Wall clock time and date at job start Tue Mar 31 2020 11:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 N 1.46502 * 109.47348 * 179.97438 * 3 2 1 5 5 C 1.36827 * 120.00483 * 262.41338 * 4 3 2 6 6 H 1.07998 * 120.00168 * 195.34304 * 5 4 3 7 7 C 1.39059 * 120.00074 * 15.33756 * 5 4 3 8 8 N 1.31360 * 119.99603 * 19.30546 * 7 5 4 9 9 Si 1.86796 * 120.00278 * 199.30653 * 7 5 4 10 10 H 1.48507 * 109.46847 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47350 * 119.99732 * 9 7 5 12 12 H 1.48493 * 109.47038 * 240.00106 * 9 7 5 13 13 C 1.34782 * 119.99657 * 82.40761 * 4 3 2 14 14 O 1.21670 * 119.99942 * 182.17024 * 13 4 3 15 15 C 1.46999 * 119.99922 * 2.16969 * 13 4 3 16 16 C 1.38197 * 127.87940 * 172.39381 * 15 13 4 17 17 C 1.38561 * 111.24563 * 180.18934 * 16 15 13 18 18 C 1.48410 * 121.24351 * 179.79122 * 17 16 15 19 19 C 1.39326 * 120.11783 * 359.46423 * 18 17 16 20 20 C 1.38024 * 119.88014 * 179.74573 * 19 18 17 21 21 C 1.38326 * 120.11569 * 0.53406 * 20 19 18 22 22 C 1.38321 * 120.24296 * 359.74378 * 21 20 19 23 23 C 1.38019 * 120.11656 * 359.97325 * 22 21 20 24 24 N 1.30338 * 117.51972 * 359.51652 * 17 16 15 25 25 S 1.56258 * 110.39004 * 0.27809 * 24 17 16 26 26 H 1.09002 * 109.46909 * 300.00054 * 1 2 3 27 27 H 1.09004 * 109.46944 * 59.99960 * 1 2 3 28 28 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47555 * 239.99708 * 2 1 3 30 30 H 1.09001 * 109.46762 * 119.99540 * 2 1 3 31 31 H 1.09002 * 109.47284 * 60.00176 * 3 2 1 32 32 H 1.09004 * 109.47255 * 299.99849 * 3 2 1 33 33 H 0.97004 * 119.99774 * 180.02562 * 8 7 5 34 34 H 1.08007 * 124.38000 * 0.02562 * 16 15 13 35 35 H 1.08001 * 120.06328 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.94435 * 180.27686 * 20 19 18 37 37 H 1.07995 * 119.87827 * 179.72093 * 21 20 19 38 38 H 1.07993 * 119.93848 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.05419 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1888 1.5992 1.1754 6 1 5.2399 1.8467 1.1596 7 6 3.5302 1.4398 2.3898 8 7 2.3923 0.7854 2.4388 9 14 4.2637 2.1562 3.9512 10 1 5.5415 2.8409 3.6289 11 1 3.3136 3.1327 4.5417 12 1 4.5196 1.0640 4.9242 13 6 4.1794 1.2882 -1.1561 14 8 5.3954 1.2486 -1.1508 15 6 3.4456 1.1676 -2.4242 16 6 3.9630 1.1496 -3.7055 17 6 2.9578 1.0262 -4.6512 18 6 3.2666 0.9884 -6.1023 19 6 4.5857 1.0888 -6.5392 20 6 4.8678 1.0478 -7.8897 21 6 3.8426 0.9185 -8.8093 22 6 2.5306 0.8242 -8.3813 23 6 2.2379 0.8583 -7.0329 24 7 1.7314 0.9390 -4.2186 25 16 1.6986 1.0056 -2.6578 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.9327 0.6745 3.2858 34 1 5.0147 1.2248 -3.9397 35 1 5.3865 1.1947 -5.8224 36 1 5.8904 1.1210 -8.2293 37 1 4.0672 0.8914 -9.8652 38 1 1.7340 0.7230 -9.1034 39 1 1.2132 0.7842 -6.6998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359967627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:36 Heat of formation + Delta-G solvation = 46.603234 kcal Electronic energy + Delta-G solvation = -23477.574380 eV Core-core repulsion = 20091.480872 eV Total energy + Delta-G solvation = -3386.093508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.76381 -38.78351 -37.81676 -35.45827 -32.78308 -31.61371 -31.25947 -31.13935 -30.38195 -26.47392 -25.56515 -24.42713 -22.88841 -22.01360 -20.96639 -20.33003 -18.78638 -17.95733 -17.14748 -17.03846 -15.93465 -15.30609 -14.88205 -14.66475 -14.53590 -14.32516 -14.09344 -13.75047 -13.64212 -13.42766 -12.88975 -12.72727 -12.60023 -12.32082 -11.99283 -11.60210 -11.38973 -11.20650 -11.15640 -10.99757 -10.67311 -10.65422 -10.51790 -10.43631 -10.08625 -9.78026 -9.29340 -9.15865 -9.02051 -8.92475 -8.67856 -8.00472 -7.63214 -6.60136 -4.03142 0.72587 1.29893 1.43248 1.86811 2.43098 2.81733 3.04577 3.13570 3.20157 3.89616 3.94396 4.08416 4.48198 4.86548 4.89035 4.92499 4.98051 5.14376 5.34586 5.49338 5.54272 5.55357 5.77027 5.87230 5.90722 5.99736 6.02635 6.07534 6.21667 6.32873 6.45878 6.46485 6.50081 6.56510 6.58715 6.72668 6.98275 7.03051 7.14173 7.23495 7.57015 7.83449 8.24358 8.91278 9.09521 9.71629 10.36118 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.003593 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.765428 B = 7791.982757 C = 8757.570796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.116 3.884 4 N -0.416 5.416 5 C -0.293 4.293 6 H 0.111 0.889 7 C 0.032 3.968 8 N -0.853 5.853 9 Si 0.930 3.070 10 H -0.265 1.265 11 H -0.277 1.277 12 H -0.279 1.279 13 C 0.496 3.504 14 O -0.580 6.580 15 C -0.220 4.220 16 C -0.146 4.146 17 C 0.121 3.879 18 C -0.015 4.015 19 C -0.102 4.102 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.090 4.090 24 N -0.578 5.578 25 S 0.443 5.557 26 H 0.057 0.943 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.036 0.964 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.037 0.963 33 H 0.273 0.727 34 H 0.165 0.835 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 0.240 -11.945 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C -0.010 4.010 4 N -0.131 5.131 5 C -0.422 4.422 6 H 0.128 0.872 7 C -0.174 4.174 8 N -0.491 5.491 9 Si 0.756 3.244 10 H -0.189 1.189 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.285 3.715 14 O -0.466 6.466 15 C -0.353 4.353 16 C -0.180 4.180 17 C -0.048 4.048 18 C -0.019 4.019 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.110 4.110 24 N -0.407 5.407 25 S 0.603 5.397 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.183 0.817 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.758 0.004 -11.406 12.777 hybrid contribution 1.862 0.347 0.121 1.898 sum -3.896 0.351 -11.284 11.943 Atomic orbital electron populations 1.21642 0.96486 1.00706 1.00819 1.22099 0.94845 0.97338 1.03060 1.21814 0.80788 0.97856 1.00558 1.43753 1.05421 1.58076 1.05889 1.19930 0.96811 1.43978 0.81487 0.87163 1.25416 0.96475 0.95793 0.99695 1.69992 1.16643 1.35117 1.27368 0.85788 0.79424 0.78933 0.80249 1.18947 1.20295 1.20483 1.16483 0.86821 0.86464 0.81701 1.90647 1.12543 1.57672 1.85775 1.27149 1.00325 1.08873 0.98998 1.21653 1.01346 1.05008 0.89984 1.19269 0.87075 1.04023 0.94456 1.18319 0.93478 1.00552 0.89520 1.21302 0.95673 0.99175 0.96123 1.21048 0.99285 1.00810 0.92817 1.21188 0.92992 1.00392 0.99440 1.21084 0.96650 1.01097 0.95515 1.21257 0.99467 0.97986 0.92322 1.71867 1.25869 1.25436 1.17514 1.82604 1.04033 1.58404 0.94639 0.92366 0.94068 0.93452 0.94576 0.86741 0.86920 0.94595 0.91587 0.81738 0.85318 0.85821 0.86236 0.86065 0.85256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.79 37.16 0.36 -1.81 16 2 C -0.13 -2.60 4.67 -26.73 -0.12 -2.73 16 3 C 0.12 2.42 4.12 -4.04 -0.02 2.40 16 4 N -0.42 -10.15 2.64 -116.19 -0.31 -10.46 16 5 C -0.29 -7.55 9.37 -15.02 -0.14 -7.69 16 6 H 0.11 3.00 7.35 -52.49 -0.39 2.62 16 7 C 0.03 0.75 4.95 -17.45 -0.09 0.66 16 8 N -0.85 -19.58 8.40 55.50 0.47 -19.12 16 9 Si 0.93 18.78 29.60 -169.99 -5.03 13.75 16 10 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 13 C 0.50 12.33 7.55 -12.71 -0.10 12.24 16 14 O -0.58 -16.18 16.60 5.22 0.09 -16.10 16 15 C -0.22 -4.64 6.26 -36.05 -0.23 -4.86 16 16 C -0.15 -2.78 9.63 -39.48 -0.38 -3.16 16 17 C 0.12 2.16 6.58 -84.19 -0.55 1.60 16 18 C -0.01 -0.22 5.88 -104.90 -0.62 -0.84 16 19 C -0.10 -1.36 9.45 -39.26 -0.37 -1.73 16 20 C -0.12 -1.35 10.03 -39.63 -0.40 -1.75 16 21 C -0.12 -1.26 10.04 -39.52 -0.40 -1.66 16 22 C -0.13 -1.42 10.03 -39.63 -0.40 -1.81 16 23 C -0.09 -1.25 9.60 -39.26 -0.38 -1.63 16 24 N -0.58 -10.48 10.50 25.62 0.27 -10.21 16 25 S 0.44 7.95 15.33 -107.50 -1.65 6.30 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.59 7.25 -51.93 -0.38 0.21 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.70 6.05 -49.18 -0.30 0.41 16 30 H 0.11 2.53 6.06 -51.93 -0.31 2.22 16 31 H 0.11 2.46 6.07 -51.93 -0.32 2.14 16 32 H 0.04 0.70 4.61 -24.91 -0.11 0.59 16 33 H 0.27 5.90 8.31 -40.82 -0.34 5.56 16 34 H 0.17 2.91 6.66 -52.48 -0.35 2.56 16 35 H 0.13 1.60 6.46 -52.49 -0.34 1.26 16 36 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 LS Contribution 329.21 15.07 4.96 4.96 Total: -1.00 -28.39 329.21 -9.16 -37.55 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.14 Total: 6.10 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -3.82 Total: -12.76 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.43 Total: -39.79 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -1.65 Total: 6.30 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.39 -9.16 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359967627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.149 kcal (2) G-P(sol) polarization free energy of solvation -28.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds