Wall clock time and date at job start Tue Mar 31 2020 10:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.50699 * 109.47224 * 120.00225 * 2 1 3 5 5 N 1.29374 * 124.70732 * 299.97487 * 4 2 1 6 6 C 1.30947 * 117.46511 * 179.97438 * 5 4 2 7 7 C 1.36711 * 113.93257 * 359.97438 * 6 5 4 8 8 C 1.46628 * 126.17510 * 179.97438 * 7 6 5 9 9 O 1.21697 * 120.00054 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99865 * 0.02634 * 8 7 6 11 11 C 1.39109 * 120.00066 * 174.69700 * 10 8 7 12 12 C 1.39513 * 119.83852 * 145.24290 * 11 10 8 13 13 C 1.36355 * 120.16890 * 179.76206 * 12 11 10 14 14 C 1.40880 * 119.82451 * 0.53338 * 13 12 11 15 15 C 1.41138 * 120.15841 * 179.69605 * 14 13 12 16 16 H 1.08000 * 119.99862 * 205.38178 * 15 14 13 17 17 C 1.39905 * 120.00010 * 25.38363 * 15 14 13 18 18 N 1.30875 * 119.99549 * 16.82684 * 17 15 14 19 19 Si 1.86794 * 120.00104 * 196.82141 * 17 15 14 20 20 H 1.48507 * 109.46708 * 60.00333 * 19 17 15 21 21 H 1.48504 * 109.47173 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47317 * 300.00244 * 19 17 15 23 23 C 1.40879 * 119.68323 * 359.72263 * 14 13 12 24 24 C 1.36357 * 119.83134 * 359.97438 * 23 14 13 25 25 S 1.70927 * 124.71091 * 120.26503 * 4 2 1 26 26 H 1.08990 * 109.47071 * 299.99886 * 1 2 3 27 27 H 1.09002 * 109.46812 * 60.00269 * 1 2 3 28 28 H 1.09001 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47407 * 240.00317 * 2 1 3 30 30 H 1.08997 * 109.47049 * 300.00539 * 3 2 1 31 31 H 1.09005 * 109.46658 * 59.99859 * 3 2 1 32 32 H 1.08993 * 109.47314 * 179.97438 * 3 2 1 33 33 H 1.07998 * 123.03768 * 180.02562 * 6 5 4 34 34 H 0.97004 * 120.00139 * 354.97213 * 10 8 7 35 35 H 1.08007 * 119.91356 * 359.97438 * 12 11 10 36 36 H 1.07999 * 120.08610 * 180.23558 * 13 12 11 37 37 H 0.96998 * 119.99462 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.08998 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.91854 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7770 -0.3485 2.4459 6 6 2.2873 -1.0712 3.4112 7 6 3.0342 -2.1302 2.9757 8 6 3.7252 -3.1082 3.8219 9 8 4.3624 -4.0112 3.3124 10 7 3.6545 -3.0071 5.1640 11 6 4.2161 -3.9950 5.9665 12 6 4.8022 -3.6498 7.1845 13 6 5.3504 -4.6132 7.9787 14 6 5.3338 -5.9586 7.5610 15 6 5.9049 -6.9607 8.3745 16 1 6.2660 -7.8763 7.9299 17 6 6.0031 -6.7679 9.7567 18 7 5.2903 -5.8381 10.3399 19 14 7.1515 -7.8376 10.7696 20 1 8.5444 -7.6668 10.2836 21 1 7.0729 -7.4350 12.1969 22 1 6.7508 -9.2610 10.6335 23 6 4.7449 -6.2988 6.3272 24 6 4.1952 -5.3253 5.5466 25 16 3.0245 -2.1022 1.2138 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 2.1316 -0.8512 4.4570 34 1 3.2086 -2.2476 5.5704 35 1 4.8188 -2.6172 7.5009 36 1 5.8004 -4.3450 8.9231 37 1 5.3582 -5.7047 11.2983 38 1 4.7289 -7.3281 6.0004 39 1 3.7430 -5.5846 4.6007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122742982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:13 Heat of formation + Delta-G solvation = 18.009023 kcal Electronic energy + Delta-G solvation = -22277.434378 eV Core-core repulsion = 18890.100932 eV Total energy + Delta-G solvation = -3387.333446 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24516 -39.31944 -37.25974 -35.66709 -34.53658 -33.06935 -30.45762 -29.58594 -28.65175 -27.51004 -26.25580 -24.88515 -22.83941 -21.92419 -21.13864 -20.34812 -18.92692 -18.29519 -17.40672 -17.01201 -16.30892 -15.35990 -15.23944 -15.11575 -14.58615 -14.41802 -14.23161 -13.96744 -13.78530 -13.23675 -12.96182 -12.71434 -12.45406 -12.17150 -12.01530 -11.83376 -11.71718 -11.57616 -11.49414 -11.35281 -11.13816 -11.01972 -10.58664 -10.29347 -9.95797 -9.76557 -9.54262 -9.48786 -9.27519 -9.01768 -8.78899 -7.59947 -7.05327 -6.81761 -4.34466 0.15377 1.05357 1.58195 2.34117 2.67636 3.03537 3.05302 3.07243 3.11168 3.53472 3.69474 3.79834 3.89343 4.45876 4.57712 4.64372 4.70908 4.93051 5.09891 5.18421 5.30624 5.42853 5.49531 5.57828 5.65406 5.79831 5.88082 6.00978 6.15264 6.35629 6.69153 6.86116 6.98641 7.12200 7.22251 7.47434 7.54232 7.64061 7.80605 7.98058 8.18745 8.22100 8.52350 8.63248 8.82917 8.93338 10.11993 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.047325 B = 0.002308 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.507431 B =12127.909137 C =12436.537328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.017 4.017 3 C -0.140 4.140 4 C 0.035 3.965 5 N -0.472 5.472 6 C 0.083 3.917 7 C -0.282 4.282 8 C 0.574 3.426 9 O -0.528 6.528 10 N -0.632 5.632 11 C -0.012 4.012 12 C -0.108 4.108 13 C -0.154 4.154 14 C 0.108 3.892 15 C -0.455 4.455 16 H 0.079 0.921 17 C 0.074 3.926 18 N -0.792 5.792 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.216 4.216 24 C -0.071 4.071 25 S 0.224 5.776 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.181 0.819 34 H 0.395 0.605 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.282 0.718 38 H 0.096 0.904 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 12.397 -14.717 20.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.239 4.239 5 N -0.185 5.185 6 C -0.076 4.076 7 C -0.407 4.407 8 C 0.359 3.641 9 O -0.407 6.407 10 N -0.274 5.274 11 C -0.104 4.104 12 C -0.128 4.128 13 C -0.174 4.174 14 C 0.106 3.894 15 C -0.484 4.484 16 H 0.097 0.903 17 C -0.144 4.144 18 N -0.417 5.417 19 Si 0.735 3.265 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.189 1.189 23 C -0.236 4.236 24 C -0.091 4.091 25 S 0.483 5.517 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.198 0.802 34 H 0.229 0.771 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.790 11.672 -15.607 20.638 hybrid contribution 0.077 0.127 1.856 1.862 sum -6.713 11.799 -13.751 19.323 Atomic orbital electron populations 1.21807 0.92687 1.02482 1.02905 1.19865 0.97057 0.96153 0.90858 1.21809 1.01245 0.93922 1.02909 1.27490 1.00630 0.98660 0.97142 1.65934 1.23505 1.30605 0.98487 1.22443 0.94757 0.90327 1.00028 1.26192 1.11274 1.05166 0.98021 1.16695 0.81028 0.84181 0.82204 1.90844 1.41748 1.34569 1.73492 1.42683 1.55480 1.24829 1.04399 1.17089 1.11618 0.87343 0.94394 1.20225 1.00238 0.97920 0.94432 1.20900 1.03968 0.92127 1.00371 1.17682 0.88339 0.92579 0.90844 1.19558 1.34451 1.03008 0.91412 0.90277 1.25946 0.94344 0.95374 0.98707 1.69826 1.31237 1.28525 1.12096 0.86328 0.81338 0.80695 0.78166 1.18760 1.20308 1.18938 1.20657 1.07275 0.97223 0.98484 1.20239 0.99496 0.91144 0.98250 1.84037 1.43246 1.23685 1.00718 0.91340 0.91587 0.92441 0.89227 0.91579 0.91348 0.92455 0.80209 0.77055 0.89046 0.85984 0.90721 0.88565 0.88113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 2 C -0.02 -0.13 3.35 -91.77 -0.31 -0.44 16 3 C -0.14 -0.96 9.17 37.16 0.34 -0.62 16 4 C 0.04 0.38 5.89 -13.31 -0.08 0.30 16 5 N -0.47 -5.72 10.48 -11.27 -0.12 -5.84 16 6 C 0.08 1.03 10.99 -18.48 -0.20 0.83 16 7 C -0.28 -4.10 6.52 -36.75 -0.24 -4.34 16 8 C 0.57 10.55 7.50 -12.88 -0.10 10.45 16 9 O -0.53 -11.69 14.70 5.19 0.08 -11.61 16 10 N -0.63 -11.40 5.28 -10.94 -0.06 -11.46 16 11 C -0.01 -0.27 6.27 -83.61 -0.52 -0.79 16 12 C -0.11 -2.45 9.90 -39.78 -0.39 -2.85 16 13 C -0.15 -3.91 8.63 -39.26 -0.34 -4.25 16 14 C 0.11 2.88 5.57 -106.80 -0.59 2.29 16 15 C -0.46 -11.96 9.04 -37.86 -0.34 -12.30 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 17 C 0.07 1.83 5.15 -17.34 -0.09 1.74 16 18 N -0.79 -19.95 10.95 55.55 0.61 -19.34 16 19 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 20 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 21 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.22 -5.48 9.74 -39.26 -0.38 -5.86 16 24 C -0.07 -1.72 8.57 -39.78 -0.34 -2.06 16 25 S 0.22 2.72 22.99 -107.50 -2.47 0.24 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.54 8.12 -51.93 -0.42 0.12 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.18 1.78 7.19 -52.49 -0.38 1.40 16 34 H 0.40 5.62 7.56 -40.82 -0.31 5.32 16 35 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 38 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.10 2.39 6.47 -52.49 -0.34 2.05 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -30.34 347.42 -9.71 -40.05 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.70 Total: 7.90 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -3.25 Total: -18.53 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.43 Total: -36.64 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Atomic # 16 Polarization: 2.72 SS G_CDS: -2.47 Total: 0.24 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.34 -9.71 -40.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122742982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.059 kcal (2) G-P(sol) polarization free energy of solvation -30.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds