Wall clock time and date at job start Tue Mar 31 2020 11:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47281 * 2 1 4 4 C 1.36858 * 119.99607 * 261.20587 * 3 2 1 5 5 H 1.08005 * 119.99706 * 192.79223 * 4 3 2 6 6 C 1.39015 * 120.00270 * 12.79131 * 4 3 2 7 7 N 1.31389 * 119.99997 * 24.17002 * 6 4 3 8 8 Si 1.86799 * 119.99930 * 204.16911 * 6 4 3 9 9 H 1.48505 * 109.47062 * 60.00157 * 8 6 4 10 10 H 1.48502 * 109.47150 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47168 * 299.99990 * 8 6 4 12 12 C 1.34772 * 119.99924 * 81.20787 * 3 2 1 13 13 O 1.21755 * 119.99613 * 182.35971 * 12 3 2 14 14 C 1.46443 * 120.00124 * 2.35981 * 12 3 2 15 15 S 1.76200 * 126.12906 * 352.62843 * 14 12 3 16 16 C 1.70923 * 90.40982 * 180.02562 * 15 14 12 17 17 C 1.47768 * 124.73768 * 179.97438 * 16 15 14 18 18 C 1.39607 * 120.14506 * 179.72475 * 17 16 15 19 19 C 1.37955 * 119.85029 * 179.97438 * 18 17 16 20 20 C 1.38363 * 120.14609 * 359.97438 * 19 18 17 21 21 C 1.38371 * 120.29855 * 0.02562 * 20 19 18 22 22 C 1.37943 * 120.14757 * 0.02562 * 21 20 19 23 23 N 1.30355 * 110.52021 * 359.69229 * 16 15 14 24 24 C 1.30601 * 117.31434 * 0.24125 * 23 16 15 25 25 C 1.50701 * 122.99110 * 180.02562 * 24 23 16 26 26 H 1.08993 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46768 * 300.00158 * 1 2 3 28 28 H 1.08995 * 109.46885 * 59.99724 * 1 2 3 29 29 H 1.09000 * 109.46768 * 239.99842 * 2 1 3 30 30 H 1.09002 * 109.47513 * 120.00318 * 2 1 3 31 31 H 0.97002 * 119.99729 * 179.97438 * 7 6 4 32 32 H 1.08002 * 120.07608 * 359.95726 * 18 17 16 33 33 H 1.07996 * 119.92544 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.84935 * 179.72678 * 20 19 18 35 35 H 1.08006 * 119.92250 * 179.97438 * 21 20 19 36 36 H 1.08007 * 120.07529 * 180.02562 * 22 21 20 37 37 H 1.08997 * 109.47380 * 90.02765 * 25 24 23 38 38 H 1.09007 * 109.46772 * 210.02673 * 25 24 23 39 39 H 1.09002 * 109.47489 * 330.01700 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4173 1.9659 -1.1713 5 1 2.9653 2.8964 -1.1512 6 6 2.1173 1.3621 -2.3871 7 7 1.0957 0.5409 -2.4783 8 14 3.1664 1.7184 -3.8909 9 1 4.5690 1.3100 -3.6240 10 1 2.6419 0.9561 -5.0524 11 1 3.1229 3.1720 -4.1918 12 6 2.0748 2.0760 1.1535 13 8 2.4399 3.2375 1.1472 14 6 1.6970 1.4339 2.4142 15 16 0.9778 -0.1649 2.5912 16 6 0.9355 0.0287 4.2890 17 6 0.4186 -0.9786 5.2386 18 6 0.4351 -0.7219 6.6108 19 6 -0.0494 -1.6663 7.4919 20 6 -0.5514 -2.8656 7.0184 21 6 -0.5706 -3.1264 5.6596 22 6 -0.0883 -2.1911 4.7677 23 7 1.4282 1.1865 4.6293 24 6 1.8452 1.9663 3.6682 25 6 2.4370 3.3298 3.9162 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.8861 0.1199 -3.3267 32 1 0.8265 0.2139 6.9817 33 1 -0.0376 -1.4688 8.5536 34 1 -0.9254 -3.6034 7.7127 35 1 -0.9634 -4.0648 5.2966 36 1 -0.1042 -2.3958 3.7073 37 1 3.5160 3.2402 4.0421 38 1 2.2230 3.9787 3.0668 39 1 2.0000 3.7570 4.8188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049426873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:57 Heat of formation + Delta-G solvation = 34.641905 kcal Electronic energy + Delta-G solvation = -23636.381181 eV Core-core repulsion = 20249.768990 eV Total energy + Delta-G solvation = -3386.612190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.16883 -40.40583 -39.52520 -37.13557 -34.18627 -33.64709 -31.92151 -31.62038 -31.04672 -29.55511 -26.78182 -26.04298 -24.32752 -23.69162 -22.60830 -22.32968 -19.61064 -19.41052 -18.95030 -17.85365 -17.42454 -16.76706 -16.42843 -16.33662 -15.82973 -15.56723 -15.50873 -15.23610 -14.95821 -14.43395 -14.30507 -14.12892 -13.95849 -13.78524 -13.35351 -13.34735 -13.26920 -12.91104 -12.83350 -12.40428 -12.25192 -12.19835 -12.16453 -12.03398 -11.97986 -11.03763 -10.67517 -10.60248 -10.38351 -10.04898 -9.90045 -9.78028 -9.06076 -8.46938 -5.93498 -0.96963 0.28735 0.42878 0.47754 0.71875 1.38655 1.43810 1.52720 1.67279 2.21486 2.28960 2.83917 2.91423 2.99667 3.02957 3.83802 3.85463 4.02223 4.10280 4.12623 4.18562 4.30339 4.53208 4.58034 4.59822 4.63222 4.70383 4.81329 4.87185 4.96809 4.98940 5.13579 5.21298 5.32598 5.38784 5.52998 5.55211 5.58226 5.76593 5.93997 6.02409 6.38714 6.71018 7.03460 7.26439 7.87965 8.51749 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021948 B = 0.003926 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.420978 B = 7129.584218 C = 8238.195000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.110 3.890 3 N -0.431 5.431 4 C -0.347 4.347 5 H 0.081 0.919 6 C 0.011 3.989 7 N -0.857 5.857 8 Si 0.989 3.011 9 H -0.271 1.271 10 H -0.264 1.264 11 H -0.277 1.277 12 C 0.490 3.510 13 O -0.618 6.618 14 C -0.307 4.307 15 S 0.271 5.729 16 C 0.017 3.983 17 C -0.049 4.049 18 C -0.092 4.092 19 C -0.123 4.123 20 C -0.101 4.101 21 C -0.116 4.116 22 C -0.110 4.110 23 N -0.490 5.490 24 C 0.110 3.890 25 C -0.075 4.075 26 H 0.084 0.916 27 H 0.034 0.966 28 H 0.074 0.926 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.282 0.718 32 H 0.121 0.879 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 -12.488 13.181 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 N -0.146 5.146 4 C -0.475 4.475 5 H 0.099 0.901 6 C -0.195 4.195 7 N -0.493 5.493 8 Si 0.812 3.188 9 H -0.196 1.196 10 H -0.188 1.188 11 H -0.202 1.202 12 C 0.280 3.720 13 O -0.508 6.508 14 C -0.431 4.431 15 S 0.535 5.465 16 C -0.252 4.252 17 C -0.052 4.052 18 C -0.113 4.113 19 C -0.141 4.141 20 C -0.120 4.120 21 C -0.134 4.134 22 C -0.131 4.131 23 N -0.205 5.205 24 C -0.030 4.030 25 C -0.134 4.134 26 H 0.103 0.897 27 H 0.052 0.948 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.169 0.831 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.064 -12.787 12.819 18.801 hybrid contribution 0.951 1.592 -0.769 2.007 sum -4.112 -11.195 12.051 16.955 Atomic orbital electron populations 1.22191 0.94361 1.02794 1.01357 1.21828 0.96369 0.82514 1.00735 1.43910 1.53070 1.11690 1.05949 1.19691 1.34749 1.09614 0.83428 0.90139 1.26016 0.96196 0.96356 1.00893 1.70078 1.22106 1.28995 1.28149 0.85065 0.78581 0.78525 0.76606 1.19578 1.18842 1.20214 1.16875 0.86091 0.86097 0.82915 1.90542 1.56101 1.17784 1.86367 1.26029 1.16567 1.01522 0.98975 1.84061 1.53214 1.11594 0.97651 1.26387 1.01884 0.95786 1.01143 1.18116 1.02298 0.92522 0.92238 1.21410 0.98103 1.00132 0.91704 1.21457 0.98266 0.93662 1.00679 1.21752 0.97106 0.97092 0.96033 1.21420 0.98962 0.99726 0.93258 1.21410 0.98315 0.92406 1.00973 1.66224 1.14588 1.03731 1.35982 1.20922 0.97976 0.98376 0.85754 1.20459 1.00182 0.89502 1.03270 0.89687 0.94759 0.90715 0.88015 0.92436 0.90738 0.86064 0.83092 0.82271 0.82368 0.85146 0.90523 0.90344 0.89664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.86 8.44 71.98 0.61 -5.25 16 2 C 0.11 4.79 4.84 86.38 0.42 5.21 16 3 N -0.43 -22.56 2.64 -640.30 -1.69 -24.26 16 4 C -0.35 -19.26 9.37 84.10 0.79 -18.48 16 5 H 0.08 4.82 7.35 -2.91 -0.02 4.80 16 6 C 0.01 0.53 4.85 84.95 0.41 0.95 16 7 N -0.86 -40.88 8.75 21.68 0.19 -40.69 16 8 Si 0.99 39.75 29.62 68.60 2.03 41.78 16 9 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 10 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 11 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 12 C 0.49 26.11 7.49 86.38 0.65 26.75 16 13 O -0.62 -36.45 13.93 -4.52 -0.06 -36.52 16 14 C -0.31 -13.81 6.10 24.12 0.15 -13.67 16 15 S 0.27 9.46 14.30 -56.49 -0.81 8.65 16 16 C 0.02 0.58 7.13 87.43 0.62 1.20 16 17 C -0.05 -1.35 5.87 -20.10 -0.12 -1.47 16 18 C -0.09 -2.26 9.67 22.53 0.22 -2.04 16 19 C -0.12 -2.11 10.03 22.23 0.22 -1.88 16 20 C -0.10 -1.40 10.04 22.33 0.22 -1.17 16 21 C -0.12 -1.81 10.03 22.23 0.22 -1.59 16 22 C -0.11 -2.42 9.57 22.53 0.22 -2.20 16 23 N -0.49 -18.95 10.02 -179.82 -1.80 -20.75 16 24 C 0.11 4.67 6.83 42.46 0.29 4.96 16 25 C -0.08 -2.92 9.81 71.24 0.70 -2.22 16 26 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 27 H 0.03 1.35 5.87 -8.26 -0.05 1.30 16 28 H 0.07 3.41 6.28 -2.39 -0.02 3.39 16 29 H 0.10 4.61 5.96 -2.39 -0.01 4.59 16 30 H 0.06 2.28 4.57 -20.70 -0.09 2.18 16 31 H 0.28 12.40 8.31 -92.71 -0.77 11.63 16 32 H 0.12 3.19 7.79 -2.91 -0.02 3.17 16 33 H 0.15 1.75 8.06 -2.91 -0.02 1.72 16 34 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.13 2.61 7.22 -2.91 -0.02 2.59 16 37 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.08 3.46 5.91 -2.38 -0.01 3.45 16 39 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -67.39 328.53 4.44 -62.95 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 0.97 Total: 19.73 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 5.62 Total: -10.90 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -3.31 Total: -85.69 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.06 Total: -36.52 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 2.03 Total: 41.78 kcal Atomic # 16 Polarization: 9.46 SS G_CDS: -0.81 Total: 8.65 kcal Total: -67.39 4.44 -62.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049426873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.587 kcal (2) G-P(sol) polarization free energy of solvation -67.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds