Wall clock time and date at job start Tue Mar 31 2020 10:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31310 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48498 * 109.47149 * 270.00024 * 3 2 1 5 5 H 1.48497 * 109.47006 * 30.00222 * 3 2 1 6 6 H 1.48499 * 109.47123 * 149.99844 * 3 2 1 7 7 C 1.38972 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00467 * 179.97438 * 7 2 1 9 9 N 1.37315 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.36537 * 126.06313 * 179.71434 * 9 7 2 11 11 C 1.35691 * 107.49616 * 179.90157 * 10 9 7 12 12 N 1.40513 * 126.08299 * 180.10135 * 11 10 9 13 13 C 1.39013 * 119.99920 * 180.28246 * 12 11 10 14 14 N 1.32441 * 119.59255 * 359.72755 * 13 12 11 15 15 C 1.31809 * 121.76843 * 179.74933 * 14 13 12 16 16 C 1.39162 * 120.73257 * 0.52230 * 15 14 13 17 17 C 1.48418 * 120.43554 * 179.72031 * 16 15 14 18 18 N 1.34061 * 126.67254 * 179.71221 * 17 16 15 19 19 N 1.28988 * 107.26644 * 179.89252 * 18 17 16 20 20 N 1.28729 * 108.94640 * 0.37783 * 19 18 17 21 21 H 0.97005 * 125.33588 * 179.73622 * 20 19 18 22 22 N 1.28868 * 109.32500 * 359.75692 * 20 19 18 23 23 C 1.39932 * 119.12036 * 359.75226 * 16 15 14 24 24 C 1.38249 * 118.38693 * 359.97438 * 23 16 15 25 25 F 1.35096 * 120.41642 * 180.02562 * 24 23 16 26 26 C 1.40686 * 107.83197 * 0.36469 * 11 10 9 27 27 N 1.30900 * 108.39157 * 359.77124 * 26 11 10 28 28 H 0.96998 * 119.99838 * 359.97438 * 1 2 3 29 29 H 1.07998 * 126.25245 * 0.03723 * 10 9 7 30 30 H 0.96998 * 119.99786 * 0.28237 * 12 11 10 31 31 H 1.07995 * 119.63738 * 180.27301 * 15 14 13 32 32 H 1.07998 * 120.80543 * 179.97438 * 23 16 15 33 33 H 1.07998 * 125.80149 * 179.80740 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3131 0.0000 0.0000 3 14 2.2472 1.6177 0.0000 4 1 2.4947 2.0464 -1.4000 5 1 1.4447 2.6526 0.7001 6 1 3.5447 1.4401 0.7001 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2037 -0.0010 9 7 1.3213 -2.3927 -0.0005 10 6 1.8752 -3.6407 -0.0065 11 6 0.8578 -4.5385 -0.0020 12 7 0.9888 -5.9376 -0.0036 13 6 -0.1451 -6.7418 -0.0043 14 7 -1.3448 -6.1808 0.0021 15 6 -2.4481 -6.9019 -0.0032 16 6 -2.3890 -8.2923 -0.0049 17 6 -3.6355 -9.0979 -0.0046 18 7 -3.7244 -10.4355 -0.0115 19 7 -4.9788 -10.7359 -0.0061 20 7 -5.6688 -9.6492 -0.0043 21 1 -6.6376 -9.5997 -0.0041 22 7 -4.8708 -8.6373 -0.0033 23 6 -1.1387 -8.9207 -0.0062 24 6 -0.0052 -8.1291 -0.0063 25 9 1.2226 -8.6927 -0.0080 26 6 -0.3514 -3.8195 -0.0014 27 7 -0.0715 -2.5408 -0.0006 28 1 -0.4850 0.8400 0.0004 29 1 2.9303 -3.8711 -0.0116 30 1 1.8704 -6.3421 -0.0042 31 1 -3.4087 -6.4084 -0.0022 32 1 -1.0610 -9.9979 -0.0071 33 1 -1.3421 -4.2495 -0.0012 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581859708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:40 Heat of formation + Delta-G solvation = 217.035636 kcal Electronic energy + Delta-G solvation = -24308.324098 eV Core-core repulsion = 20324.453076 eV Total energy + Delta-G solvation = -3983.871022 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.089 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.73741 -44.50334 -40.19558 -39.30580 -35.78921 -34.40181 -33.61409 -33.18201 -31.89522 -30.33747 -29.73646 -27.43815 -25.21330 -24.91035 -24.20258 -23.12627 -21.94327 -20.66842 -19.72482 -19.28647 -18.17209 -17.35441 -17.25644 -17.20738 -16.33201 -15.72880 -15.53557 -15.18858 -14.88198 -14.36157 -14.04479 -13.90825 -13.80765 -13.39264 -13.23689 -12.59210 -12.45324 -12.36888 -11.91761 -11.70682 -11.41815 -11.40543 -11.25833 -11.18954 -10.96496 -10.63031 -10.56379 -9.56048 -9.39850 -9.20889 -8.87103 -8.28327 -8.06056 -6.61303 -6.51348 -4.25561 0.68135 1.10021 1.21369 2.14969 2.31728 2.93417 3.01992 3.07274 3.29583 3.49875 3.63869 3.81580 3.88053 4.01176 4.35942 4.38069 4.52617 4.80823 4.90865 4.97266 5.03950 5.30386 5.44757 5.69584 5.85119 6.00873 6.21726 6.27462 6.31554 6.52695 6.79408 6.90118 7.14280 7.47689 7.68952 7.85496 8.07361 8.20996 8.34859 8.66077 9.31167 9.61085 10.34434 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.024836 B = 0.002750 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.106893 B =10177.547262 C =11294.808615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.264 1.264 7 C -0.321 4.321 8 H 0.116 0.884 9 N -0.141 5.141 10 C -0.084 4.084 11 C -0.061 4.061 12 N -0.589 5.589 13 C 0.404 3.596 14 N -0.505 5.505 15 C 0.200 3.800 16 C -0.146 4.146 17 C 0.248 3.752 18 N -0.278 5.278 19 N -0.054 5.054 20 N -0.230 5.230 21 H 0.474 0.526 22 N -0.301 5.301 23 C -0.018 4.018 24 C -0.038 4.038 25 F -0.136 7.136 26 C -0.026 4.026 27 N -0.262 5.262 28 H 0.275 0.725 29 H 0.146 0.854 30 H 0.414 0.586 31 H 0.169 0.831 32 H 0.152 0.848 33 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.368 -14.499 -0.015 15.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.453 4.453 8 H 0.134 0.866 9 N 0.093 4.907 10 C -0.236 4.236 11 C -0.167 4.167 12 N -0.205 5.205 13 C 0.162 3.838 14 N -0.222 5.222 15 C 0.036 3.964 16 C -0.156 4.156 17 C -0.032 4.032 18 N -0.151 5.151 19 N -0.050 5.050 20 N -0.076 5.076 21 H 0.328 0.672 22 N -0.153 5.153 23 C -0.046 4.046 24 C -0.065 4.065 25 F -0.115 7.115 26 C -0.203 4.203 27 N -0.092 5.092 28 H 0.086 0.914 29 H 0.163 0.837 30 H 0.250 0.750 31 H 0.186 0.814 32 H 0.169 0.831 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -7.303 -12.558 -0.002 14.527 hybrid contribution 1.061 -0.966 -0.012 1.435 sum -6.241 -13.524 -0.013 14.895 Atomic orbital electron populations 1.70215 1.06106 1.28061 1.35029 1.25643 0.95737 1.00287 0.95453 0.85820 0.79419 0.79880 0.79014 1.19555 1.20041 1.18794 1.19895 0.91721 0.80541 1.53142 0.86598 1.44582 1.04133 1.03243 1.38789 1.21238 0.96879 0.85368 1.20085 1.17289 0.94698 0.80418 1.24321 1.41289 1.04868 1.03936 1.70368 1.18502 0.88040 0.85674 0.91585 1.67688 0.96279 1.36920 1.21308 1.22729 0.96858 0.88719 0.88060 1.17551 0.87318 0.92495 1.18235 1.23328 0.91419 0.88457 1.00006 1.76065 1.07891 1.12469 1.18712 1.78859 0.98493 1.12706 1.14899 1.47680 1.12531 1.00960 1.46448 0.67221 1.74955 1.01301 1.15827 1.23232 1.21136 0.89343 1.00860 0.93268 1.17575 0.81111 0.89757 1.18091 1.91453 1.39913 1.85038 1.95130 1.24464 0.98471 0.90418 1.06941 1.78271 0.90024 1.15191 1.25691 0.91408 0.83696 0.74991 0.81375 0.83073 0.79433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.82 11.81 55.49 0.66 -20.16 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.07 16 3 Si 0.93 18.51 29.55 -169.99 -5.02 13.48 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 7 C -0.32 -8.29 10.25 -14.82 -0.15 -8.44 16 8 H 0.12 2.69 7.83 -52.49 -0.41 2.27 16 9 N -0.14 -3.76 3.74 -11.40 -0.04 -3.80 16 10 C -0.08 -1.94 11.50 -16.37 -0.19 -2.12 16 11 C -0.06 -1.34 6.92 -83.86 -0.58 -1.92 16 12 N -0.59 -10.46 5.61 -10.04 -0.06 -10.52 16 13 C 0.40 6.75 7.46 -154.86 -1.15 5.59 16 14 N -0.50 -8.56 6.44 -12.10 -0.08 -8.63 16 15 C 0.20 2.78 10.86 -17.22 -0.19 2.59 16 16 C -0.15 -1.89 5.89 -104.73 -0.62 -2.51 16 17 C 0.25 3.08 7.95 -156.29 -1.24 1.84 16 18 N -0.28 -3.52 12.30 32.15 0.40 -3.12 16 19 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 20 N -0.23 -1.85 7.90 60.35 0.48 -1.37 16 21 H 0.47 1.46 8.96 -340.36 -3.05 -1.59 16 22 N -0.30 -3.26 12.09 32.17 0.39 -2.87 16 23 C -0.02 -0.24 9.81 -38.94 -0.38 -0.62 16 24 C -0.04 -0.54 7.34 -39.13 -0.29 -0.83 16 25 F -0.14 -1.89 16.63 2.25 0.04 -1.85 16 26 C -0.03 -0.64 10.83 -17.03 -0.18 -0.83 16 27 N -0.26 -7.27 10.39 30.81 0.32 -6.95 16 28 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.15 2.82 8.06 -52.49 -0.42 2.39 16 30 H 0.41 6.23 8.28 -40.82 -0.34 5.90 16 31 H 0.17 2.00 7.88 -52.49 -0.41 1.58 16 32 H 0.15 1.68 7.96 -52.49 -0.42 1.26 16 33 H 0.19 4.24 5.58 -52.49 -0.29 3.95 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -32.33 308.42 -7.02 -39.35 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.48 Total: 7.75 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -5.07 Total: -6.19 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 2.87 Total: -57.19 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.02 Total: 13.48 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.33 -7.02 -39.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581859708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.383 kcal (2) G-P(sol) polarization free energy of solvation -32.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 224.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 217.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds