Wall clock time and date at job start Tue Mar 31 2020 10:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47038 * 2 1 4 4 C 1.50697 * 109.46987 * 120.00333 * 2 1 3 5 5 N 1.28639 * 124.71146 * 115.77971 * 4 2 1 6 6 C 1.33580 * 115.77370 * 179.97438 * 5 4 2 7 7 C 1.47135 * 123.15548 * 180.02562 * 6 5 4 8 8 O 1.21655 * 119.99650 * 185.51312 * 7 6 5 9 9 N 1.34772 * 120.00153 * 5.50685 * 7 6 5 10 10 C 1.36994 * 119.99965 * 186.55278 * 9 7 6 11 11 H 1.08003 * 120.00288 * 233.97685 * 10 9 7 12 12 C 1.38915 * 119.99842 * 53.98383 * 10 9 7 13 13 N 1.31421 * 120.00041 * 33.69539 * 12 10 9 14 14 Si 1.86800 * 120.00165 * 213.69430 * 12 10 9 15 15 H 1.48500 * 109.46932 * 94.99309 * 14 12 10 16 16 H 1.48499 * 109.47268 * 214.99573 * 14 12 10 17 17 H 1.48501 * 109.46949 * 334.99563 * 14 12 10 18 18 C 1.39701 * 120.00113 * 6.56014 * 9 7 6 19 19 C 1.38992 * 120.07890 * 76.06361 * 18 9 7 20 20 C 1.38068 * 119.91687 * 179.81258 * 19 18 9 21 21 C 1.38310 * 120.08471 * 0.44791 * 20 19 18 22 22 C 1.38314 * 120.15693 * 359.78153 * 21 20 19 23 23 C 1.38079 * 120.08234 * 0.02562 * 22 21 20 24 24 C 1.35324 * 113.68760 * 0.02562 * 6 5 4 25 25 S 1.70769 * 124.70710 * 295.77804 * 4 2 1 26 26 H 1.09003 * 109.47343 * 300.00208 * 1 2 3 27 27 H 1.09002 * 109.47418 * 59.99870 * 1 2 3 28 28 H 1.09003 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46837 * 240.00294 * 2 1 3 30 30 H 1.09002 * 109.47122 * 300.00311 * 3 2 1 31 31 H 1.09006 * 109.47279 * 60.00241 * 3 2 1 32 32 H 1.09000 * 109.46968 * 179.97438 * 3 2 1 33 33 H 0.97001 * 120.00566 * 184.94449 * 13 12 10 34 34 H 1.07998 * 120.03630 * 0.02562 * 19 18 9 35 35 H 1.08008 * 119.95921 * 180.21267 * 20 19 18 36 36 H 1.08000 * 119.92664 * 179.76773 * 21 20 19 37 37 H 1.08005 * 119.95806 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.03772 * 179.97438 * 23 22 21 39 39 H 1.07996 * 125.58843 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7101 -1.8038 1.2196 6 6 3.0653 -2.2788 2.4165 7 6 3.8422 -3.5158 2.5931 8 8 4.0488 -3.9500 3.7106 9 7 4.3250 -4.1678 1.5169 10 6 4.9312 -5.3867 1.6695 11 1 5.9249 -5.5484 1.2785 12 6 4.2678 -6.4149 2.3272 13 7 2.9621 -6.5245 2.2266 14 14 5.2317 -7.6417 3.3545 15 1 5.2288 -7.2083 4.7748 16 1 4.6021 -8.9821 3.2447 17 1 6.6305 -7.7099 2.8606 18 6 4.2072 -3.6006 0.2456 19 6 5.0451 -2.5579 -0.1323 20 6 4.9284 -2.0024 -1.3909 21 6 3.9731 -2.4759 -2.2719 22 6 3.1345 -3.5101 -1.8976 23 6 3.2480 -4.0733 -0.6419 24 6 2.6434 -1.5157 3.4513 25 16 1.7808 -0.1759 2.8326 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 2.4906 -7.1975 2.7421 34 1 5.7887 -2.1852 0.5565 35 1 5.5814 -1.1945 -1.6865 36 1 3.8816 -2.0369 -3.2544 37 1 2.3894 -3.8770 -2.5879 38 1 2.5925 -4.8805 -0.3503 39 1 2.8223 -1.7198 4.4966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171443086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:42 Heat of formation + Delta-G solvation = 25.793754 kcal Electronic energy + Delta-G solvation = -24686.867313 eV Core-core repulsion = 21299.871438 eV Total energy + Delta-G solvation = -3386.995875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.65718 -39.99262 -39.05902 -36.40247 -36.19307 -34.10215 -31.57097 -30.91952 -30.18356 -27.98592 -27.91507 -25.97056 -24.21217 -23.18789 -22.84340 -21.41445 -20.76189 -19.56269 -18.95367 -17.57602 -17.05847 -16.90427 -16.59430 -16.20971 -15.88546 -15.60393 -15.39840 -15.08582 -14.68392 -14.47879 -14.13513 -14.08711 -13.77679 -13.69642 -13.34310 -13.16748 -12.96116 -12.84439 -12.79053 -12.53173 -12.29439 -12.09726 -12.07675 -11.88634 -11.79783 -10.86912 -10.74063 -10.63931 -10.53158 -9.79554 -9.65259 -9.56038 -9.03021 -8.50825 -6.28565 -0.38547 0.38187 0.64672 0.74421 0.80154 1.18749 1.32339 1.42189 1.44533 2.20030 2.55548 2.87786 3.00461 3.17916 3.22051 3.86605 4.10372 4.16332 4.23895 4.24768 4.31924 4.36254 4.45250 4.56958 4.79171 4.83513 4.90057 4.92565 4.99600 5.01824 5.17075 5.23309 5.34015 5.36670 5.38545 5.42596 5.72127 5.81017 5.94389 6.11719 6.34656 6.62305 6.78210 6.97255 7.37777 7.98203 8.52711 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015081 B = 0.005911 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.216920 B = 4735.440509 C = 5845.158720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.017 4.017 3 C -0.141 4.141 4 C 0.022 3.978 5 N -0.439 5.439 6 C 0.002 3.998 7 C 0.544 3.456 8 O -0.596 6.596 9 N -0.409 5.409 10 C -0.380 4.380 11 H 0.075 0.925 12 C 0.048 3.952 13 N -0.862 5.862 14 Si 0.961 3.039 15 H -0.287 1.287 16 H -0.270 1.270 17 H -0.253 1.253 18 C 0.167 3.833 19 C -0.135 4.135 20 C -0.101 4.101 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.120 4.120 24 C -0.262 4.262 25 S 0.264 5.736 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.041 0.959 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.092 0.908 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.135 0.865 38 H 0.078 0.922 39 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 18.145 -8.506 20.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 C -0.199 4.199 4 C -0.258 4.258 5 N -0.153 5.153 6 C -0.133 4.133 7 C 0.333 3.667 8 O -0.480 6.480 9 N -0.124 5.124 10 C -0.505 4.505 11 H 0.093 0.907 12 C -0.161 4.161 13 N -0.494 5.494 14 Si 0.784 3.216 15 H -0.213 1.213 16 H -0.195 1.195 17 H -0.176 1.176 18 C 0.077 3.923 19 C -0.154 4.154 20 C -0.119 4.119 21 C -0.142 4.142 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.404 4.404 25 S 0.522 5.478 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.163 0.837 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.097 0.903 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.786 18.313 -8.023 20.814 hybrid contribution 0.929 -2.426 1.462 2.981 sum -4.856 15.887 -6.561 17.862 Atomic orbital electron populations 1.21919 0.92025 1.02009 1.04137 1.19966 0.96833 0.96048 0.91024 1.21916 1.01369 0.92520 1.04081 1.28064 1.00495 0.95926 1.01335 1.67285 1.12302 1.10942 1.24746 1.20575 1.04787 0.99059 0.88906 1.17884 0.81541 0.82546 0.84743 1.90552 1.62592 1.69461 1.25396 1.40848 1.51990 1.16700 1.02899 1.19049 0.99157 0.87828 1.44441 0.90716 1.26127 0.95706 0.98126 0.96106 1.70185 1.10372 1.34284 1.34607 0.85467 0.80070 0.77105 0.78937 1.21329 1.19539 1.17642 1.18126 0.94527 0.93017 0.86602 1.21060 0.98912 0.97501 0.97966 1.21066 0.98975 0.99833 0.92055 1.21248 0.95618 0.96958 1.00381 1.21111 1.00121 0.97046 0.94443 1.21065 0.97438 0.99973 0.95481 1.26716 1.06480 1.01950 1.05264 1.81814 1.47085 1.19930 0.99010 0.91419 0.88661 0.94011 0.88792 0.88756 0.91487 0.92780 0.92102 0.89017 0.83667 0.82675 0.84685 0.90332 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.13 71.98 0.66 -1.72 16 2 C -0.02 -0.34 3.34 -11.54 -0.04 -0.38 16 3 C -0.14 -2.01 9.04 71.98 0.65 -1.36 16 4 C 0.02 0.65 6.00 88.58 0.53 1.18 16 5 N -0.44 -17.46 6.89 -180.87 -1.25 -18.70 16 6 C 0.00 0.08 6.44 40.54 0.26 0.34 16 7 C 0.54 31.28 7.20 86.58 0.62 31.91 16 8 O -0.60 -38.02 15.97 -4.21 -0.07 -38.08 16 9 N -0.41 -23.29 2.47 -462.60 -1.14 -24.43 16 10 C -0.38 -23.03 8.73 84.05 0.73 -22.30 16 11 H 0.08 4.49 8.02 -2.91 -0.02 4.46 16 12 C 0.05 2.89 4.24 84.92 0.36 3.25 16 13 N -0.86 -53.26 13.67 21.66 0.30 -52.97 16 14 Si 0.96 47.60 29.67 68.60 2.04 49.64 16 15 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 17 H -0.25 -11.75 7.11 99.48 0.71 -11.04 16 18 C 0.17 8.08 2.96 38.24 0.11 8.20 16 19 C -0.13 -5.47 8.73 22.41 0.20 -5.28 16 20 C -0.10 -3.06 10.04 22.25 0.22 -2.84 16 21 C -0.12 -3.42 10.04 22.30 0.22 -3.19 16 22 C -0.11 -3.66 10.04 22.25 0.22 -3.44 16 23 C -0.12 -5.44 9.55 22.41 0.21 -5.23 16 24 C -0.26 -10.04 10.62 67.15 0.71 -9.32 16 25 S 0.26 6.82 22.24 -56.49 -1.26 5.56 16 26 H 0.07 0.98 8.05 -2.39 -0.02 0.96 16 27 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 29 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.83 7.80 -2.38 -0.02 0.81 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.27 15.71 8.32 -92.71 -0.77 14.94 16 34 H 0.09 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.15 3.32 8.06 -2.91 -0.02 3.29 16 36 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 38 H 0.08 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.18 6.68 8.04 -2.91 -0.02 6.65 16 Total: -1.00 -80.01 349.56 5.36 -74.65 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.05 Total: 14.53 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 5.69 Total: -10.18 kcal Atomic # 7 Polarization: -94.01 SS G_CDS: -2.09 Total: -96.11 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.07 Total: -38.08 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.04 Total: 49.64 kcal Atomic # 16 Polarization: 6.82 SS G_CDS: -1.26 Total: 5.56 kcal Total: -80.01 5.36 -74.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171443086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.442 kcal (2) G-P(sol) polarization free energy of solvation -80.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds