Wall clock time and date at job start Tue Mar 31 2020 10:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.50696 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.33449 * 122.71720 * 124.97622 * 4 3 2 6 6 S 1.76164 * 108.06827 * 179.97438 * 5 4 3 7 7 C 1.70970 * 90.34301 * 0.02562 * 6 5 4 8 8 N 1.38897 * 124.94631 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99945 * 359.97165 * 8 7 6 10 10 O 1.21556 * 120.00276 * 0.02562 * 9 8 7 11 11 C 1.47840 * 120.00074 * 180.02562 * 9 8 7 12 12 C 1.39946 * 120.02722 * 359.72645 * 11 9 8 13 13 C 1.38316 * 120.35616 * 179.74159 * 12 11 9 14 14 C 1.37759 * 120.41413 * 0.55510 * 13 12 11 15 15 C 1.40753 * 120.04248 * 359.70488 * 14 13 12 16 16 C 1.41440 * 120.17104 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00701 * 24.43164 * 16 15 14 18 18 C 1.39939 * 119.99579 * 204.43536 * 16 15 14 19 19 N 1.30835 * 119.99926 * 17.87947 * 18 16 15 20 20 Si 1.86800 * 120.00097 * 197.87709 * 18 16 15 21 21 H 1.48504 * 109.46590 * 90.00107 * 20 18 16 22 22 H 1.48498 * 109.46998 * 209.99895 * 20 18 16 23 23 H 1.48496 * 109.47111 * 330.00275 * 20 18 16 24 24 C 1.39017 * 120.02725 * 180.02562 * 11 9 8 25 25 N 1.29647 * 110.10783 * 359.97438 * 7 6 5 26 26 H 1.09002 * 109.46947 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47130 * 300.00108 * 1 2 3 28 28 H 1.08994 * 109.46578 * 60.00116 * 1 2 3 29 29 H 1.08999 * 109.47130 * 239.99892 * 2 1 3 30 30 H 1.08999 * 109.47036 * 119.99998 * 2 1 3 31 31 H 1.09003 * 109.47044 * 59.99437 * 3 2 1 32 32 H 1.08999 * 109.47133 * 299.99938 * 3 2 1 33 33 H 1.08002 * 125.96222 * 0.02562 * 5 4 3 34 34 H 0.97005 * 119.99808 * 179.97438 * 8 7 6 35 35 H 1.07998 * 119.82014 * 0.02562 * 12 11 9 36 36 H 1.08006 * 119.79361 * 180.28123 * 13 12 11 37 37 H 1.08003 * 119.97654 * 179.72324 * 14 13 12 38 38 H 0.96998 * 119.99746 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.20575 * 359.96065 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2687 2.0860 -0.9191 6 16 5.9729 1.8312 -0.5529 7 6 5.5499 0.8813 0.8042 8 7 6.4561 0.2789 1.6673 9 6 7.7803 0.4235 1.4623 10 8 8.1815 1.0815 0.5223 11 6 8.7449 -0.2182 2.3807 12 6 8.2837 -0.9712 3.4664 13 6 9.1801 -1.5789 4.3267 14 6 10.5368 -1.4408 4.1318 15 6 11.0196 -0.6829 3.0485 16 6 12.4120 -0.5398 2.8455 17 1 13.0935 -1.2824 3.2333 18 6 12.9067 0.5642 2.1421 19 7 12.1572 1.6238 1.9767 20 14 14.6370 0.5251 1.4394 21 1 14.5986 -0.0230 0.0597 22 1 15.1903 1.9029 1.4095 23 1 15.4975 -0.3356 2.2902 24 6 10.1109 -0.0690 2.1700 25 7 4.2600 0.8061 0.9110 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.8764 2.6629 -1.7436 34 1 6.1359 -0.2460 2.4177 35 1 7.2221 -1.0821 3.6307 36 1 8.8141 -2.1617 5.1592 37 1 11.2305 -1.9148 4.8106 38 1 12.5002 2.3892 1.4895 39 1 10.4715 0.5146 1.3359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179968660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:37 Heat of formation + Delta-G solvation = 14.791977 kcal Electronic energy + Delta-G solvation = -22510.803670 eV Core-core repulsion = 19123.330723 eV Total energy + Delta-G solvation = -3387.472948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.27057 -39.31777 -37.29637 -35.32577 -34.17526 -33.75810 -30.75744 -29.73449 -29.57193 -27.02849 -25.59187 -24.59331 -22.58002 -21.65041 -21.11858 -20.78556 -19.32175 -17.93119 -17.61993 -16.59258 -16.07769 -15.47055 -15.36646 -14.95483 -14.86408 -14.63313 -14.17640 -13.96141 -13.41350 -13.24068 -12.94707 -12.92497 -12.69333 -12.38463 -12.10207 -11.79887 -11.39938 -11.30329 -11.22870 -11.07329 -10.89218 -10.76105 -10.61833 -10.51589 -10.12991 -9.86139 -9.53350 -9.40773 -9.34329 -8.97576 -8.11678 -7.77493 -7.68752 -6.93475 -4.54853 0.93297 1.38391 1.90416 2.12280 2.67089 2.90296 2.93627 3.01055 3.04421 3.06760 3.58106 3.82618 4.46534 4.55345 4.83073 4.95228 5.09132 5.30062 5.41645 5.42558 5.43032 5.61364 5.66173 5.76374 5.83886 5.91902 6.06955 6.11292 6.12907 6.22983 6.44863 6.55250 6.76264 6.83569 7.05251 7.18605 7.22795 7.53050 7.64137 7.79632 7.98334 7.99823 8.29954 8.33990 8.65860 8.67644 10.01293 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.002933 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.648210 B = 9545.014790 C =10603.933595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.040 4.040 4 C 0.093 3.907 5 C -0.336 4.336 6 S 0.238 5.762 7 C 0.260 3.740 8 N -0.625 5.625 9 C 0.564 3.436 10 O -0.506 6.506 11 C -0.127 4.127 12 C -0.219 4.219 13 C -0.093 4.093 14 C -0.206 4.206 15 C 0.097 3.903 16 C -0.455 4.455 17 H 0.084 0.916 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.913 3.087 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.261 1.261 24 C -0.084 4.084 25 N -0.522 5.522 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.423 0.577 35 H 0.092 0.908 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.287 0.713 39 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.160 0.089 -4.107 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.080 4.080 4 C -0.040 4.040 5 C -0.477 4.477 6 S 0.489 5.511 7 C -0.107 4.107 8 N -0.276 5.276 9 C 0.356 3.644 10 O -0.382 6.382 11 C -0.130 4.130 12 C -0.239 4.239 13 C -0.111 4.111 14 C -0.226 4.226 15 C 0.095 3.905 16 C -0.484 4.484 17 H 0.102 0.898 18 C -0.147 4.147 19 N -0.406 5.406 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.104 4.104 25 N -0.246 5.246 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.187 0.813 34 H 0.263 0.737 35 H 0.110 0.890 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.999 0.786 -4.823 13.887 hybrid contribution -0.433 -0.188 0.242 0.531 sum -13.432 0.598 -4.580 14.204 Atomic orbital electron populations 1.21785 0.95873 1.01599 1.01624 1.21436 0.95172 0.96071 1.02850 1.20185 0.87246 0.97971 1.02629 1.19719 0.97048 0.96115 0.91069 1.27209 0.99287 1.13040 1.08162 1.85095 1.01571 1.44416 1.20036 1.23514 0.90446 0.99557 0.97212 1.43087 1.04770 1.50705 1.29012 1.19312 0.80312 0.79598 0.85160 1.90646 1.76886 1.39704 1.30989 1.19104 0.93047 1.03743 0.97137 1.20340 0.97050 1.06913 0.99586 1.20445 0.93612 0.99105 0.97954 1.21156 0.94120 1.07737 0.99591 1.17595 0.93560 0.89996 0.89369 1.19630 0.92127 1.06403 1.30211 0.89805 1.25999 1.00378 0.94353 0.93993 1.69771 1.38044 1.03072 1.29667 0.86229 0.81313 0.78543 0.80259 1.19032 1.20123 1.18484 1.21659 0.89266 0.99780 0.99736 1.66129 1.02256 1.26658 1.29579 0.92768 0.92713 0.92893 0.92225 0.91008 0.90520 0.90548 0.81323 0.73696 0.89009 0.88495 0.88286 0.90226 0.84515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 37.16 0.37 -0.81 16 2 C -0.12 -1.18 5.84 -26.73 -0.16 -1.33 16 3 C -0.04 -0.42 5.71 -27.89 -0.16 -0.58 16 4 C 0.09 1.30 6.07 -84.20 -0.51 0.79 16 5 C -0.34 -4.48 11.05 29.06 0.32 -4.16 16 6 S 0.24 3.85 20.21 -107.50 -2.17 1.67 16 7 C 0.26 4.49 8.19 -87.43 -0.72 3.77 16 8 N -0.63 -10.98 5.35 -13.95 -0.07 -11.06 16 9 C 0.56 11.70 7.73 -12.33 -0.10 11.60 16 10 O -0.51 -11.46 13.79 5.32 0.07 -11.38 16 11 C -0.13 -2.82 5.87 -105.04 -0.62 -3.43 16 12 C -0.22 -4.35 9.55 -38.91 -0.37 -4.73 16 13 C -0.09 -1.87 10.01 -39.73 -0.40 -2.27 16 14 C -0.21 -4.62 9.78 -38.81 -0.38 -5.00 16 15 C 0.10 2.44 5.57 -106.87 -0.60 1.84 16 16 C -0.46 -11.36 9.05 -37.73 -0.34 -11.70 16 17 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 18 C 0.07 1.74 5.14 -17.34 -0.09 1.65 16 19 N -0.78 -19.68 10.95 55.55 0.61 -19.07 16 20 Si 0.91 17.98 29.60 -169.99 -5.03 12.94 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 C -0.08 -2.11 8.24 -38.44 -0.32 -2.43 16 25 N -0.52 -8.43 10.39 -11.30 -0.12 -8.55 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.65 8.03 -51.93 -0.42 0.23 16 33 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.42 6.53 6.84 -40.82 -0.28 6.25 16 35 H 0.09 1.52 6.38 -52.49 -0.33 1.18 16 36 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 37 H 0.10 2.06 8.06 -52.48 -0.42 1.64 16 38 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 39 H 0.14 3.68 5.73 -52.49 -0.30 3.38 16 LS Contribution 345.46 15.07 5.21 5.21 Total: -1.00 -27.24 345.46 -10.25 -37.49 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -4.68 Total: 9.54 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -4.06 Total: -16.79 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.42 Total: -38.68 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.07 Total: -11.38 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.94 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -2.17 Total: 1.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.24 -10.25 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179968660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.279 kcal (2) G-P(sol) polarization free energy of solvation -27.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds