Wall clock time and date at job start Tue Mar 31 2020 10:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47182 * 2 1 4 4 C 1.50696 * 109.47172 * 179.97438 * 3 2 1 5 5 C 1.33449 * 122.71720 * 124.97622 * 4 3 2 6 6 S 1.76164 * 108.06827 * 179.97438 * 5 4 3 7 7 C 1.70970 * 90.34301 * 0.02562 * 6 5 4 8 8 N 1.38897 * 124.94631 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99945 * 359.97165 * 8 7 6 10 10 O 1.21556 * 120.00276 * 0.02562 * 9 8 7 11 11 C 1.47840 * 120.00074 * 180.02562 * 9 8 7 12 12 C 1.39946 * 120.02722 * 359.72645 * 11 9 8 13 13 C 1.38316 * 120.35616 * 179.74159 * 12 11 9 14 14 C 1.37759 * 120.41413 * 0.55510 * 13 12 11 15 15 C 1.40753 * 120.04248 * 359.70488 * 14 13 12 16 16 C 1.41440 * 120.17104 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00701 * 24.43164 * 16 15 14 18 18 C 1.39939 * 119.99579 * 204.43536 * 16 15 14 19 19 N 1.30835 * 119.99926 * 17.87947 * 18 16 15 20 20 Si 1.86800 * 120.00097 * 197.87709 * 18 16 15 21 21 H 1.48504 * 109.46590 * 90.00107 * 20 18 16 22 22 H 1.48498 * 109.46998 * 209.99895 * 20 18 16 23 23 H 1.48496 * 109.47111 * 330.00275 * 20 18 16 24 24 C 1.39017 * 120.02725 * 180.02562 * 11 9 8 25 25 N 1.29647 * 110.10783 * 359.97438 * 7 6 5 26 26 H 1.09002 * 109.46947 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47130 * 300.00108 * 1 2 3 28 28 H 1.08994 * 109.46578 * 60.00116 * 1 2 3 29 29 H 1.08999 * 109.47130 * 239.99892 * 2 1 3 30 30 H 1.08999 * 109.47036 * 119.99998 * 2 1 3 31 31 H 1.09003 * 109.47044 * 59.99437 * 3 2 1 32 32 H 1.08999 * 109.47133 * 299.99938 * 3 2 1 33 33 H 1.08002 * 125.96222 * 0.02562 * 5 4 3 34 34 H 0.97005 * 119.99808 * 179.97438 * 8 7 6 35 35 H 1.07998 * 119.82014 * 0.02562 * 12 11 9 36 36 H 1.08006 * 119.79361 * 180.28123 * 13 12 11 37 37 H 1.08003 * 119.97654 * 179.72324 * 14 13 12 38 38 H 0.96998 * 119.99746 * 179.97438 * 19 18 16 39 39 H 1.07994 * 120.20575 * 359.96065 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2687 2.0860 -0.9191 6 16 5.9729 1.8312 -0.5529 7 6 5.5499 0.8813 0.8042 8 7 6.4561 0.2789 1.6673 9 6 7.7803 0.4235 1.4623 10 8 8.1815 1.0815 0.5223 11 6 8.7449 -0.2182 2.3807 12 6 8.2837 -0.9712 3.4664 13 6 9.1801 -1.5789 4.3267 14 6 10.5368 -1.4408 4.1318 15 6 11.0196 -0.6829 3.0485 16 6 12.4120 -0.5398 2.8455 17 1 13.0935 -1.2824 3.2333 18 6 12.9067 0.5642 2.1421 19 7 12.1572 1.6238 1.9767 20 14 14.6370 0.5251 1.4394 21 1 14.5986 -0.0230 0.0597 22 1 15.1903 1.9029 1.4095 23 1 15.4975 -0.3356 2.2902 24 6 10.1109 -0.0690 2.1700 25 7 4.2600 0.8061 0.9110 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.8764 2.6629 -1.7436 34 1 6.1359 -0.2460 2.4177 35 1 7.2221 -1.0821 3.6307 36 1 8.8141 -2.1617 5.1592 37 1 11.2305 -1.9148 4.8106 38 1 12.5002 2.3892 1.4895 39 1 10.4715 0.5146 1.3359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179968660.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:37 Heat of formation + Delta-G solvation = 1.220957 kcal Electronic energy + Delta-G solvation = -22511.392154 eV Core-core repulsion = 19123.330723 eV Total energy + Delta-G solvation = -3388.061431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.72059 -40.64604 -39.00275 -36.56756 -35.66328 -35.09860 -32.33984 -31.38387 -30.89870 -27.92304 -27.35208 -26.03434 -23.98130 -22.88653 -22.47229 -22.24373 -20.72548 -19.46855 -19.06256 -17.97951 -17.58969 -17.02969 -16.85733 -16.50822 -15.99859 -15.83137 -15.47162 -15.19305 -15.14398 -14.63423 -14.37770 -14.23771 -13.88530 -13.53127 -13.21241 -13.04245 -12.98579 -12.84617 -12.58192 -12.28306 -12.19301 -12.16134 -11.85738 -11.66641 -11.56508 -11.51761 -11.10899 -10.96364 -10.78030 -10.24152 -9.67896 -9.46017 -9.19987 -8.69951 -6.40966 -0.37626 0.13662 0.28334 0.94449 0.95735 1.37675 1.45133 1.51365 1.52148 1.63081 2.03044 2.18330 2.71355 3.43044 3.62819 3.73468 4.02739 4.20754 4.26629 4.35205 4.48693 4.50815 4.62185 4.77617 4.82788 4.85290 4.88877 5.01776 5.03289 5.10153 5.14102 5.26618 5.35638 5.37082 5.43509 5.49876 5.69421 5.82739 5.95941 6.03065 6.24087 6.53233 6.70891 6.76451 6.85225 6.88007 8.26854 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.002933 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.648210 B = 9545.014790 C =10603.933595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.037 4.037 4 C 0.076 3.924 5 C -0.309 4.309 6 S 0.202 5.798 7 C 0.233 3.767 8 N -0.613 5.613 9 C 0.565 3.435 10 O -0.534 6.534 11 C -0.134 4.134 12 C -0.200 4.200 13 C -0.092 4.092 14 C -0.210 4.210 15 C 0.067 3.933 16 C -0.492 4.492 17 H 0.086 0.914 18 C 0.031 3.969 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.251 1.251 24 C -0.120 4.120 25 N -0.520 5.520 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.205 0.795 34 H 0.432 0.568 35 H 0.133 0.867 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.288 0.712 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.700 -0.337 -3.946 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.077 4.077 4 C -0.056 4.056 5 C -0.448 4.448 6 S 0.452 5.548 7 C -0.134 4.134 8 N -0.263 5.263 9 C 0.356 3.644 10 O -0.411 6.411 11 C -0.137 4.137 12 C -0.219 4.219 13 C -0.110 4.110 14 C -0.229 4.229 15 C 0.064 3.936 16 C -0.521 4.521 17 H 0.104 0.896 18 C -0.184 4.184 19 N -0.447 5.447 20 Si 0.802 3.198 21 H -0.190 1.190 22 H -0.195 1.195 23 H -0.175 1.175 24 C -0.140 4.140 25 N -0.244 5.244 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.222 0.778 34 H 0.274 0.726 35 H 0.151 0.849 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.099 0.901 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.592 0.342 -4.639 16.271 hybrid contribution 0.052 -0.094 0.217 0.242 sum -15.541 0.248 -4.421 16.159 Atomic orbital electron populations 1.21744 0.93979 1.02149 1.02518 1.21396 0.96778 0.95574 1.01565 1.20335 0.84582 0.98517 1.04278 1.20358 0.98733 0.95858 0.90657 1.27536 0.96859 1.11994 1.08451 1.85234 1.04505 1.44692 1.20387 1.23588 0.90786 1.01064 0.97913 1.42693 1.03765 1.50562 1.29307 1.19064 0.81212 0.79401 0.84687 1.90641 1.77781 1.40763 1.31938 1.19327 0.92474 1.03805 0.98105 1.20841 0.99292 1.04219 0.97593 1.20914 0.92551 0.98695 0.98855 1.21462 0.95809 1.06810 0.98865 1.17940 0.94015 0.91136 0.90466 1.19876 0.92590 1.07299 1.32289 0.89598 1.26830 1.04239 0.93584 0.93780 1.69861 1.39993 1.03819 1.31024 0.85200 0.76554 0.78755 0.79272 1.19045 1.19477 1.17480 1.21465 0.90855 1.01751 0.99977 1.66164 1.01775 1.26345 1.30099 0.92473 0.92241 0.91555 0.92841 0.93017 0.89916 0.87802 0.77801 0.72629 0.84919 0.84192 0.87006 0.90096 0.87499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 71.98 0.71 -1.15 16 2 C -0.11 -2.04 5.84 30.60 0.18 -1.86 16 3 C -0.04 -0.66 5.71 29.85 0.17 -0.49 16 4 C 0.08 1.93 6.07 41.45 0.25 2.18 16 5 C -0.31 -7.45 11.05 66.73 0.74 -6.72 16 6 S 0.20 6.47 20.21 -56.49 -1.14 5.32 16 7 C 0.23 7.91 8.19 179.23 1.47 9.38 16 8 N -0.61 -21.21 5.35 -316.31 -1.69 -22.90 16 9 C 0.57 23.88 7.73 86.79 0.67 24.55 16 10 O -0.53 -25.22 13.79 -3.89 -0.05 -25.27 16 11 C -0.13 -6.02 5.87 -20.14 -0.12 -6.13 16 12 C -0.20 -7.55 9.55 22.70 0.22 -7.33 16 13 C -0.09 -3.49 10.01 22.17 0.22 -3.27 16 14 C -0.21 -9.33 9.78 22.77 0.22 -9.10 16 15 C 0.07 3.46 5.57 -21.32 -0.12 3.35 16 16 C -0.49 -25.62 9.05 23.47 0.21 -25.41 16 17 H 0.09 4.23 7.91 -2.91 -0.02 4.20 16 18 C 0.03 1.57 5.14 85.25 0.44 2.00 16 19 N -0.82 -43.85 10.95 21.83 0.24 -43.61 16 20 Si 0.98 38.15 29.60 68.60 2.03 40.18 16 21 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 24 C -0.12 -6.31 8.24 23.01 0.19 -6.12 16 25 N -0.52 -16.02 10.39 -189.66 -1.97 -17.99 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.12 8.07 -2.39 -0.02 1.10 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 33 H 0.21 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.43 12.63 6.84 -92.70 -0.63 12.00 16 35 H 0.13 3.89 6.38 -2.91 -0.02 3.87 16 36 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 39 H 0.11 6.20 5.73 -2.91 -0.02 6.19 16 Total: -1.00 -62.72 345.46 3.32 -59.40 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.45 Total: 30.98 kcal Atomic # 6 Polarization: -31.58 SS G_CDS: 5.45 Total: -26.12 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -3.42 Total: -84.50 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.05 Total: -25.27 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.14 Total: 5.32 kcal Total: -62.72 3.32 -59.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179968660.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.623 kcal (2) G-P(sol) polarization free energy of solvation -62.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds