Wall clock time and date at job start Tue Mar 31 2020 11:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50699 * 120.00372 * 2 1 4 4 N 1.46507 * 109.47170 * 125.00601 * 3 2 1 5 5 C 1.46500 * 119.99750 * 262.22923 * 4 3 2 6 6 C 1.50700 * 109.47215 * 270.00280 * 5 4 3 7 7 H 1.07999 * 119.99989 * 359.97438 * 6 5 4 8 8 C 1.37880 * 120.00016 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00061 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00088 * 179.97438 * 8 6 5 11 11 H 1.48491 * 109.47387 * 59.99430 * 10 8 6 12 12 H 1.48500 * 109.47487 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.46668 * 299.99655 * 10 8 6 14 14 C 1.34770 * 120.00269 * 82.23115 * 4 3 2 15 15 O 1.21760 * 120.00029 * 182.50335 * 14 4 3 16 16 C 1.46116 * 119.99743 * 2.50025 * 14 4 3 17 17 S 1.75808 * 125.48021 * 350.87572 * 16 14 4 18 18 C 1.70565 * 91.67603 * 180.02562 * 17 16 14 19 19 C 1.33576 * 111.17627 * 359.75354 * 18 17 16 20 20 C 1.37352 * 125.47398 * 170.90888 * 16 14 4 21 21 N 1.39883 * 123.48968 * 359.94997 * 20 16 14 22 22 C 1.36601 * 125.67363 * 309.69743 * 21 20 16 23 23 C 1.34832 * 108.19950 * 179.83129 * 22 21 20 24 24 C 1.40967 * 107.47267 * 0.42596 * 23 22 21 25 25 C 1.34837 * 107.47346 * 359.73372 * 24 23 22 26 26 H 1.07999 * 120.00100 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00205 * 180.02562 * 1 2 3 28 28 H 1.08003 * 120.00437 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47350 * 5.00649 * 3 2 1 30 30 H 1.09002 * 109.47251 * 245.00429 * 3 2 1 31 31 H 1.09009 * 109.47225 * 30.00035 * 5 4 3 32 32 H 1.08995 * 109.47200 * 149.99569 * 5 4 3 33 33 H 0.96993 * 119.99995 * 179.97438 * 9 8 6 34 34 H 1.08007 * 124.41380 * 179.97438 * 18 17 16 35 35 H 1.07996 * 122.46514 * 180.23467 * 19 18 17 36 36 H 1.08001 * 125.89477 * 359.96112 * 22 21 20 37 37 H 1.07998 * 126.26456 * 180.19890 * 23 22 21 38 38 H 1.08005 * 126.26036 * 179.70303 * 24 23 22 39 39 H 1.07999 * 125.90012 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9939 1.3317 1.1314 5 6 2.6198 2.0164 2.3713 6 6 3.0584 3.4566 2.3019 7 1 3.5654 3.8248 1.4223 8 6 2.8132 4.3037 3.3618 9 7 2.1962 3.8551 4.4331 10 14 3.3573 6.0886 3.2760 11 1 2.6954 6.7532 2.1249 12 1 2.9792 6.7824 4.5333 13 1 4.8310 6.1489 3.1020 14 6 4.1939 0.7265 1.0315 15 8 4.9485 0.7093 1.9869 16 6 4.5893 0.0908 -0.2233 17 16 3.5403 -0.1704 -1.6098 18 6 4.8019 -0.9088 -2.4885 19 6 5.9307 -0.9437 -1.7752 20 6 5.8401 -0.3994 -0.5090 21 7 6.9128 -0.3475 0.3873 22 6 7.3355 0.7636 1.0602 23 6 8.3880 0.4160 1.8279 24 6 8.6317 -0.9562 1.6158 25 6 7.7154 -1.3981 0.7307 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3587 2.1317 0.0897 30 1 2.6213 1.4026 -0.9314 31 1 1.5382 1.9718 2.4990 32 1 3.1058 1.5289 3.2164 33 1 2.0240 4.4510 5.1788 34 1 4.7021 -1.2946 -3.4924 35 1 6.8460 -1.3693 -2.1589 36 1 6.9003 1.7496 0.9910 37 1 8.9450 1.0700 2.4824 38 1 9.4103 -1.5455 2.0773 39 1 7.6310 -2.4080 0.3575 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359394783.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:32 Heat of formation + Delta-G solvation = 75.910443 kcal Electronic energy + Delta-G solvation = -24097.699556 eV Core-core repulsion = 20712.876904 eV Total energy + Delta-G solvation = -3384.822652 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.45443 -40.71183 -38.62384 -37.28476 -35.24188 -33.78802 -32.81809 -31.07447 -29.75009 -29.02346 -27.21022 -26.00746 -24.62771 -22.37090 -21.80575 -21.28015 -20.89404 -20.01405 -19.02157 -18.66665 -18.30913 -16.98977 -16.89630 -16.39620 -16.13240 -15.83614 -15.55875 -15.33774 -14.82338 -14.50631 -14.44816 -14.23578 -14.09818 -13.79092 -13.55782 -13.31787 -13.24188 -13.11122 -13.01954 -12.93233 -12.63295 -12.30840 -12.23632 -11.80865 -11.50225 -10.90893 -10.67947 -10.57742 -10.27282 -9.77996 -9.56716 -9.03519 -9.01173 -8.25805 -6.40959 -0.69908 0.29404 0.85530 1.01816 1.28591 1.34324 1.38665 1.45764 1.61870 2.07194 2.11695 2.16863 2.30998 2.39545 3.04173 3.51118 3.87190 3.96958 4.02854 4.09817 4.22325 4.30053 4.32429 4.54635 4.68281 4.70054 4.78665 4.90856 4.99908 5.00922 5.07061 5.17465 5.32518 5.39086 5.43687 5.64067 5.70210 5.83700 6.00105 6.05623 6.25828 6.53628 6.58166 6.67055 7.18703 7.33854 8.81325 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010879 B = 0.005855 C = 0.004225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.134311 B = 4781.205534 C = 6625.372190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.205 4.205 3 C 0.121 3.879 4 N -0.592 5.592 5 C 0.269 3.731 6 C -0.545 4.545 7 H 0.052 0.948 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.964 3.036 11 H -0.258 1.258 12 H -0.277 1.277 13 H -0.280 1.280 14 C 0.563 3.437 15 O -0.566 6.566 16 C -0.322 4.322 17 S 0.345 5.655 18 C -0.237 4.237 19 C -0.162 4.162 20 C 0.160 3.840 21 N -0.392 5.392 22 C 0.019 3.981 23 C -0.222 4.222 24 C -0.200 4.200 25 C -0.019 4.019 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.028 0.972 32 H -0.003 1.003 33 H 0.268 0.732 34 H 0.214 0.786 35 H 0.165 0.835 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.162 0.838 39 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.170 -11.713 -18.382 21.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.225 4.225 3 C -0.003 4.003 4 N -0.322 5.322 5 C 0.149 3.851 6 C -0.583 4.583 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.565 5.565 10 Si 0.789 3.211 11 H -0.182 1.182 12 H -0.202 1.202 13 H -0.206 1.206 14 C 0.352 3.648 15 O -0.447 6.447 16 C -0.444 4.444 17 S 0.616 5.384 18 C -0.374 4.374 19 C -0.192 4.192 20 C 0.052 3.948 21 N -0.066 5.066 22 C -0.109 4.109 23 C -0.246 4.246 24 C -0.224 4.224 25 C -0.146 4.146 26 H 0.125 0.875 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.015 0.985 33 H 0.077 0.923 34 H 0.231 0.769 35 H 0.182 0.818 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.180 0.820 39 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -0.284 -11.364 -18.271 21.519 hybrid contribution 1.850 0.902 1.181 2.373 sum 1.566 -10.463 -17.090 20.099 Atomic orbital electron populations 1.24138 0.94780 1.03633 0.95453 1.23262 0.97301 0.97380 1.04560 1.21158 0.92848 0.98261 0.88024 1.48083 1.15330 1.52319 1.16454 1.18744 0.94729 0.90715 0.80941 1.21607 1.38633 0.95493 1.02593 0.92996 1.25805 0.94817 1.03542 0.94506 1.70037 1.42158 1.37734 1.06523 0.85518 0.78465 0.78943 0.78215 1.18205 1.20174 1.20604 1.17347 0.81919 0.78700 0.86824 1.90848 1.52374 1.61488 1.39992 1.24735 0.99773 1.17485 1.02430 1.83629 1.07357 1.48591 0.98859 1.26308 0.99201 1.04379 1.07530 1.19768 1.02182 1.06336 0.90897 1.17512 0.85418 1.00769 0.91082 1.41036 1.22798 1.09114 1.33626 1.21575 0.98335 0.91375 0.99660 1.21093 1.01329 0.97672 1.04513 1.21175 1.03092 0.94901 1.03217 1.22350 0.94894 0.93334 1.03976 0.87537 0.85662 0.86630 0.88083 0.88975 0.95362 0.98454 0.92297 0.76868 0.81799 0.85428 0.84244 0.82008 0.79177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 14.32 67.79 0.97 -1.95 16 2 C -0.20 -5.19 7.92 25.65 0.20 -4.99 16 3 C 0.12 3.84 5.43 85.63 0.46 4.30 16 4 N -0.59 -26.24 2.46 -835.82 -2.06 -28.30 16 5 C 0.27 14.79 5.14 85.63 0.44 15.23 16 6 C -0.54 -31.65 9.39 25.60 0.24 -31.41 16 7 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 8 C 0.01 0.75 5.46 84.66 0.46 1.21 16 9 N -0.93 -56.21 13.29 21.45 0.28 -55.92 16 10 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 14 C 0.56 25.74 7.41 86.29 0.64 26.38 16 15 O -0.57 -31.26 13.09 -4.54 -0.06 -31.32 16 16 C -0.32 -11.10 6.20 24.11 0.15 -10.95 16 17 S 0.35 7.18 15.56 -56.49 -0.88 6.30 16 18 C -0.24 -3.82 10.90 66.76 0.73 -3.09 16 19 C -0.16 -3.55 9.97 21.18 0.21 -3.34 16 20 C 0.16 5.16 5.98 37.62 0.22 5.39 16 21 N -0.39 -14.19 2.59 -348.78 -0.90 -15.10 16 22 C 0.02 0.79 8.60 83.17 0.72 1.50 16 23 C -0.22 -8.29 10.86 22.16 0.24 -8.05 16 24 C -0.20 -6.29 10.86 22.16 0.24 -6.05 16 25 C -0.02 -0.59 11.25 83.17 0.94 0.34 16 26 H 0.11 2.11 7.84 -2.91 -0.02 2.08 16 27 H 0.13 1.95 8.06 -2.91 -0.02 1.92 16 28 H 0.12 2.84 6.88 -2.91 -0.02 2.82 16 29 H 0.10 3.23 7.67 -2.39 -0.02 3.21 16 30 H 0.09 2.51 4.51 -21.15 -0.10 2.41 16 31 H 0.03 1.56 8.07 -2.38 -0.02 1.54 16 32 H 0.00 -0.17 7.39 -2.39 -0.02 -0.19 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.13 5.85 7.73 -2.91 -0.02 5.83 16 37 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 38 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 39 H 0.19 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -79.26 342.09 6.25 -73.02 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.97 Total: 19.59 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 6.87 Total: -15.48 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -2.68 Total: -99.32 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.06 Total: -31.32 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Atomic # 16 Polarization: 7.18 SS G_CDS: -0.88 Total: 6.30 kcal Total: -79.26 6.25 -73.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359394783.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.926 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds