Wall clock time and date at job start Tue Mar 31 2020 10:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 C 1.50699 * 109.47224 * 120.00225 * 2 1 3 5 5 N 1.29374 * 124.70732 * 299.97487 * 4 2 1 6 6 C 1.30947 * 117.46511 * 179.97438 * 5 4 2 7 7 C 1.36711 * 113.93257 * 359.97438 * 6 5 4 8 8 C 1.46628 * 126.17510 * 179.97438 * 7 6 5 9 9 O 1.21697 * 120.00054 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99865 * 0.02634 * 8 7 6 11 11 C 1.39109 * 120.00066 * 174.69700 * 10 8 7 12 12 C 1.39513 * 119.83852 * 145.24290 * 11 10 8 13 13 C 1.36355 * 120.16890 * 179.76206 * 12 11 10 14 14 C 1.40880 * 119.82451 * 0.53338 * 13 12 11 15 15 C 1.41138 * 120.15841 * 179.69605 * 14 13 12 16 16 H 1.08000 * 119.99862 * 205.38178 * 15 14 13 17 17 C 1.39905 * 120.00010 * 25.38363 * 15 14 13 18 18 N 1.30875 * 119.99549 * 16.82684 * 17 15 14 19 19 Si 1.86794 * 120.00104 * 196.82141 * 17 15 14 20 20 H 1.48507 * 109.46708 * 60.00333 * 19 17 15 21 21 H 1.48504 * 109.47173 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47317 * 300.00244 * 19 17 15 23 23 C 1.40879 * 119.68323 * 359.72263 * 14 13 12 24 24 C 1.36357 * 119.83134 * 359.97438 * 23 14 13 25 25 S 1.70927 * 124.71091 * 120.26503 * 4 2 1 26 26 H 1.08990 * 109.47071 * 299.99886 * 1 2 3 27 27 H 1.09002 * 109.46812 * 60.00269 * 1 2 3 28 28 H 1.09001 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47407 * 240.00317 * 2 1 3 30 30 H 1.08997 * 109.47049 * 300.00539 * 3 2 1 31 31 H 1.09005 * 109.46658 * 59.99859 * 3 2 1 32 32 H 1.08993 * 109.47314 * 179.97438 * 3 2 1 33 33 H 1.07998 * 123.03768 * 180.02562 * 6 5 4 34 34 H 0.97004 * 120.00139 * 354.97213 * 10 8 7 35 35 H 1.08007 * 119.91356 * 359.97438 * 12 11 10 36 36 H 1.07999 * 120.08610 * 180.23558 * 13 12 11 37 37 H 0.96998 * 119.99462 * 179.97438 * 18 17 15 38 38 H 1.08001 * 120.08998 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.91854 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7770 -0.3485 2.4459 6 6 2.2873 -1.0712 3.4112 7 6 3.0342 -2.1302 2.9757 8 6 3.7252 -3.1082 3.8219 9 8 4.3624 -4.0112 3.3124 10 7 3.6545 -3.0071 5.1640 11 6 4.2161 -3.9950 5.9665 12 6 4.8022 -3.6498 7.1845 13 6 5.3504 -4.6132 7.9787 14 6 5.3338 -5.9586 7.5610 15 6 5.9049 -6.9607 8.3745 16 1 6.2660 -7.8763 7.9299 17 6 6.0031 -6.7679 9.7567 18 7 5.2903 -5.8381 10.3399 19 14 7.1515 -7.8376 10.7696 20 1 8.5444 -7.6668 10.2836 21 1 7.0729 -7.4350 12.1969 22 1 6.7508 -9.2610 10.6335 23 6 4.7449 -6.2988 6.3272 24 6 4.1952 -5.3253 5.5466 25 16 3.0245 -2.1022 1.2138 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 2.1316 -0.8512 4.4570 34 1 3.2086 -2.2476 5.5704 35 1 4.8188 -2.6172 7.5009 36 1 5.8004 -4.3450 8.9231 37 1 5.3582 -5.7047 11.2983 38 1 4.7289 -7.3281 6.0004 39 1 3.7430 -5.5846 4.6007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122742982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:12 Heat of formation + Delta-G solvation = 0.584559 kcal Electronic energy + Delta-G solvation = -22278.189959 eV Core-core repulsion = 18890.100932 eV Total energy + Delta-G solvation = -3388.089028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50696 -40.60614 -39.04264 -36.38370 -36.25495 -34.82090 -31.82722 -31.43916 -30.27340 -28.03425 -27.34755 -26.53296 -24.03995 -23.31436 -22.81958 -21.83016 -20.24209 -19.32365 -19.23900 -18.30082 -17.77948 -17.04691 -16.49644 -16.11600 -15.81747 -15.68595 -15.48657 -15.23545 -14.88133 -14.74703 -14.43375 -14.03604 -13.80231 -13.65739 -13.39321 -12.96417 -12.80718 -12.74601 -12.67801 -12.63611 -12.37539 -12.13078 -11.97321 -11.91725 -11.61984 -11.38121 -11.13801 -10.67492 -10.56783 -10.52708 -9.99368 -9.51719 -8.91100 -8.65613 -6.29772 -0.87022 0.06663 0.61574 0.78504 1.11053 1.36266 1.39901 1.50456 1.55292 2.11262 2.21116 2.28331 2.72638 2.96347 3.66177 3.73062 3.74813 4.05515 4.09959 4.13627 4.36280 4.43873 4.47320 4.81826 4.83896 4.88515 4.96207 4.97704 5.06634 5.10045 5.11294 5.26524 5.35823 5.37517 5.40968 5.62354 5.83363 5.97044 6.05307 6.32259 6.50021 6.56775 6.62143 6.89803 6.93582 7.21233 8.30436 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.047325 B = 0.002308 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.507431 B =12127.909137 C =12436.537328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.137 4.137 4 C 0.060 3.940 5 N -0.488 5.488 6 C 0.109 3.891 7 C -0.323 4.323 8 C 0.580 3.420 9 O -0.572 6.572 10 N -0.627 5.627 11 C 0.002 3.998 12 C -0.105 4.105 13 C -0.172 4.172 14 C 0.078 3.922 15 C -0.494 4.494 16 H 0.074 0.926 17 C 0.036 3.964 18 N -0.819 5.819 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.264 1.264 22 H -0.261 1.261 23 C -0.235 4.235 24 C -0.083 4.083 25 S 0.224 5.776 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.205 0.795 34 H 0.416 0.584 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.291 0.709 38 H 0.095 0.905 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.126 14.476 -15.622 22.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 C -0.196 4.196 4 C -0.214 4.214 5 N -0.202 5.202 6 C -0.051 4.051 7 C -0.448 4.448 8 C 0.368 3.632 9 O -0.454 6.454 10 N -0.271 5.271 11 C -0.091 4.091 12 C -0.125 4.125 13 C -0.192 4.192 14 C 0.075 3.925 15 C -0.523 4.523 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.444 5.444 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.188 1.188 22 H -0.185 1.185 23 C -0.255 4.255 24 C -0.103 4.103 25 S 0.485 5.515 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.221 0.779 34 H 0.254 0.746 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.102 0.898 38 H 0.114 0.886 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.639 13.785 -16.527 22.837 hybrid contribution 0.182 -0.323 1.911 1.947 sum -7.457 13.462 -14.616 21.224 Atomic orbital electron populations 1.21807 0.91777 1.02461 1.03577 1.20186 0.97697 0.96598 0.89998 1.21808 1.01049 0.93164 1.03580 1.28230 0.98067 0.97145 0.97932 1.66082 1.24343 1.30872 0.98898 1.22855 0.92274 0.88646 1.01299 1.25745 1.14085 1.06122 0.98821 1.17096 0.80001 0.83933 0.82169 1.90819 1.43700 1.36591 1.74256 1.42534 1.55580 1.24652 1.04323 1.17129 1.09904 0.87646 0.94414 1.20487 0.98960 0.99087 0.94015 1.20919 1.05197 0.92379 1.00696 1.18004 0.89340 0.93552 0.91568 1.19770 1.36418 1.03319 0.92761 0.90740 1.26753 0.95324 0.96750 0.99112 1.69856 1.31972 1.29705 1.12894 0.85228 0.78742 0.78754 0.76855 1.18620 1.18831 1.18532 1.20785 1.08131 0.97723 0.98829 1.20340 0.99792 0.92053 0.98103 1.84044 1.43670 1.24467 0.99337 0.92511 0.89131 0.92821 0.87081 0.89138 0.92505 0.92767 0.77880 0.74611 0.85644 0.86924 0.89839 0.88633 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.17 71.98 0.66 -0.81 16 2 C -0.02 -0.27 3.35 -11.54 -0.04 -0.31 16 3 C -0.14 -1.45 9.17 71.98 0.66 -0.79 16 4 C 0.06 1.15 5.89 88.47 0.52 1.67 16 5 N -0.49 -10.67 10.48 -189.56 -1.99 -12.66 16 6 C 0.11 2.47 10.99 84.47 0.93 3.40 16 7 C -0.32 -9.03 6.52 24.10 0.16 -8.87 16 8 C 0.58 21.11 7.50 86.43 0.65 21.75 16 9 O -0.57 -25.73 14.70 -4.34 -0.06 -25.79 16 10 N -0.63 -21.99 5.28 -306.73 -1.62 -23.61 16 11 C 0.00 0.11 6.27 38.60 0.24 0.35 16 12 C -0.11 -4.76 9.90 22.14 0.22 -4.54 16 13 C -0.17 -8.96 8.63 22.48 0.19 -8.76 16 14 C 0.08 4.32 5.57 -21.27 -0.12 4.20 16 15 C -0.49 -26.97 9.04 23.39 0.21 -26.75 16 16 H 0.07 3.96 7.90 -2.91 -0.02 3.93 16 17 C 0.04 1.81 5.15 85.24 0.44 2.25 16 18 N -0.82 -41.87 10.95 21.82 0.24 -41.63 16 19 Si 0.98 37.95 29.59 68.60 2.03 39.98 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 C -0.23 -12.43 9.74 22.48 0.22 -12.21 16 24 C -0.08 -4.10 8.57 22.14 0.19 -3.91 16 25 S 0.22 5.15 22.99 -56.49 -1.30 3.85 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.93 8.12 -2.38 -0.02 0.91 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.20 3.40 7.19 -2.91 -0.02 3.38 16 34 H 0.42 10.96 7.56 -92.71 -0.70 10.26 16 35 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 36 H 0.11 6.00 6.18 -2.91 -0.02 5.99 16 37 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 38 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.10 4.89 6.47 -2.91 -0.02 4.87 16 Total: -1.00 -67.99 347.42 2.82 -65.17 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.39 Total: 28.04 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 5.13 Total: -33.34 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -3.37 Total: -77.90 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.06 Total: -25.79 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Atomic # 16 Polarization: 5.15 SS G_CDS: -1.30 Total: 3.85 kcal Total: -67.99 2.82 -65.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122742982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.753 kcal (2) G-P(sol) polarization free energy of solvation -67.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds