Wall clock time and date at job start Tue Mar 31 2020 10:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.50696 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.33489 * 122.71320 * 125.01822 * 4 3 2 6 6 S 1.76176 * 108.06053 * 179.97438 * 5 4 3 7 7 C 1.70960 * 90.34398 * 359.97438 * 6 5 4 8 8 N 1.38816 * 124.94616 * 180.26062 * 7 6 5 9 9 C 1.34776 * 119.99835 * 359.69941 * 8 7 6 10 10 O 1.21602 * 119.99984 * 0.02562 * 9 8 7 11 11 C 1.47560 * 119.99861 * 179.97438 * 9 8 7 12 12 C 1.40056 * 119.90260 * 359.72775 * 11 9 8 13 13 C 1.36289 * 120.10723 * 179.75973 * 12 11 9 14 14 C 1.40913 * 119.89299 * 0.51038 * 13 12 11 15 15 C 1.41077 * 120.09980 * 179.71759 * 14 13 12 16 16 H 1.07994 * 119.99946 * 204.66589 * 15 14 13 17 17 C 1.40225 * 119.99539 * 24.67303 * 15 14 13 18 18 N 1.30640 * 120.00514 * 17.86641 * 17 15 14 19 19 Si 1.86806 * 119.99563 * 197.86549 * 17 15 14 20 20 H 1.48499 * 109.46981 * 59.99909 * 19 17 15 21 21 H 1.48492 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47195 * 300.00065 * 19 17 15 23 23 C 1.40902 * 119.79704 * 359.74152 * 14 13 12 24 24 C 1.36294 * 119.89795 * 0.02562 * 23 14 13 25 25 N 1.29672 * 110.11213 * 359.97438 * 7 6 5 26 26 H 1.09000 * 109.46928 * 59.99845 * 1 2 3 27 27 H 1.09004 * 109.46947 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47314 * 300.00030 * 1 2 3 29 29 H 1.08993 * 109.47365 * 240.00241 * 2 1 3 30 30 H 1.08999 * 109.46829 * 119.99608 * 2 1 3 31 31 H 1.09001 * 109.47087 * 59.99832 * 3 2 1 32 32 H 1.09003 * 109.47047 * 300.00271 * 3 2 1 33 33 H 1.07998 * 125.97205 * 359.97438 * 5 4 3 34 34 H 0.96999 * 120.00325 * 179.69393 * 8 7 6 35 35 H 1.08000 * 119.94488 * 359.97438 * 12 11 9 36 36 H 1.07997 * 120.05706 * 180.23508 * 13 12 11 37 37 H 0.97004 * 120.00292 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.05106 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.95096 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2688 2.0869 -0.9190 6 16 5.9731 1.8318 -0.5528 7 6 5.5500 0.8823 0.8044 8 7 6.4557 0.2839 1.6697 9 6 7.7799 0.4278 1.4642 10 8 8.1812 1.0821 0.5211 11 6 8.7426 -0.2078 2.3843 12 6 8.2780 -0.9553 3.4738 13 6 9.1635 -1.5482 4.3234 14 6 10.5484 -1.3992 4.1105 15 6 11.4689 -2.0061 4.9907 16 1 12.4648 -1.6015 5.0937 17 6 11.0905 -3.1348 5.7318 18 7 10.0455 -3.8318 5.3728 19 14 12.0808 -3.6418 7.2324 20 1 12.0711 -2.5395 8.2274 21 1 11.4783 -4.8577 7.8355 22 1 13.4800 -3.9309 6.8275 23 6 11.0111 -0.6419 3.0162 24 6 10.1182 -0.0565 2.1690 25 7 4.2599 0.8073 0.9114 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.8766 2.6638 -1.7434 34 1 6.1355 -0.2377 2.4222 35 1 7.2163 -1.0650 3.6388 36 1 8.8043 -2.1276 5.1611 37 1 9.7840 -4.6128 5.8852 38 1 12.0717 -0.5246 2.8494 39 1 10.4719 0.5245 1.3302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271032516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:41 Heat of formation + Delta-G solvation = 9.933353 kcal Electronic energy + Delta-G solvation = -22266.956039 eV Core-core repulsion = 18879.272406 eV Total energy + Delta-G solvation = -3387.683634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.15201 -39.21024 -37.39156 -35.24248 -34.11365 -33.95040 -30.72155 -29.73252 -29.61409 -26.99849 -26.38299 -24.08423 -22.28626 -21.61915 -21.11098 -20.73508 -19.37674 -17.75069 -17.63600 -16.86435 -16.26949 -15.61037 -15.37217 -14.90868 -14.78071 -14.32589 -14.17043 -13.87812 -13.44126 -13.19650 -12.95947 -12.88326 -12.36506 -12.26938 -12.19253 -12.01815 -11.59940 -11.38766 -11.35688 -11.15200 -10.97943 -10.81271 -10.69461 -10.44211 -10.20129 -9.72363 -9.52013 -9.47267 -9.31648 -8.92616 -8.05029 -7.88488 -7.69408 -7.20716 -4.78047 0.99931 1.44298 1.96590 2.17845 2.78236 2.85782 2.88111 2.89431 2.99833 3.07879 3.60105 3.64290 4.36073 4.61400 4.86478 4.98413 5.13285 5.38537 5.43429 5.44805 5.60863 5.64832 5.69282 5.80358 5.87325 5.88825 6.13089 6.13592 6.18142 6.26887 6.54674 6.61280 6.65622 6.82577 6.92947 7.20963 7.30878 7.52949 7.68612 7.71326 7.88817 8.06859 8.21815 8.44554 8.48691 8.56759 9.70309 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.002640 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.009111 B =10602.535177 C =11795.864497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.040 4.040 4 C 0.095 3.905 5 C -0.341 4.341 6 S 0.232 5.768 7 C 0.266 3.734 8 N -0.629 5.629 9 C 0.567 3.433 10 O -0.539 6.539 11 C -0.290 4.290 12 C -0.060 4.060 13 C -0.176 4.176 14 C 0.130 3.870 15 C -0.430 4.430 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.762 5.762 19 Si 0.917 3.083 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.261 1.261 23 C -0.238 4.238 24 C -0.012 4.012 25 N -0.526 5.526 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.168 0.832 34 H 0.421 0.579 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.291 0.709 38 H 0.102 0.898 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.004 4.893 -5.273 13.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.080 4.080 4 C -0.038 4.038 5 C -0.482 4.482 6 S 0.482 5.518 7 C -0.101 4.101 8 N -0.279 5.279 9 C 0.365 3.635 10 O -0.420 6.420 11 C -0.295 4.295 12 C -0.079 4.079 13 C -0.195 4.195 14 C 0.126 3.874 15 C -0.457 4.457 16 H 0.106 0.894 17 C -0.151 4.151 18 N -0.384 5.384 19 Si 0.740 3.260 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.185 1.185 23 C -0.257 4.257 24 C -0.032 4.032 25 N -0.251 5.251 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.185 0.815 34 H 0.260 0.740 35 H 0.109 0.891 36 H 0.140 0.860 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.010 5.082 -5.821 12.646 hybrid contribution -0.814 -0.733 1.107 1.558 sum -10.824 4.349 -4.714 12.582 Atomic orbital electron populations 1.21785 0.95894 1.01599 1.01587 1.21436 0.95149 0.96085 1.02878 1.20181 0.87346 0.97949 1.02548 1.19717 0.97008 0.96009 0.91060 1.27191 0.99403 1.13341 1.08253 1.84968 1.01575 1.44770 1.20443 1.23521 0.90394 0.99199 0.97030 1.43091 1.04942 1.51155 1.28672 1.19000 0.79978 0.79484 0.85058 1.90579 1.76878 1.42375 1.32128 1.18484 0.92230 1.15891 1.02859 1.20475 0.97323 0.95860 0.94233 1.20979 0.92939 1.04103 1.01471 1.17836 0.92629 0.87814 0.89094 1.19929 0.99893 1.08325 1.17535 0.89360 1.26177 0.95102 0.95553 0.98245 1.69719 1.21613 1.12310 1.34798 0.86195 0.80506 0.78834 0.80461 1.18299 1.19883 1.18480 1.20712 0.97799 1.08699 0.98533 1.20342 0.91334 0.94774 0.96732 1.66147 1.02323 1.26894 1.29713 0.92919 0.92766 0.92724 0.92235 0.90982 0.90569 0.90611 0.81479 0.73955 0.89147 0.85959 0.89796 0.88019 0.87737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.24 5.84 -26.73 -0.16 -1.39 16 3 C -0.04 -0.43 5.71 -27.88 -0.16 -0.59 16 4 C 0.09 1.35 6.07 -84.20 -0.51 0.84 16 5 C -0.34 -4.59 11.05 29.07 0.32 -4.27 16 6 S 0.23 3.71 20.21 -107.50 -2.17 1.53 16 7 C 0.27 4.66 8.18 -87.49 -0.72 3.94 16 8 N -0.63 -11.26 5.35 -14.04 -0.08 -11.34 16 9 C 0.57 11.49 7.72 -12.46 -0.10 11.39 16 10 O -0.54 -11.57 13.78 5.28 0.07 -11.50 16 11 C -0.29 -6.23 5.89 -104.73 -0.62 -6.85 16 12 C -0.06 -1.26 9.47 -39.60 -0.38 -1.63 16 13 C -0.18 -4.08 8.63 -39.27 -0.34 -4.42 16 14 C 0.13 3.12 5.58 -106.80 -0.60 2.52 16 15 C -0.43 -10.07 9.04 -37.76 -0.34 -10.41 16 16 H 0.09 1.95 7.91 -52.49 -0.42 1.54 16 17 C 0.07 1.59 5.13 -17.31 -0.09 1.50 16 18 N -0.76 -17.33 10.95 55.56 0.61 -16.72 16 19 Si 0.92 16.33 29.60 -169.99 -5.03 11.30 16 20 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 21 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.26 -4.61 7.11 56.52 0.40 -4.20 16 23 C -0.24 -5.39 9.73 -39.27 -0.38 -5.77 16 24 C -0.01 -0.27 9.52 -39.60 -0.38 -0.65 16 25 N -0.53 -8.74 10.39 -11.31 -0.12 -8.85 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 33 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.42 6.83 6.82 -40.82 -0.28 6.55 16 35 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 36 H 0.12 2.88 6.16 -52.49 -0.32 2.56 16 37 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 38 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.10 2.18 7.63 -52.49 -0.40 1.78 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -25.93 345.19 -10.26 -36.19 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -4.68 Total: 10.85 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: -4.07 Total: -16.66 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.42 Total: -36.92 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.30 kcal Atomic # 16 Polarization: 3.71 SS G_CDS: -2.17 Total: 1.53 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -25.93 -10.26 -36.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271032516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.127 kcal (2) G-P(sol) polarization free energy of solvation -25.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds