Wall clock time and date at job start Tue Mar 31 2020 11:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86797 * 120.00001 * 2 1 4 4 H 1.48503 * 109.46926 * 269.99639 * 3 2 1 5 5 H 1.48497 * 109.47187 * 29.99797 * 3 2 1 6 6 H 1.48504 * 109.46748 * 150.00145 * 3 2 1 7 7 C 1.39014 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99751 * 184.54608 * 7 2 1 9 9 N 1.36891 * 120.00052 * 4.54142 * 7 2 1 10 10 C 1.38214 * 125.61782 * 128.93779 * 9 7 2 11 11 C 1.46887 * 125.43582 * 359.96303 * 10 9 7 12 12 O 1.21663 * 120.00156 * 185.68647 * 11 10 9 13 13 N 1.34782 * 120.00202 * 5.68161 * 11 10 9 14 14 C 1.46495 * 119.99904 * 184.62615 * 13 11 10 15 15 H 1.08993 * 108.85151 * 323.79655 * 14 13 11 16 16 C 1.52948 * 108.88569 * 205.35300 * 14 13 11 17 17 C 1.55158 * 108.95884 * 209.10494 * 16 14 13 18 18 S 1.83990 * 100.90949 * 41.44356 * 17 16 14 19 19 C 1.53704 * 108.88833 * 82.37369 * 14 13 11 20 20 C 1.36117 * 109.12700 * 180.22709 * 10 9 7 21 21 C 1.41706 * 107.74741 * 359.63683 * 20 10 9 22 22 C 1.40026 * 133.35137 * 180.02562 * 21 20 10 23 23 C 1.36570 * 119.82923 * 180.27368 * 22 21 20 24 24 C 1.38855 * 120.60302 * 0.04335 * 23 22 21 25 25 C 1.37848 * 120.63169 * 359.97438 * 24 23 22 26 26 C 1.37834 * 125.61871 * 308.93748 * 9 7 2 27 27 H 0.97005 * 119.99618 * 5.00784 * 1 2 3 28 28 H 0.97002 * 119.99464 * 4.90446 * 13 11 10 29 29 H 1.08992 * 109.60246 * 329.04095 * 16 14 13 30 30 H 1.08997 * 109.59922 * 89.17638 * 16 14 13 31 31 H 1.08997 * 111.13167 * 283.53100 * 17 16 14 32 32 H 1.08998 * 111.12300 * 159.35003 * 17 16 14 33 33 H 1.08993 * 110.34589 * 242.48858 * 19 14 13 34 34 H 1.09004 * 110.34333 * 4.64275 * 19 14 13 35 35 H 1.07997 * 126.12890 * 179.77261 * 20 10 9 36 36 H 1.08001 * 120.08153 * 0.32374 * 22 21 20 37 37 H 1.08004 * 119.70020 * 180.02562 * 23 22 21 38 38 H 1.07997 * 119.68572 * 179.97438 * 24 23 22 39 39 H 1.07995 * 120.08936 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4951 2.0463 -1.4001 5 1 1.4450 2.6526 0.7000 6 1 3.5451 1.4400 0.7000 7 6 2.0085 -1.2040 0.0005 8 1 3.0860 -1.2054 0.0747 9 7 1.3272 -2.3876 -0.0928 10 6 1.5971 -3.4030 -0.9908 11 6 2.6630 -3.3853 -2.0013 12 8 2.7485 -4.2892 -2.8112 13 7 3.5463 -2.3678 -2.0314 14 6 4.5461 -2.2971 -3.0997 15 1 4.8712 -3.3080 -3.3453 16 6 5.7515 -1.5006 -2.5978 17 6 6.4295 -0.7986 -3.8040 18 16 4.9569 -0.2202 -4.7431 19 6 3.9011 -1.6658 -4.3439 20 6 0.7137 -4.4196 -0.7932 21 6 -0.1439 -4.0458 0.2712 22 6 -1.2220 -4.6769 0.9039 23 6 -1.8735 -4.0469 1.9255 24 6 -1.4776 -2.7834 2.3438 25 6 -0.4195 -2.1419 1.7363 26 6 0.2591 -2.7631 0.6932 27 1 -0.4850 0.8369 -0.0733 28 1 3.5225 -1.6844 -1.3433 29 1 5.4212 -0.7524 -1.8775 30 1 6.4623 -2.1751 -2.1204 31 1 7.0170 -1.5050 -4.3904 32 1 7.0415 0.0418 -3.4762 33 1 3.9008 -2.3748 -5.1717 34 1 2.8837 -1.3439 -4.1213 35 1 0.6749 -5.3461 -1.3468 36 1 -1.5369 -5.6596 0.5852 37 1 -2.7045 -4.5357 2.4123 38 1 -2.0036 -2.2987 3.1529 39 1 -0.1192 -1.1592 2.0684 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610295708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:26 Heat of formation + Delta-G solvation = 10.362731 kcal Electronic energy + Delta-G solvation = -24204.635096 eV Core-core repulsion = 20816.970081 eV Total energy + Delta-G solvation = -3387.665014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.24163 -40.48905 -37.70418 -37.55325 -35.37573 -33.76259 -32.47879 -30.82813 -30.27440 -29.46248 -26.84323 -26.26524 -24.35589 -22.70155 -22.02065 -21.60690 -20.95759 -19.85210 -18.32677 -17.78929 -17.37394 -17.28186 -16.56778 -16.40377 -16.14601 -15.76849 -15.53677 -14.99552 -14.76910 -14.71418 -14.56531 -14.33843 -13.87218 -13.60611 -13.42216 -13.26625 -13.22311 -13.07165 -12.94544 -12.73474 -12.32845 -12.18626 -12.02922 -11.80485 -11.43410 -11.23236 -11.07359 -11.02384 -10.36376 -10.17831 -8.91932 -8.79297 -8.61813 -8.32355 -6.59472 0.10922 0.76447 1.11853 1.25844 1.35525 1.38687 1.44415 1.48142 2.06196 2.19650 2.49428 2.78678 2.85903 3.35937 3.45897 3.71055 3.87978 3.91384 4.04265 4.17351 4.23519 4.43690 4.48246 4.54955 4.58843 4.70919 4.74873 4.86904 4.90295 4.93065 5.01885 5.06474 5.19859 5.36724 5.44399 5.45664 5.76679 5.90694 5.97396 6.19601 6.22911 6.50589 6.58316 6.87952 7.20510 7.49031 8.38268 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015134 B = 0.005153 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.640340 B = 5432.145595 C = 6854.028488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.028 3.972 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.242 1.242 7 C -0.390 4.390 8 H 0.115 0.885 9 N -0.277 5.277 10 C -0.042 4.042 11 C 0.596 3.404 12 O -0.576 6.576 13 N -0.712 5.712 14 C 0.136 3.864 15 H 0.096 0.904 16 C -0.130 4.130 17 C -0.044 4.044 18 S -0.338 6.338 19 C -0.070 4.070 20 C -0.176 4.176 21 C -0.157 4.157 22 C -0.093 4.093 23 C -0.153 4.153 24 C -0.137 4.137 25 C -0.079 4.079 26 C 0.082 3.918 27 H 0.283 0.717 28 H 0.414 0.586 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 0.308 -0.478 8.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.183 4.183 3 Si 0.802 3.198 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.164 1.164 7 C -0.517 4.517 8 H 0.132 0.868 9 N 0.057 4.943 10 C -0.156 4.156 11 C 0.385 3.615 12 O -0.457 6.457 13 N -0.371 5.371 14 C 0.029 3.971 15 H 0.114 0.886 16 C -0.169 4.169 17 C -0.192 4.192 18 S -0.113 6.113 19 C -0.219 4.219 20 C -0.204 4.204 21 C -0.161 4.161 22 C -0.112 4.112 23 C -0.172 4.172 24 C -0.158 4.158 25 C -0.099 4.099 26 C -0.032 4.032 27 H 0.093 0.907 28 H 0.260 0.740 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.151 0.849 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.154 0.846 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.586 1.188 -1.660 8.825 hybrid contribution -0.132 0.189 0.619 0.660 sum 8.454 1.377 -1.041 8.629 Atomic orbital electron populations 1.70041 1.07847 1.30249 1.40101 1.26558 0.96230 1.03194 0.92329 0.85083 0.79270 0.75952 0.79476 1.19102 1.20057 1.16448 1.19759 0.92461 0.81743 1.57700 0.86782 1.40081 1.22440 1.11629 1.20109 1.20521 1.02875 0.94308 0.97924 1.17208 0.80440 0.81484 0.82318 1.90685 1.74850 1.38204 1.41962 1.46829 1.32435 1.27573 1.30227 1.21663 0.88087 1.01667 0.85645 0.88647 1.22623 0.95335 1.00246 0.98705 1.24426 0.95028 1.03957 0.95756 1.87979 1.17200 1.33936 1.72229 1.24373 1.00573 0.96260 1.00736 1.20655 0.97989 0.99964 1.01779 1.18443 1.00974 0.95723 1.00995 1.20471 0.94470 0.99842 0.96432 1.20739 1.01791 0.95743 0.98890 1.21025 0.97123 0.96234 1.01378 1.20140 0.96432 0.98294 0.95063 1.18807 0.94537 0.93990 0.95884 0.90687 0.73971 0.89933 0.86494 0.86501 0.84905 0.88275 0.90557 0.84025 0.84915 0.83681 0.84630 0.88063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -42.87 10.66 21.67 0.23 -42.64 16 2 C 0.03 1.27 5.17 84.95 0.44 1.71 16 3 Si 0.98 35.51 29.56 68.60 2.03 37.54 16 4 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.28 -9.98 7.11 99.48 0.71 -9.28 16 6 H -0.24 -7.90 7.11 99.48 0.71 -7.19 16 7 C -0.39 -18.32 7.89 84.09 0.66 -17.65 16 8 H 0.12 4.85 6.04 -2.91 -0.02 4.84 16 9 N -0.28 -13.86 2.79 -331.35 -0.93 -14.79 16 10 C -0.04 -2.04 6.77 39.91 0.27 -1.77 16 11 C 0.60 26.33 7.69 86.51 0.67 27.00 16 12 O -0.58 -26.77 16.48 -4.23 -0.07 -26.84 16 13 N -0.71 -26.10 4.78 -445.28 -2.13 -28.23 16 14 C 0.14 3.90 2.97 45.21 0.13 4.03 16 15 H 0.10 2.76 7.52 -2.39 -0.02 2.75 16 16 C -0.13 -2.66 5.97 31.32 0.19 -2.47 16 17 C -0.04 -0.76 7.52 72.72 0.55 -0.21 16 18 S -0.34 -9.17 23.23 -56.49 -1.31 -10.48 16 19 C -0.07 -2.14 7.06 72.22 0.51 -1.63 16 20 C -0.18 -8.30 10.55 22.63 0.24 -8.06 16 21 C -0.16 -7.34 6.16 -21.33 -0.13 -7.47 16 22 C -0.09 -3.64 10.06 22.31 0.22 -3.41 16 23 C -0.15 -5.39 9.97 22.03 0.22 -5.17 16 24 C -0.14 -5.27 10.02 22.33 0.22 -5.05 16 25 C -0.08 -3.68 8.60 22.38 0.19 -3.49 16 26 C 0.08 4.10 6.02 39.06 0.24 4.34 16 27 H 0.28 13.39 8.31 -92.70 -0.77 12.62 16 28 H 0.41 15.35 4.09 -92.71 -0.38 14.97 16 29 H 0.08 1.81 7.69 -2.39 -0.02 1.79 16 30 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.08 2.79 7.89 -2.38 -0.02 2.77 16 35 H 0.14 6.15 8.06 -2.91 -0.02 6.13 16 36 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 37 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 38 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 39 H 0.10 4.90 6.95 -2.91 -0.02 4.88 16 Total: -1.00 -62.36 334.54 3.15 -59.22 By element: Atomic # 1 Polarization: 44.81 SS G_CDS: 0.71 Total: 45.52 kcal Atomic # 6 Polarization: -23.91 SS G_CDS: 4.62 Total: -19.29 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -2.83 Total: -85.66 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.07 Total: -26.84 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 16 Polarization: -9.17 SS G_CDS: -1.31 Total: -10.48 kcal Total: -62.36 3.15 -59.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610295708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.581 kcal (2) G-P(sol) polarization free energy of solvation -62.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds