Wall clock time and date at job start Tue Mar 31 2020 10:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47038 * 2 1 4 4 C 1.50697 * 109.46987 * 120.00333 * 2 1 3 5 5 N 1.28639 * 124.71146 * 115.77971 * 4 2 1 6 6 C 1.33580 * 115.77370 * 179.97438 * 5 4 2 7 7 C 1.47135 * 123.15548 * 180.02562 * 6 5 4 8 8 O 1.21655 * 119.99650 * 185.51312 * 7 6 5 9 9 N 1.34772 * 120.00153 * 5.50685 * 7 6 5 10 10 C 1.36994 * 119.99965 * 186.55278 * 9 7 6 11 11 H 1.08003 * 120.00288 * 233.97685 * 10 9 7 12 12 C 1.38915 * 119.99842 * 53.98383 * 10 9 7 13 13 N 1.31421 * 120.00041 * 33.69539 * 12 10 9 14 14 Si 1.86800 * 120.00165 * 213.69430 * 12 10 9 15 15 H 1.48500 * 109.46932 * 94.99309 * 14 12 10 16 16 H 1.48499 * 109.47268 * 214.99573 * 14 12 10 17 17 H 1.48501 * 109.46949 * 334.99563 * 14 12 10 18 18 C 1.39701 * 120.00113 * 6.56014 * 9 7 6 19 19 C 1.38992 * 120.07890 * 76.06361 * 18 9 7 20 20 C 1.38068 * 119.91687 * 179.81258 * 19 18 9 21 21 C 1.38310 * 120.08471 * 0.44791 * 20 19 18 22 22 C 1.38314 * 120.15693 * 359.78153 * 21 20 19 23 23 C 1.38079 * 120.08234 * 0.02562 * 22 21 20 24 24 C 1.35324 * 113.68760 * 0.02562 * 6 5 4 25 25 S 1.70769 * 124.70710 * 295.77804 * 4 2 1 26 26 H 1.09003 * 109.47343 * 300.00208 * 1 2 3 27 27 H 1.09002 * 109.47418 * 59.99870 * 1 2 3 28 28 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46837 * 240.00294 * 2 1 3 30 30 H 1.09002 * 109.47122 * 300.00311 * 3 2 1 31 31 H 1.09006 * 109.47279 * 60.00241 * 3 2 1 32 32 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 33 33 H 0.97001 * 120.00566 * 184.94449 * 13 12 10 34 34 H 1.07998 * 120.03630 * 0.02562 * 19 18 9 35 35 H 1.08008 * 119.95921 * 180.21267 * 20 19 18 36 36 H 1.08000 * 119.92664 * 179.76773 * 21 20 19 37 37 H 1.08005 * 119.95806 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.03772 * 179.97438 * 23 22 21 39 39 H 1.07996 * 125.58843 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7101 -1.8038 1.2196 6 6 3.0653 -2.2788 2.4165 7 6 3.8422 -3.5158 2.5931 8 8 4.0488 -3.9500 3.7106 9 7 4.3250 -4.1678 1.5169 10 6 4.9312 -5.3867 1.6695 11 1 5.9249 -5.5484 1.2785 12 6 4.2678 -6.4149 2.3272 13 7 2.9621 -6.5245 2.2266 14 14 5.2317 -7.6417 3.3545 15 1 5.2288 -7.2083 4.7748 16 1 4.6021 -8.9821 3.2447 17 1 6.6305 -7.7099 2.8606 18 6 4.2072 -3.6006 0.2456 19 6 5.0451 -2.5579 -0.1323 20 6 4.9284 -2.0024 -1.3909 21 6 3.9731 -2.4759 -2.2719 22 6 3.1345 -3.5101 -1.8976 23 6 3.2480 -4.0733 -0.6419 24 6 2.6434 -1.5157 3.4513 25 16 1.7808 -0.1759 2.8326 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 2.4906 -7.1975 2.7421 34 1 5.7887 -2.1852 0.5565 35 1 5.5814 -1.1945 -1.6865 36 1 3.8816 -2.0369 -3.2544 37 1 2.3894 -3.8770 -2.5879 38 1 2.5925 -4.8805 -0.3503 39 1 2.8223 -1.7198 4.4966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171443086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:43 Heat of formation + Delta-G solvation = 44.859595 kcal Electronic energy + Delta-G solvation = -24686.040556 eV Core-core repulsion = 21299.871438 eV Total energy + Delta-G solvation = -3386.169118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.03911 -38.47163 -37.34050 -35.33037 -34.32616 -32.06377 -30.07400 -29.50268 -28.52775 -27.24827 -26.11961 -24.37633 -22.66836 -21.69119 -21.35618 -20.18652 -19.05033 -17.95903 -17.25015 -15.90817 -15.54353 -15.27677 -15.11517 -14.52675 -14.33223 -14.11942 -13.88946 -13.77335 -13.16113 -13.03782 -12.71202 -12.59879 -12.49024 -12.19879 -11.87588 -11.79158 -11.61324 -11.42115 -11.26153 -11.09419 -10.89517 -10.79484 -10.69482 -10.33852 -10.25422 -9.34355 -9.20627 -8.85461 -8.63856 -8.37543 -8.07925 -7.86713 -7.28769 -6.39633 -4.11227 1.02521 1.66309 2.04106 2.22003 2.28342 2.77535 3.29765 3.38653 3.43028 4.13787 4.27998 4.48134 4.61878 4.87734 4.90220 5.07128 5.10681 5.19875 5.50549 5.56898 5.60747 5.67125 5.70704 5.71349 5.75181 5.83740 5.92271 5.95424 6.16773 6.20933 6.24796 6.39091 6.41826 6.74423 6.87661 7.16907 7.28527 7.50737 7.57867 7.75581 8.01257 8.26413 8.81727 8.94926 9.38756 9.98031 10.64141 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.005911 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.216920 B = 4735.440509 C = 5845.158720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.145 4.145 4 C 0.031 3.969 5 N -0.413 5.413 6 C 0.038 3.962 7 C 0.559 3.441 8 O -0.545 6.545 9 N -0.398 5.398 10 C -0.356 4.356 11 H 0.085 0.915 12 C 0.090 3.910 13 N -0.827 5.827 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.287 1.287 17 H -0.268 1.268 18 C 0.195 3.805 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.146 4.146 22 C -0.118 4.118 23 C -0.096 4.096 24 C -0.242 4.242 25 S 0.148 5.852 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.269 0.731 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 14.603 -5.926 16.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.203 4.203 4 C -0.249 4.249 5 N -0.127 5.127 6 C -0.097 4.097 7 C 0.346 3.654 8 O -0.424 6.424 9 N -0.114 5.114 10 C -0.480 4.480 11 H 0.102 0.898 12 C -0.123 4.123 13 N -0.458 5.458 14 Si 0.729 3.271 15 H -0.197 1.197 16 H -0.214 1.214 17 H -0.192 1.192 18 C 0.104 3.896 19 C -0.144 4.144 20 C -0.134 4.134 21 C -0.165 4.165 22 C -0.136 4.136 23 C -0.115 4.115 24 C -0.384 4.384 25 S 0.404 5.596 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.992 14.750 -5.389 16.478 hybrid contribution 0.756 -1.557 0.755 1.888 sum -4.236 13.193 -4.634 14.611 Atomic orbital electron populations 1.21902 0.93621 1.02706 1.02118 1.19739 0.95695 0.95033 0.93383 1.21906 1.01834 0.94426 1.02166 1.27204 1.02166 0.96886 0.98648 1.67327 1.10488 1.09212 1.25685 1.21084 1.02501 0.99427 0.86648 1.17193 0.81722 0.81176 0.85358 1.90637 1.60492 1.67476 1.23789 1.40718 1.52370 1.17121 1.01225 1.18904 0.99074 0.86553 1.43473 0.89781 1.25338 0.94921 0.96451 0.95556 1.70123 1.09025 1.33049 1.33588 0.86343 0.80453 0.78590 0.81682 1.19698 1.21362 1.19226 1.17986 0.92541 0.91128 0.87945 1.21071 0.99295 0.97759 0.96320 1.20661 0.98900 0.99963 0.93915 1.20776 0.97915 0.98879 0.98888 1.20835 0.99491 0.97216 0.96089 1.21298 0.97203 0.99733 0.93315 1.26428 1.06358 0.99993 1.05592 1.82350 1.50693 1.24557 1.02006 0.92488 0.91555 0.91956 0.87878 0.91514 0.92484 0.92005 0.92084 0.87773 0.87574 0.87630 0.87415 0.86045 0.80226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.13 37.16 0.34 -1.14 16 2 C -0.02 -0.20 3.34 -91.77 -0.31 -0.50 16 3 C -0.15 -1.38 9.04 37.16 0.34 -1.04 16 4 C 0.03 0.49 6.00 -13.62 -0.08 0.41 16 5 N -0.41 -8.12 6.89 -8.52 -0.06 -8.18 16 6 C 0.04 0.84 6.44 -84.53 -0.54 0.30 16 7 C 0.56 14.93 7.20 -12.65 -0.09 14.84 16 8 O -0.54 -16.05 15.97 5.23 0.08 -15.97 16 9 N -0.40 -10.56 2.47 -60.20 -0.15 -10.71 16 10 C -0.36 -10.06 8.73 -14.99 -0.13 -10.19 16 11 H 0.08 2.35 8.02 -52.48 -0.42 1.93 16 12 C 0.09 2.54 4.24 -17.48 -0.07 2.46 16 13 N -0.83 -23.92 13.67 55.49 0.76 -23.17 16 14 Si 0.90 22.03 29.67 -169.99 -5.04 16.98 16 15 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 C 0.20 4.49 2.96 -83.72 -0.25 4.25 16 19 C -0.12 -2.51 8.73 -39.36 -0.34 -2.86 16 20 C -0.12 -1.94 10.04 -39.62 -0.40 -2.33 16 21 C -0.15 -2.32 10.04 -39.53 -0.40 -2.72 16 22 C -0.12 -2.08 10.04 -39.61 -0.40 -2.48 16 23 C -0.10 -2.09 9.55 -39.37 -0.38 -2.47 16 24 C -0.24 -4.54 10.62 29.69 0.32 -4.22 16 25 S 0.15 2.08 22.24 -107.50 -2.39 -0.31 16 26 H 0.06 0.53 8.05 -51.93 -0.42 0.11 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 7.80 -51.93 -0.41 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.27 7.37 8.32 -40.82 -0.34 7.03 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 37 H 0.11 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.12 2.96 8.06 -52.49 -0.42 2.54 16 39 H 0.18 3.25 8.04 -52.49 -0.42 2.82 16 LS Contribution 349.56 15.07 5.27 5.27 Total: -1.00 -32.46 349.56 -8.96 -41.41 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -5.03 Total: 2.37 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.40 Total: -7.70 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.55 Total: -42.05 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.08 Total: -15.97 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.04 Total: 16.98 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.39 Total: -0.31 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.46 -8.96 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171443086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.273 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds