Wall clock time and date at job start Tue Mar 31 2020 10:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47048 * 2 1 4 4 C 1.50696 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.33489 * 122.71320 * 125.01822 * 4 3 2 6 6 S 1.76176 * 108.06053 * 179.97438 * 5 4 3 7 7 C 1.70960 * 90.34398 * 359.97438 * 6 5 4 8 8 N 1.38816 * 124.94616 * 180.26062 * 7 6 5 9 9 C 1.34776 * 119.99835 * 359.69941 * 8 7 6 10 10 O 1.21602 * 119.99984 * 0.02562 * 9 8 7 11 11 C 1.47560 * 119.99861 * 179.97438 * 9 8 7 12 12 C 1.40056 * 119.90260 * 359.72775 * 11 9 8 13 13 C 1.36289 * 120.10723 * 179.75973 * 12 11 9 14 14 C 1.40913 * 119.89299 * 0.51038 * 13 12 11 15 15 C 1.41077 * 120.09980 * 179.71759 * 14 13 12 16 16 H 1.07994 * 119.99946 * 204.66589 * 15 14 13 17 17 C 1.40225 * 119.99539 * 24.67303 * 15 14 13 18 18 N 1.30640 * 120.00514 * 17.86641 * 17 15 14 19 19 Si 1.86806 * 119.99563 * 197.86549 * 17 15 14 20 20 H 1.48499 * 109.46981 * 59.99909 * 19 17 15 21 21 H 1.48492 * 109.47234 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47195 * 300.00065 * 19 17 15 23 23 C 1.40902 * 119.79704 * 359.74152 * 14 13 12 24 24 C 1.36294 * 119.89795 * 0.02562 * 23 14 13 25 25 N 1.29672 * 110.11213 * 359.97438 * 7 6 5 26 26 H 1.09000 * 109.46928 * 59.99845 * 1 2 3 27 27 H 1.09004 * 109.46947 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47314 * 300.00030 * 1 2 3 29 29 H 1.08993 * 109.47365 * 240.00241 * 2 1 3 30 30 H 1.08999 * 109.46829 * 119.99608 * 2 1 3 31 31 H 1.09001 * 109.47087 * 59.99832 * 3 2 1 32 32 H 1.09003 * 109.47047 * 300.00271 * 3 2 1 33 33 H 1.07998 * 125.97205 * 359.97438 * 5 4 3 34 34 H 0.96999 * 120.00325 * 179.69393 * 8 7 6 35 35 H 1.08000 * 119.94488 * 359.97438 * 12 11 9 36 36 H 1.07997 * 120.05706 * 180.23508 * 13 12 11 37 37 H 0.97004 * 120.00292 * 179.97438 * 18 17 15 38 38 H 1.07998 * 120.05106 * 179.97438 * 23 14 13 39 39 H 1.08001 * 119.95096 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.2688 2.0869 -0.9190 6 16 5.9731 1.8318 -0.5528 7 6 5.5500 0.8823 0.8044 8 7 6.4557 0.2839 1.6697 9 6 7.7799 0.4278 1.4642 10 8 8.1812 1.0821 0.5211 11 6 8.7426 -0.2078 2.3843 12 6 8.2780 -0.9553 3.4738 13 6 9.1635 -1.5482 4.3234 14 6 10.5484 -1.3992 4.1105 15 6 11.4689 -2.0061 4.9907 16 1 12.4648 -1.6015 5.0937 17 6 11.0905 -3.1348 5.7318 18 7 10.0455 -3.8318 5.3728 19 14 12.0808 -3.6418 7.2324 20 1 12.0711 -2.5395 8.2274 21 1 11.4783 -4.8577 7.8355 22 1 13.4800 -3.9309 6.8275 23 6 11.0111 -0.6419 3.0162 24 6 10.1182 -0.0565 2.1690 25 7 4.2599 0.8073 0.9114 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.8766 2.6638 -1.7434 34 1 6.1355 -0.2377 2.4222 35 1 7.2163 -1.0650 3.6388 36 1 8.8043 -2.1276 5.1611 37 1 9.7840 -4.6128 5.8852 38 1 12.0717 -0.5246 2.8494 39 1 10.4719 0.5245 1.3302 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271032516.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:40 Heat of formation + Delta-G solvation = -1.745306 kcal Electronic energy + Delta-G solvation = -22267.462464 eV Core-core repulsion = 18879.272406 eV Total energy + Delta-G solvation = -3388.190058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57298 -40.56385 -39.07747 -36.44778 -35.77160 -35.09828 -32.30182 -31.38058 -30.93727 -28.05924 -27.88680 -25.46695 -23.74525 -22.88465 -22.47485 -22.21088 -20.71929 -19.42376 -19.02071 -18.30082 -17.59438 -17.21301 -16.73948 -16.21695 -15.82400 -15.79368 -15.46960 -15.15564 -15.11214 -14.58164 -14.27025 -13.94827 -13.86717 -13.78447 -13.34846 -13.14552 -12.99914 -12.88483 -12.68919 -12.43456 -12.16977 -12.03571 -11.81544 -11.67807 -11.52315 -11.42060 -11.16553 -10.85604 -10.72449 -10.18385 -9.67162 -9.56337 -9.14563 -8.85686 -6.54614 -0.29140 0.19470 0.35330 0.99879 1.12129 1.36233 1.41263 1.51866 1.68680 1.70219 2.08218 2.14642 2.68939 3.49809 3.62115 4.00065 4.04240 4.19654 4.22623 4.29200 4.40065 4.52068 4.64206 4.82772 4.85518 4.89291 4.91288 4.97030 5.01248 5.09439 5.17126 5.21433 5.35246 5.39142 5.48838 5.51737 5.69357 5.80574 5.93805 6.11402 6.15698 6.47617 6.70100 6.80027 6.81849 6.93015 8.08363 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.021191 B = 0.002640 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.009111 B =10602.535177 C =11795.864497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.037 4.037 4 C 0.075 3.925 5 C -0.314 4.314 6 S 0.213 5.787 7 C 0.235 3.765 8 N -0.624 5.624 9 C 0.572 3.428 10 O -0.554 6.554 11 C -0.296 4.296 12 C -0.053 4.053 13 C -0.197 4.197 14 C 0.103 3.897 15 C -0.460 4.460 16 H 0.092 0.908 17 C 0.037 3.963 18 N -0.791 5.791 19 Si 0.988 3.012 20 H -0.257 1.257 21 H -0.265 1.265 22 H -0.257 1.257 23 C -0.250 4.250 24 C -0.020 4.020 25 N -0.530 5.530 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.204 0.796 34 H 0.426 0.574 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.299 0.701 38 H 0.111 0.889 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 5.439 -5.734 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.077 4.077 4 C -0.057 4.057 5 C -0.454 4.454 6 S 0.463 5.537 7 C -0.132 4.132 8 N -0.273 5.273 9 C 0.369 3.631 10 O -0.436 6.436 11 C -0.301 4.301 12 C -0.072 4.072 13 C -0.216 4.216 14 C 0.100 3.900 15 C -0.486 4.486 16 H 0.110 0.890 17 C -0.184 4.184 18 N -0.414 5.414 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.181 1.181 23 C -0.270 4.270 24 C -0.039 4.039 25 N -0.255 5.255 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.221 0.779 34 H 0.266 0.734 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.111 0.889 38 H 0.129 0.871 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.751 5.633 -6.297 14.473 hybrid contribution -0.455 -0.819 1.094 1.440 sum -12.206 4.814 -5.203 14.115 Atomic orbital electron populations 1.21743 0.93949 1.02112 1.02550 1.21394 0.96809 0.95727 1.01434 1.20320 0.84847 0.98328 1.04196 1.20330 0.98659 0.95950 0.90782 1.27544 0.97290 1.12148 1.08431 1.84975 1.04041 1.44519 1.20121 1.23647 0.90732 1.00854 0.97945 1.42784 1.04329 1.51175 1.28999 1.18709 0.80642 0.79217 0.84575 1.90574 1.77598 1.42864 1.32522 1.18701 0.92553 1.15674 1.03122 1.20702 0.98567 0.94621 0.93343 1.21001 0.93194 1.05297 1.02136 1.18182 0.93375 0.88612 0.89859 1.20203 1.00237 1.09403 1.18786 0.89045 1.26986 0.96018 0.94911 1.00446 1.69747 1.22814 1.12856 1.35940 0.85134 0.78961 0.78565 0.76557 1.18158 1.18906 1.18054 1.20871 0.98500 1.09003 0.98584 1.20509 0.91747 0.94807 0.96862 1.66169 1.02121 1.26749 1.30451 0.91405 0.92564 0.92278 0.92854 0.93311 0.90080 0.87729 0.77863 0.73363 0.86381 0.86764 0.88930 0.87142 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 71.98 0.71 -1.32 16 2 C -0.12 -2.21 5.84 30.60 0.18 -2.03 16 3 C -0.04 -0.69 5.71 29.85 0.17 -0.52 16 4 C 0.07 1.95 6.07 41.46 0.25 2.20 16 5 C -0.31 -7.53 11.05 66.74 0.74 -6.79 16 6 S 0.21 6.57 20.21 -56.49 -1.14 5.43 16 7 C 0.23 8.07 8.18 179.25 1.47 9.54 16 8 N -0.62 -22.18 5.35 -316.59 -1.69 -23.87 16 9 C 0.57 23.20 7.72 86.70 0.67 23.87 16 10 O -0.55 -23.80 13.78 -4.04 -0.06 -23.86 16 11 C -0.30 -12.83 5.89 -19.94 -0.12 -12.95 16 12 C -0.05 -2.27 9.47 22.26 0.21 -2.06 16 13 C -0.20 -9.39 8.63 22.47 0.19 -9.20 16 14 C 0.10 5.11 5.58 -21.28 -0.12 4.99 16 15 C -0.46 -22.04 9.04 23.45 0.21 -21.83 16 16 H 0.09 4.15 7.91 -2.91 -0.02 4.12 16 17 C 0.04 1.63 5.13 85.35 0.44 2.07 16 18 N -0.79 -36.45 10.95 21.87 0.24 -36.21 16 19 Si 0.99 33.20 29.60 68.60 2.03 35.23 16 20 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 21 H -0.26 -8.42 7.11 99.48 0.71 -7.71 16 22 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 23 C -0.25 -11.64 9.73 22.47 0.22 -11.42 16 24 C -0.02 -0.89 9.52 22.26 0.21 -0.68 16 25 N -0.53 -17.01 10.39 -189.71 -1.97 -18.98 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 1.15 8.08 -2.39 -0.02 1.13 16 31 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.10 1.36 8.03 -2.39 -0.02 1.34 16 33 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.43 13.72 6.82 -92.71 -0.63 13.09 16 35 H 0.12 4.23 6.37 -2.91 -0.02 4.21 16 36 H 0.11 5.55 6.16 -2.91 -0.02 5.53 16 37 H 0.30 12.29 8.29 -92.71 -0.77 11.52 16 38 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.11 4.76 7.63 -2.91 -0.02 4.73 16 Total: -1.00 -56.49 345.19 3.30 -53.19 By element: Atomic # 1 Polarization: 34.75 SS G_CDS: 0.46 Total: 35.20 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: 5.44 Total: -26.13 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -3.42 Total: -79.06 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 14 Polarization: 33.20 SS G_CDS: 2.03 Total: 35.23 kcal Atomic # 16 Polarization: 6.57 SS G_CDS: -1.14 Total: 5.43 kcal Total: -56.49 3.30 -53.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271032516.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.442 kcal (2) G-P(sol) polarization free energy of solvation -56.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds