855 * 120.60302 * 0.04335 * 23 22 21 25 25 C 1.37848 * 120.63169 * 359.97438 * 24 23 22 26 26 C 1.37834 * 125.61871 * 308.93748 * 9 7 2 27 27 H 0.97005 * 119.99618 * 5.00784 * 1 2 3 28 28 H 0.97002 * 119.99464 * 4.90446 * 13 11 10 29 29 H 1.08992 * 109.60246 * 329.04095 * 16 14 13 30 30 H 1.08997 * 109.59922 * 89.17638 * 16 14 13 31 31 H 1.08997 * 111.13167 * 283.53100 * 17 16 14 32 32 H 1.08998 * 111.12300 * 159.35003 * 17 16 14 33 33 H 1.08993 * 110.34589 * 242.48858 * 19 14 13 34 34 H 1.09004 * 110.34333 * 4.64275 * 19 14 13 35 35 H 1.07997 * 126.12890 * 179.77261 * 20 10 9 36 36 H 1.08001 * 120.08153 * 0.32374 * 22 21 20 37 37 H 1.08004 * 119.70020 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.68572 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.08936 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4951 2.0463 -1.4001 5 1 1.4450 2.6526 0.7000 6 1 3.5451 1.4400 0.7000 7 6 2.0085 -1.2040 0.0005 8 1 3.0860 -1.2054 0.0747 9 7 1.3272 -2.3876 -0.0928 10 6 1.5971 -3.4030 -0.9908 11 6 2.6630 -3.3853 -2.0013 12 8 2.7485 -4.2892 -2.8112 13 7 3.5463 -2.3678 -2.0314 14 6 4.5461 -2.2971 -3.0997 15 1 4.8712 -3.3080 -3.3453 16 6 5.7515 -1.5006 -2.5978 17 6 6.4295 -0.7986 -3.8040 18 16 4.9569 -0.2202 -4.7431 19 6 3.9011 -1.6658 -4.3439 20 6 0.7137 -4.4196 -0.7932 21 6 -0.1439 -4.0458 0.2712 22 6 -1.2220 -4.6769 0.9039 23 6 -1.8735 -4.0469 1.9255 24 6 -1.4776 -2.7834 2.3438 25 6 -0.4195 -2.1419 1.7363 26 6 0.2591 -2.7631 0.6932 27 1 -0.4850 0.8369 -0.0733 28 1 3.5225 -1.6844 -1.3433 29 1 5.4212 -0.7524 -1.8775 30 1 6.4623 -2.1751 -2.1204 31 1 7.0170 -1.5050 -4.3904 32 1 7.0415 0.0418 -3.4762 33 1 3.9008 -2.3748 -5.1717 34 1 2.8837 -1.3439 -4.1213 35 1 0.6749 -5.3461 -1.3468 36 1 -1.5369 -5.6596 0.5852 37 1 -2.7045 -4.5357 2.4123 38 1 -2.0036 -2.2987 3.1529 39 1 -0.1192 -1.1592 2.0684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610295708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:27 Heat of formation + Delta-G solvation = 23.937005 kcal Electronic energy + Delta-G solvation = -24204.046471 eV Core-core repulsion = 20816.970081 eV Total energy + Delta-G solvation = -3387.076390 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.55682 -38.93542 -36.33843 -35.93810 -33.67063 -32.41686 -30.77224 -29.42734 -28.78801 -27.88997 -25.11938 -25.04423 -22.91202 -21.02110 -20.69420 -20.06952 -19.31531 -18.20313 -16.86144 -16.52862 -15.95409 -15.66620 -15.11462 -14.86623 -14.57209 -14.36432 -14.06228 -13.76237 -13.17631 -13.07209 -12.95647 -12.82446 -12.52348 -12.29712 -11.96597 -11.93293 -11.87296 -11.69691 -11.59559 -11.20690 -10.94395 -10.79239 -10.68172 -10.19641 -10.04321 -9.78877 -9.49011 -9.32983 -8.72831 -8.63373 -7.67444 -7.20552 -6.89679 -6.61916 -4.81571 1.79070 1.83068 2.31384 2.74156 2.88837 2.93968 2.97404 3.07754 3.62249 3.66689 4.19502 4.46562 4.51369 4.56953 4.75396 4.93816 5.02668 5.03781 5.17993 5.40486 5.50587 5.65029 5.70498 5.82478 5.94321 5.96982 6.02858 6.13600 6.39271 6.55692 6.66373 6.76481 6.84597 6.90713 7.07569 7.09774 7.44620 7.54662 7.63094 7.86446 7.88630 8.09648 8.29944 8.58769 8.84880 9.22571 10.09607 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.005153 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.640340 B = 5432.145595 C = 6854.028488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.065 3.935 3 Si 0.918 3.082 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.377 4.377 8 H 0.102 0.898 9 N -0.264 5.264 10 C -0.018 4.018 11 C 0.599 3.401 12 O -0.556 6.556 13 N -0.722 5.722 14 C 0.139 3.861 15 H 0.095 0.905 16 C -0.134 4.134 17 C -0.064 4.064 18 S -0.302 6.302 19 C -0.074 4.074 20 C -0.162 4.162 21 C -0.136 4.136 22 C -0.087 4.087 23 C -0.159 4.159 24 C -0.147 4.147 25 C -0.051 4.051 26 C 0.113 3.887 27 H 0.283 0.717 28 H 0.415 0.585 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.132 0.868 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.461 0.148 -1.245 7.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.149 4.149 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.185 1.185 7 C -0.504 4.504 8 H 0.119 0.881 9 N 0.071 4.929 10 C -0.132 4.132 11 C 0.389 3.611 12 O -0.435 6.435 13 N -0.383 5.383 14 C 0.032 3.968 15 H 0.113 0.887 16 C -0.173 4.173 17 C -0.213 4.213 18 S -0.077 6.077 19 C -0.223 4.223 20 C -0.190 4.190 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.179 4.179 24 C -0.168 4.168 25 C -0.071 4.071 26 C -0.002 4.002 27 H 0.094 0.906 28 H 0.262 0.738 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.358 1.024 -2.432 7.817 hybrid contribution 0.294 0.295 0.815 0.915 sum 7.652 1.319 -1.617 7.932 Atomic orbital electron populations 1.69922 1.06283 1.29637 1.38732 1.25711 0.95674 1.00346 0.93179 0.86034 0.79772 0.80224 0.79822 1.18670 1.19831 1.18516 1.19336 0.91706 0.81641 1.57749 0.88060 1.39872 1.22081 1.11197 1.19780 1.20105 1.01836 0.94059 0.97205 1.17308 0.80168 0.80866 0.82785 1.90717 1.74189 1.37283 1.41307 1.46890 1.32696 1.28921 1.29770 1.21352 0.87872 1.00847 0.86759 0.88692 1.22621 0.96311 1.00152 0.98233 1.24245 0.96954 1.02895 0.97197 1.87857 1.14751 1.33960 1.71117 1.24541 1.01826 0.95649 1.00317 1.20413 0.97679 0.99526 1.01373 1.18060 0.99800 0.95633 1.00525 1.20059 0.95455 0.98633 0.96494 1.20281 1.01413 0.96391 0.99770 1.20594 0.98600 0.95927 1.01636 1.20081 0.94635 0.98325 0.94068 1.18347 0.93857 0.92971 0.94997 0.90564 0.73839 0.89510 0.89234 0.88900 0.87389 0.88689 0.87478 0.84993 0.87760 0.87909 0.87663 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -19.93 10.66 55.50 0.59 -19.34 16 2 C 0.07 1.49 5.17 -17.47 -0.09 1.40 16 3 Si 0.92 17.31 29.56 -169.99 -5.02 12.28 16 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.38 -8.67 7.89 -15.01 -0.12 -8.79 16 8 H 0.10 2.14 6.04 -52.49 -0.32 1.82 16 9 N -0.26 -6.40 2.79 -56.08 -0.16 -6.56 16 10 C -0.02 -0.42 6.77 -82.25 -0.56 -0.97 16 11 C 0.60 12.86 7.69 -12.76 -0.10 12.76 16 12 O -0.56 -12.62 16.48 5.22 0.09 -12.53 16 13 N -0.72 -13.11 4.78 -54.72 -0.26 -13.37 16 14 C 0.14 2.05 2.97 -67.59 -0.20 1.85 16 15 H 0.10 1.42 7.52 -51.93 -0.39 1.03 16 16 C -0.13 -1.55 5.97 -25.62 -0.15 -1.70 16 17 C -0.06 -0.66 7.52 38.30 0.29 -0.38 16 18 S -0.30 -4.27 23.23 -107.50 -2.50 -6.76 16 19 C -0.07 -1.12 7.06 37.52 0.26 -0.86 16 20 C -0.16 -3.71 10.55 -39.02 -0.41 -4.13 16 21 C -0.14 -3.13 6.16 -106.89 -0.66 -3.79 16 22 C -0.09 -1.77 10.06 -39.51 -0.40 -2.16 16 23 C -0.16 -3.02 9.97 -39.96 -0.40 -3.42 16 24 C -0.15 -2.93 10.02 -39.50 -0.40 -3.33 16 25 C -0.05 -1.17 8.60 -39.41 -0.34 -1.51 16 26 C 0.11 2.75 6.02 -83.84 -0.50 2.25 16 27 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 28 H 0.42 7.65 4.09 -40.82 -0.17 7.48 16 29 H 0.09 1.06 7.69 -51.93 -0.40 0.66 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.11 1.87 7.89 -51.93 -0.41 1.46 16 35 H 0.13 2.79 8.06 -52.49 -0.42 2.36 16 36 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 37 H 0.10 1.62 8.06 -52.48 -0.42 1.19 16 38 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.12 2.73 6.95 -52.49 -0.36 2.36 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -27.59 334.54 -10.56 -38.15 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -4.57 Total: 15.87 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -3.77 Total: -12.77 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.17 Total: -39.27 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.09 Total: -12.53 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -5.02 Total: 12.28 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -2.50 Total: -6.76 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.59 -10.56 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610295708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.084 kcal (2) G-P(sol) polarization free energy of solvation -27.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds