Wall clock time and date at job start Tue Mar 31 2020 11:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21700 * 119.99774 * 0.02562 * 14 13 3 16 16 C 1.46584 * 120.00163 * 180.02562 * 14 13 3 17 17 C 1.36883 * 126.12586 * 180.02562 * 16 14 13 18 18 N 1.30629 * 114.04165 * 179.97438 * 17 16 14 19 19 C 1.30340 * 117.30355 * 359.97438 * 18 17 16 20 20 C 1.47799 * 124.75372 * 180.02562 * 19 18 17 21 21 C 1.39582 * 120.14361 * 179.70266 * 20 19 18 22 22 C 1.37962 * 119.84754 * 179.72046 * 21 20 19 23 23 C 1.38358 * 120.14480 * 0.55210 * 22 21 20 24 24 C 1.38354 * 120.29621 * 359.72038 * 23 22 21 25 25 C 1.37956 * 120.14834 * 359.97438 * 24 23 22 26 26 S 1.70927 * 110.49614 * 359.74740 * 19 18 17 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 1.08004 * 122.97546 * 0.02562 * 17 16 14 35 35 H 1.07999 * 120.08214 * 359.97133 * 21 20 19 36 36 H 1.08001 * 119.92396 * 180.29634 * 22 21 20 37 37 H 1.07998 * 119.85120 * 179.70354 * 23 22 21 38 38 H 1.08003 * 119.92666 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.07709 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3423 2.6318 0.4313 16 6 0.0476 3.3201 2.6194 17 6 -1.1503 3.9322 2.8727 18 7 -1.2448 4.4411 4.0721 19 6 -0.2157 4.3078 4.8609 20 6 -0.1444 4.8177 6.2463 21 6 1.0066 4.6150 7.0095 22 6 1.0687 5.0986 8.3000 23 6 -0.0109 5.7732 8.8420 24 6 -1.1568 5.9726 8.0928 25 6 -1.2298 5.4997 6.7989 26 16 1.0370 3.4540 4.0713 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -1.9470 3.9885 2.1457 35 1 1.8481 4.0843 6.5893 36 1 1.9605 4.9466 8.8900 37 1 0.0411 6.1456 9.8544 38 1 -1.9959 6.5004 8.5217 39 1 -2.1247 5.6563 6.2150 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183827971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:05 Heat of formation + Delta-G solvation = 8.050816 kcal Electronic energy + Delta-G solvation = -22644.281013 eV Core-core repulsion = 19256.515746 eV Total energy + Delta-G solvation = -3387.765266 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27793 -40.50439 -39.55887 -36.99275 -34.41456 -33.54544 -32.83506 -31.94780 -30.55107 -28.93043 -27.00328 -25.16125 -23.97926 -23.31169 -22.86015 -21.44776 -20.70012 -19.90114 -18.57412 -17.84430 -17.33409 -17.16371 -16.62380 -16.51995 -16.05821 -15.83291 -15.63369 -15.31704 -14.76855 -14.62542 -14.50449 -14.34072 -14.00713 -13.66900 -13.49667 -13.21032 -12.95272 -12.75571 -12.72079 -12.31599 -12.19506 -12.10343 -12.03813 -11.63222 -11.21238 -11.08771 -10.91200 -10.82919 -10.56349 -10.52797 -9.93456 -9.79386 -9.28452 -8.18254 -6.35928 -1.16465 0.00189 0.34929 0.44065 0.44171 1.43995 1.45298 1.49838 1.57045 2.17537 2.26517 2.48831 2.85505 2.86103 3.11612 3.73078 3.87996 3.98489 4.06466 4.15316 4.28710 4.46398 4.50104 4.53931 4.55968 4.72095 4.85279 4.95169 5.02945 5.10639 5.22394 5.39123 5.43846 5.45183 5.48339 5.55151 5.56126 5.73508 5.84078 5.97282 6.12041 6.43644 6.68959 6.78584 7.23274 7.39672 8.87529 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.020391 B = 0.003032 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.853499 B = 9232.629291 C =10262.678676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.278 3.722 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.071 0.929 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.278 1.278 12 H -0.284 1.284 13 N -0.698 5.698 14 C 0.582 3.418 15 O -0.568 6.568 16 C -0.319 4.319 17 C 0.122 3.878 18 N -0.491 5.491 19 C 0.083 3.917 20 C -0.060 4.060 21 C -0.104 4.104 22 C -0.119 4.119 23 C -0.095 4.095 24 C -0.125 4.125 25 C -0.082 4.082 26 S 0.243 5.757 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.266 0.734 33 H 0.398 0.602 34 H 0.192 0.808 35 H 0.134 0.866 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 9.186 24.173 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.175 3.825 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.203 1.203 12 H -0.210 1.210 13 N -0.346 5.346 14 C 0.367 3.633 15 O -0.451 6.451 16 C -0.444 4.444 17 C -0.038 4.038 18 N -0.205 5.205 19 C -0.187 4.187 20 C -0.064 4.064 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.114 4.114 24 C -0.142 4.142 25 C -0.104 4.104 26 S 0.504 5.496 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.209 0.791 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.170 0.830 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.807 8.957 23.770 25.686 hybrid contribution 0.122 -0.134 -1.372 1.384 sum -3.686 8.823 22.398 24.354 Atomic orbital electron populations 1.21696 0.96995 0.99354 1.00226 1.21799 0.93750 0.98877 1.01591 1.18505 0.94056 0.89325 0.80605 0.97718 1.21556 0.91082 1.39273 1.06899 0.91061 1.25753 1.03384 0.94229 0.94898 1.70040 1.37068 1.38150 1.09842 0.85317 0.78993 0.77908 0.78259 1.18380 1.20328 1.21004 1.46227 1.14552 1.55748 1.18043 1.17015 0.82413 0.78245 0.85593 1.90787 1.52379 1.61460 1.40424 1.26165 1.01920 1.15537 1.00738 1.22484 0.96084 0.92498 0.92748 1.66400 1.27949 1.22472 1.03689 1.25831 0.93291 1.00237 0.99305 1.18063 0.97417 1.02809 0.88082 1.21434 0.96094 0.99548 0.95414 1.21433 1.00350 0.97569 0.94276 1.21792 0.92351 0.96140 1.01134 1.21482 0.99720 0.99850 0.93188 1.21425 0.97407 0.95437 0.96143 1.83408 1.16602 1.47723 1.01863 0.94191 0.93325 0.95196 0.93952 0.90521 0.92466 0.76741 0.79149 0.84808 0.82472 0.82410 0.83016 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.51 71.98 0.61 -5.10 16 2 C -0.12 -5.99 5.45 30.59 0.17 -5.82 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H 0.00 0.30 7.58 -2.39 -0.02 0.28 16 5 C -0.55 -28.95 8.73 25.60 0.22 -28.73 16 6 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.91 -51.68 11.29 21.45 0.24 -51.44 16 9 Si 0.97 41.58 29.54 68.60 2.03 43.60 16 10 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.70 -29.90 5.02 -450.17 -2.26 -32.16 16 14 C 0.58 24.46 6.35 86.42 0.55 25.01 16 15 O -0.57 -27.76 14.00 -4.35 -0.06 -27.82 16 16 C -0.32 -10.75 6.52 24.13 0.16 -10.60 16 17 C 0.12 3.85 11.15 84.55 0.94 4.80 16 18 N -0.49 -14.34 10.04 -191.90 -1.93 -16.27 16 19 C 0.08 2.13 7.13 87.45 0.62 2.76 16 20 C -0.06 -1.25 5.87 -20.10 -0.12 -1.37 16 21 C -0.10 -1.66 9.57 22.53 0.22 -1.45 16 22 C -0.12 -1.31 10.03 22.23 0.22 -1.09 16 23 C -0.10 -0.92 10.04 22.33 0.22 -0.69 16 24 C -0.12 -1.54 10.03 22.23 0.22 -1.31 16 25 C -0.08 -1.52 9.67 22.53 0.22 -1.30 16 26 S 0.24 6.15 21.12 -56.49 -1.19 4.96 16 27 H 0.04 1.78 5.64 -2.39 -0.01 1.76 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.03 1.45 7.84 -2.38 -0.02 1.43 16 30 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.08 4.20 5.95 -2.39 -0.01 4.19 16 32 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.40 14.80 7.72 -92.71 -0.72 14.08 16 34 H 0.19 5.75 8.06 -2.91 -0.02 5.73 16 35 H 0.13 1.84 7.22 -2.91 -0.02 1.82 16 36 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 37 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 39 H 0.13 2.49 7.79 -2.91 -0.02 2.47 16 Total: -1.00 -67.41 343.22 2.01 -65.40 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.37 Total: 22.80 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: 4.81 Total: -9.08 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -3.94 Total: -99.86 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.06 Total: -27.82 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 6.15 SS G_CDS: -1.19 Total: 4.96 kcal Total: -67.41 2.01 -65.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183827971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.455 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds