Wall clock time and date at job start Tue Mar 31 2020 11:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21700 * 119.99774 * 0.02562 * 14 13 3 16 16 C 1.46584 * 120.00163 * 180.02562 * 14 13 3 17 17 C 1.36883 * 126.12586 * 180.02562 * 16 14 13 18 18 N 1.30629 * 114.04165 * 179.97438 * 17 16 14 19 19 C 1.30340 * 117.30355 * 359.97438 * 18 17 16 20 20 C 1.47799 * 124.75372 * 180.02562 * 19 18 17 21 21 C 1.39582 * 120.14361 * 179.70266 * 20 19 18 22 22 C 1.37962 * 119.84754 * 179.72046 * 21 20 19 23 23 C 1.38358 * 120.14480 * 0.55210 * 22 21 20 24 24 C 1.38354 * 120.29621 * 359.72038 * 23 22 21 25 25 C 1.37956 * 120.14834 * 359.97438 * 24 23 22 26 26 S 1.70927 * 110.49614 * 359.74740 * 19 18 17 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.08004 * 122.97546 * 0.02562 * 17 16 14 35 35 H 1.07999 * 120.08214 * 359.97133 * 21 20 19 36 36 H 1.08001 * 119.92396 * 180.29634 * 22 21 20 37 37 H 1.07998 * 119.85120 * 179.70354 * 23 22 21 38 38 H 1.08003 * 119.92666 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.07709 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3423 2.6318 0.4313 16 6 0.0476 3.3201 2.6194 17 6 -1.1503 3.9322 2.8727 18 7 -1.2448 4.4411 4.0721 19 6 -0.2157 4.3078 4.8609 20 6 -0.1444 4.8177 6.2463 21 6 1.0066 4.6150 7.0095 22 6 1.0687 5.0986 8.3000 23 6 -0.0109 5.7732 8.8420 24 6 -1.1568 5.9726 8.0928 25 6 -1.2298 5.4997 6.7989 26 16 1.0370 3.4540 4.0713 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -1.9470 3.9885 2.1457 35 1 1.8481 4.0843 6.5893 36 1 1.9605 4.9466 8.8900 37 1 0.0411 6.1456 9.8544 38 1 -1.9959 6.5004 8.5217 39 1 -2.1247 5.6563 6.2150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183827971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:05 Heat of formation + Delta-G solvation = 25.696294 kcal Electronic energy + Delta-G solvation = -22643.515847 eV Core-core repulsion = 19256.515746 eV Total energy + Delta-G solvation = -3387.000101 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10009 -39.27651 -38.48181 -35.14040 -32.70717 -32.39614 -31.31359 -31.10483 -29.32830 -27.11816 -25.86911 -23.46039 -22.94897 -22.51102 -21.45220 -19.59413 -19.45714 -18.67439 -17.04923 -16.87230 -15.92700 -15.68300 -15.28917 -15.08752 -15.01897 -14.60695 -14.26884 -13.96458 -13.75748 -13.71198 -13.22289 -12.96169 -12.74189 -12.13623 -11.86741 -11.59926 -11.52296 -11.39234 -11.30318 -11.00537 -10.89671 -10.37177 -10.26969 -9.94690 -9.92706 -9.69016 -9.45652 -9.30842 -9.29613 -9.10600 -8.56379 -8.38256 -7.94849 -6.17541 -4.27363 -0.10405 1.06578 1.11261 1.20359 1.57775 2.63041 3.20777 3.28836 3.31233 3.52894 3.70106 3.74608 3.97170 4.32963 4.56004 4.61207 4.77021 4.84821 5.10985 5.14152 5.22335 5.26713 5.45375 5.53247 5.69977 5.98338 6.11500 6.15321 6.21315 6.35000 6.41267 6.57760 6.60513 6.98762 7.12691 7.25328 7.33111 7.51881 7.57634 7.65731 7.82426 8.10786 8.49758 8.68031 8.93339 9.39653 10.87911 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.003032 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.853499 B = 9232.629291 C =10262.678676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.698 5.698 14 C 0.578 3.422 15 O -0.530 6.530 16 C -0.273 4.273 17 C 0.108 3.892 18 N -0.470 5.470 19 C 0.068 3.932 20 C -0.026 4.026 21 C -0.100 4.100 22 C -0.118 4.118 23 C -0.107 4.107 24 C -0.123 4.123 25 C -0.072 4.072 26 S 0.194 5.806 27 H 0.037 0.963 28 H 0.024 0.976 29 H 0.051 0.949 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.265 0.735 33 H 0.386 0.614 34 H 0.191 0.809 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 8.333 20.375 22.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.345 5.345 14 C 0.361 3.639 15 O -0.409 6.409 16 C -0.398 4.398 17 C -0.051 4.051 18 N -0.184 5.184 19 C -0.203 4.203 20 C -0.029 4.029 21 C -0.120 4.120 22 C -0.136 4.136 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.093 4.093 26 S 0.453 5.547 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.218 0.782 34 H 0.207 0.793 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.078 8.101 19.934 22.108 hybrid contribution 0.570 0.000 -0.440 0.720 sum -4.508 8.101 19.494 21.586 Atomic orbital electron populations 1.21854 0.98279 0.98252 1.01228 1.21947 0.92682 0.99559 1.02489 1.18900 0.94522 0.89297 0.80405 0.92896 1.21234 0.90468 1.39273 1.06456 0.91984 1.24879 0.98724 0.94689 0.95297 1.69894 1.35128 1.37458 1.09315 0.86387 0.84692 0.77827 0.78182 1.19689 1.20814 1.20824 1.46501 1.13756 1.55415 1.18862 1.16687 0.83339 0.79107 0.84760 1.90822 1.51490 1.60106 1.38514 1.26673 1.00034 1.12702 1.00374 1.22372 0.96461 0.93830 0.92407 1.66305 1.27117 1.21162 1.03837 1.25254 0.93907 1.02442 0.98653 1.17903 0.95720 1.00470 0.88813 1.21229 0.96647 0.99525 0.94639 1.21044 0.99100 0.98488 0.94942 1.21335 0.93335 0.97983 0.99966 1.21166 0.98432 1.00325 0.94158 1.21329 0.97911 0.95076 0.95004 1.83730 1.18094 1.48433 1.04441 0.94407 0.95645 0.93003 0.94916 0.88033 0.92512 0.78173 0.79256 0.85536 0.85251 0.85643 0.85389 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.07 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.70 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.25 11.29 55.43 0.63 -23.63 16 9 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -14.58 5.02 -56.28 -0.28 -14.86 16 14 C 0.58 11.72 6.35 -12.90 -0.08 11.63 16 15 O -0.53 -12.26 14.00 5.19 0.07 -12.19 16 16 C -0.27 -4.52 6.52 -36.71 -0.24 -4.76 16 17 C 0.11 1.67 11.15 -18.55 -0.21 1.46 16 18 N -0.47 -6.88 10.04 -12.01 -0.12 -7.00 16 19 C 0.07 0.90 7.13 -14.28 -0.10 0.80 16 20 C -0.03 -0.29 5.87 -104.98 -0.62 -0.90 16 21 C -0.10 -0.93 9.57 -39.18 -0.37 -1.30 16 22 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 23 C -0.11 -0.75 10.04 -39.49 -0.40 -1.15 16 24 C -0.12 -0.95 10.03 -39.64 -0.40 -1.35 16 25 C -0.07 -0.72 9.67 -39.18 -0.38 -1.10 16 26 S 0.19 2.54 21.12 -107.50 -2.27 0.27 16 27 H 0.04 0.82 5.64 -51.93 -0.29 0.53 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 1.21 7.84 -51.93 -0.41 0.81 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 2.68 5.95 -51.93 -0.31 2.38 16 32 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 33 H 0.39 7.14 7.72 -40.82 -0.32 6.83 16 34 H 0.19 2.73 8.06 -52.48 -0.42 2.31 16 35 H 0.13 1.04 7.22 -52.49 -0.38 0.66 16 36 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.14 16 38 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 39 H 0.14 1.37 7.79 -52.49 -0.41 0.96 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -30.04 343.22 -9.98 -40.01 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -4.58 Total: 6.88 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.57 Total: -9.91 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.22 Total: -45.49 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.07 Total: -12.19 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -2.27 Total: 0.27 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.04 -9.98 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183827971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.711 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds