Wall clock time and date at job start Tue Mar 31 2020 11:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47281 * 2 1 4 4 C 1.36858 * 119.99607 * 261.20587 * 3 2 1 5 5 H 1.08005 * 119.99706 * 192.79223 * 4 3 2 6 6 C 1.39015 * 120.00270 * 12.79131 * 4 3 2 7 7 N 1.31389 * 119.99997 * 24.17002 * 6 4 3 8 8 Si 1.86799 * 119.99930 * 204.16911 * 6 4 3 9 9 H 1.48505 * 109.47062 * 60.00157 * 8 6 4 10 10 H 1.48502 * 109.47150 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47168 * 299.99990 * 8 6 4 12 12 C 1.34772 * 119.99924 * 81.20787 * 3 2 1 13 13 O 1.21755 * 119.99613 * 182.35971 * 12 3 2 14 14 C 1.46443 * 120.00124 * 2.35981 * 12 3 2 15 15 S 1.76200 * 126.12906 * 352.62843 * 14 12 3 16 16 C 1.70923 * 90.40982 * 180.02562 * 15 14 12 17 17 C 1.47768 * 124.73768 * 179.97438 * 16 15 14 18 18 C 1.39607 * 120.14506 * 179.72475 * 17 16 15 19 19 C 1.37955 * 119.85029 * 179.97438 * 18 17 16 20 20 C 1.38363 * 120.14609 * 359.97438 * 19 18 17 21 21 C 1.38371 * 120.29855 * 0.02562 * 20 19 18 22 22 C 1.37943 * 120.14757 * 0.02562 * 21 20 19 23 23 N 1.30355 * 110.52021 * 359.69229 * 16 15 14 24 24 C 1.30601 * 117.31434 * 0.24125 * 23 16 15 25 25 C 1.50701 * 122.99110 * 180.02562 * 24 23 16 26 26 H 1.08993 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46768 * 300.00158 * 1 2 3 28 28 H 1.08995 * 109.46885 * 59.99724 * 1 2 3 29 29 H 1.09000 * 109.46768 * 239.99842 * 2 1 3 30 30 H 1.09002 * 109.47513 * 120.00318 * 2 1 3 31 31 H 0.97002 * 119.99729 * 179.97438 * 7 6 4 32 32 H 1.08002 * 120.07608 * 359.95726 * 18 17 16 33 33 H 1.07996 * 119.92544 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.84935 * 179.72678 * 20 19 18 35 35 H 1.08006 * 119.92250 * 179.97438 * 21 20 19 36 36 H 1.08007 * 120.07529 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47380 * 90.02765 * 25 24 23 38 38 H 1.09007 * 109.46772 * 210.02673 * 25 24 23 39 39 H 1.09002 * 109.47489 * 330.01700 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4173 1.9659 -1.1713 5 1 2.9653 2.8964 -1.1512 6 6 2.1173 1.3621 -2.3871 7 7 1.0957 0.5409 -2.4783 8 14 3.1664 1.7184 -3.8909 9 1 4.5690 1.3100 -3.6240 10 1 2.6419 0.9561 -5.0524 11 1 3.1229 3.1720 -4.1918 12 6 2.0748 2.0760 1.1535 13 8 2.4399 3.2375 1.1472 14 6 1.6970 1.4339 2.4142 15 16 0.9778 -0.1649 2.5912 16 6 0.9355 0.0287 4.2890 17 6 0.4186 -0.9786 5.2386 18 6 0.4351 -0.7219 6.6108 19 6 -0.0494 -1.6663 7.4919 20 6 -0.5514 -2.8656 7.0184 21 6 -0.5706 -3.1264 5.6596 22 6 -0.0883 -2.1911 4.7677 23 7 1.4282 1.1865 4.6293 24 6 1.8452 1.9663 3.6682 25 6 2.4370 3.3298 3.9162 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.8861 0.1199 -3.3267 32 1 0.8265 0.2139 6.9817 33 1 -0.0376 -1.4688 8.5536 34 1 -0.9254 -3.6034 7.7127 35 1 -0.9634 -4.0648 5.2966 36 1 -0.1042 -2.3958 3.7073 37 1 3.5160 3.2402 4.0421 38 1 2.2230 3.9787 3.0668 39 1 2.0000 3.7570 4.8188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049426873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:58 Heat of formation + Delta-G solvation = 50.393628 kcal Electronic energy + Delta-G solvation = -23635.698135 eV Core-core repulsion = 20249.768990 eV Total energy + Delta-G solvation = -3385.929144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.66802 -38.98940 -38.17228 -35.27349 -32.63894 -32.10720 -31.02143 -30.06315 -29.61407 -27.90376 -25.08098 -24.69526 -22.74787 -22.56870 -21.46615 -20.73937 -18.04997 -17.97928 -17.11241 -16.63845 -15.85046 -15.52633 -14.89810 -14.73180 -14.49371 -14.25287 -13.95966 -13.62649 -13.49259 -13.38894 -12.97083 -12.84947 -12.45413 -12.05246 -11.97149 -11.85042 -11.62205 -11.38090 -11.27267 -11.15690 -11.08106 -10.66537 -10.61362 -10.45180 -10.37571 -9.37422 -9.23336 -9.06793 -9.01743 -8.62695 -8.41920 -8.05412 -7.67652 -6.66472 -3.98807 0.38514 1.35132 1.58851 1.80194 2.22793 3.01417 3.11646 3.13792 3.17348 3.86891 3.90620 4.09388 4.28032 4.63772 4.86536 4.88255 4.88727 5.05569 5.22462 5.43344 5.52156 5.52843 5.70538 5.80913 5.85260 5.97856 6.19431 6.25272 6.26287 6.28487 6.37038 6.41531 6.48713 6.52380 6.54007 6.88521 6.92052 6.97606 7.19521 7.49602 7.80984 8.20381 8.25672 8.90822 9.10188 9.74093 10.32878 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.003926 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.420978 B = 7129.584218 C = 8238.195000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.417 5.417 4 C -0.294 4.294 5 H 0.112 0.888 6 C 0.032 3.968 7 N -0.850 5.850 8 Si 0.929 3.071 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.498 3.502 13 O -0.578 6.578 14 C -0.250 4.250 15 S 0.223 5.777 16 C -0.009 4.009 17 C -0.006 4.006 18 C -0.083 4.083 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.108 4.108 23 N -0.468 5.468 24 C 0.103 3.897 25 C -0.078 4.078 26 H 0.049 0.951 27 H 0.036 0.964 28 H 0.101 0.899 29 H 0.112 0.888 30 H 0.042 0.958 31 H 0.275 0.725 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 -8.879 11.094 14.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.133 5.133 4 C -0.423 4.423 5 H 0.130 0.870 6 C -0.174 4.174 7 N -0.488 5.488 8 Si 0.754 3.246 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.194 1.194 12 C 0.288 3.712 13 O -0.465 6.465 14 C -0.375 4.375 15 S 0.485 5.515 16 C -0.278 4.278 17 C -0.009 4.009 18 C -0.104 4.104 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.135 4.135 22 C -0.128 4.128 23 N -0.183 5.183 24 C -0.037 4.037 25 C -0.137 4.137 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.580 -9.144 10.764 14.570 hybrid contribution 0.651 0.679 -0.505 1.068 sum -2.929 -8.465 10.259 13.619 Atomic orbital electron populations 1.22301 0.95535 1.01088 1.02839 1.21753 0.95493 0.84028 1.00461 1.43789 1.52548 1.10577 1.06377 1.19857 1.31784 1.08851 0.81767 0.87029 1.25391 0.95779 0.96817 0.99419 1.70030 1.22299 1.29203 1.27244 0.85941 0.80152 0.79119 0.79360 1.19602 1.20671 1.19418 1.16393 0.86764 0.86267 0.81765 1.90604 1.54609 1.15988 1.85295 1.26317 1.12730 0.98384 1.00075 1.84571 1.54318 1.14659 0.97984 1.25663 1.05539 0.96166 1.00389 1.17972 0.99015 0.91853 0.92032 1.21330 0.97638 0.99610 0.91806 1.21116 0.99292 0.94002 0.99656 1.21231 0.99786 0.97225 0.95571 1.20993 1.00142 0.99200 0.93215 1.21203 0.98742 0.92904 0.99988 1.66097 1.12644 1.02881 1.36656 1.20591 0.99513 0.97932 0.85693 1.20498 0.99537 0.90328 1.03344 0.93170 0.94553 0.88017 0.86971 0.94089 0.91461 0.84944 0.85827 0.86040 0.85626 0.85755 0.91375 0.87929 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 8.44 37.16 0.31 -2.83 16 2 C 0.11 2.31 4.84 -4.04 -0.02 2.29 16 3 N -0.42 -10.35 2.64 -116.38 -0.31 -10.66 16 4 C -0.29 -7.66 9.37 -15.02 -0.14 -7.80 16 5 H 0.11 3.05 7.35 -52.48 -0.39 2.67 16 6 C 0.03 0.76 4.85 -17.45 -0.08 0.68 16 7 N -0.85 -20.01 8.75 55.50 0.49 -19.52 16 8 Si 0.93 18.93 29.62 -169.99 -5.03 13.90 16 9 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 10 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 11 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 12 C 0.50 12.49 7.49 -12.96 -0.10 12.39 16 13 O -0.58 -15.78 13.93 5.14 0.07 -15.71 16 14 C -0.25 -5.44 6.10 -36.72 -0.22 -5.66 16 15 S 0.22 3.95 14.30 -107.50 -1.54 2.41 16 16 C -0.01 -0.16 7.13 -14.28 -0.10 -0.26 16 17 C -0.01 -0.09 5.87 -104.98 -0.62 -0.70 16 18 C -0.08 -1.11 9.67 -39.17 -0.38 -1.49 16 19 C -0.12 -1.31 10.03 -39.64 -0.40 -1.71 16 20 C -0.12 -1.16 10.04 -39.49 -0.40 -1.56 16 21 C -0.12 -1.22 10.03 -39.64 -0.40 -1.62 16 22 C -0.11 -1.36 9.57 -39.18 -0.37 -1.74 16 23 N -0.47 -9.07 10.02 -8.19 -0.08 -9.15 16 24 C 0.10 2.12 6.83 -83.55 -0.57 1.55 16 25 C -0.08 -1.46 9.81 36.01 0.35 -1.10 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.71 5.87 -42.69 -0.25 0.46 16 28 H 0.10 2.29 6.28 -51.93 -0.33 1.96 16 29 H 0.11 2.50 5.96 -51.93 -0.31 2.19 16 30 H 0.04 0.82 4.57 -23.13 -0.11 0.71 16 31 H 0.27 6.09 8.31 -40.82 -0.34 5.75 16 32 H 0.13 1.82 7.79 -52.49 -0.41 1.41 16 33 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.12 1.45 7.22 -52.48 -0.38 1.07 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.10 2.12 5.91 -51.92 -0.31 1.81 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 328.53 15.07 4.95 4.95 Total: -1.00 -28.74 328.53 -8.73 -37.47 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -4.14 Total: 5.89 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.13 Total: -9.58 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.10 Total: -39.34 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.07 Total: -15.71 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.54 Total: 2.41 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.74 -8.73 -37.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.868 kcal (2) G-P(sol) polarization free energy of solvation -28.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds