Wall clock time and date at job start Tue Mar 31 2020 11:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47098 * 2 1 4 4 N 1.46502 * 109.47348 * 179.97438 * 3 2 1 5 5 C 1.36827 * 120.00483 * 262.41338 * 4 3 2 6 6 H 1.07998 * 120.00168 * 195.34304 * 5 4 3 7 7 C 1.39059 * 120.00074 * 15.33756 * 5 4 3 8 8 N 1.31360 * 119.99603 * 19.30546 * 7 5 4 9 9 Si 1.86796 * 120.00278 * 199.30653 * 7 5 4 10 10 H 1.48507 * 109.46847 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47350 * 119.99732 * 9 7 5 12 12 H 1.48493 * 109.47038 * 240.00106 * 9 7 5 13 13 C 1.34782 * 119.99657 * 82.40761 * 4 3 2 14 14 O 1.21670 * 119.99942 * 182.17024 * 13 4 3 15 15 C 1.46999 * 119.99922 * 2.16969 * 13 4 3 16 16 C 1.38197 * 127.87940 * 172.39381 * 15 13 4 17 17 C 1.38561 * 111.24563 * 180.18934 * 16 15 13 18 18 C 1.48410 * 121.24351 * 179.79122 * 17 16 15 19 19 C 1.39326 * 120.11783 * 359.46423 * 18 17 16 20 20 C 1.38024 * 119.88014 * 179.74573 * 19 18 17 21 21 C 1.38326 * 120.11569 * 0.53406 * 20 19 18 22 22 C 1.38321 * 120.24296 * 359.74378 * 21 20 19 23 23 C 1.38019 * 120.11656 * 359.97325 * 22 21 20 24 24 N 1.30338 * 117.51972 * 359.51652 * 17 16 15 25 25 S 1.56258 * 110.39004 * 0.27809 * 24 17 16 26 26 H 1.09002 * 109.46909 * 300.00054 * 1 2 3 27 27 H 1.09004 * 109.46944 * 59.99960 * 1 2 3 28 28 H 1.08996 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47555 * 239.99708 * 2 1 3 30 30 H 1.09001 * 109.46762 * 119.99540 * 2 1 3 31 31 H 1.09002 * 109.47284 * 60.00176 * 3 2 1 32 32 H 1.09004 * 109.47255 * 299.99849 * 3 2 1 33 33 H 0.97004 * 119.99774 * 180.02562 * 8 7 5 34 34 H 1.08007 * 124.38000 * 0.02562 * 16 15 13 35 35 H 1.08001 * 120.06328 * 359.97438 * 19 18 17 36 36 H 1.07997 * 119.94435 * 180.27686 * 20 19 18 37 37 H 1.07995 * 119.87827 * 179.72093 * 21 20 19 38 38 H 1.07993 * 119.93848 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.05419 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1888 1.5992 1.1754 6 1 5.2399 1.8467 1.1596 7 6 3.5302 1.4398 2.3898 8 7 2.3923 0.7854 2.4388 9 14 4.2637 2.1562 3.9512 10 1 5.5415 2.8409 3.6289 11 1 3.3136 3.1327 4.5417 12 1 4.5196 1.0640 4.9242 13 6 4.1794 1.2882 -1.1561 14 8 5.3954 1.2486 -1.1508 15 6 3.4456 1.1676 -2.4242 16 6 3.9630 1.1496 -3.7055 17 6 2.9578 1.0262 -4.6512 18 6 3.2666 0.9884 -6.1023 19 6 4.5857 1.0888 -6.5392 20 6 4.8678 1.0478 -7.8897 21 6 3.8426 0.9185 -8.8093 22 6 2.5306 0.8242 -8.3813 23 6 2.2379 0.8583 -7.0329 24 7 1.7314 0.9390 -4.2186 25 16 1.6986 1.0056 -2.6578 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.9327 0.6745 3.2858 34 1 5.0147 1.2248 -3.9397 35 1 5.3865 1.1947 -5.8224 36 1 5.8904 1.1210 -8.2293 37 1 4.0672 0.8914 -9.8652 38 1 1.7340 0.7230 -9.1034 39 1 1.2132 0.7842 -6.6998 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359967627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:36 Heat of formation + Delta-G solvation = 31.992111 kcal Electronic energy + Delta-G solvation = -23478.207966 eV Core-core repulsion = 20091.480872 eV Total energy + Delta-G solvation = -3386.727094 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.07594 -40.51003 -39.02401 -37.30709 -34.48629 -33.35162 -32.60348 -32.17517 -31.56730 -28.16592 -27.09926 -25.93244 -24.15796 -23.14917 -22.50061 -21.64061 -20.38370 -19.60965 -18.97660 -18.15939 -17.40936 -16.82467 -16.23121 -16.16589 -16.06725 -15.80228 -15.43346 -15.32047 -15.13428 -14.44058 -14.37709 -14.05198 -13.87709 -13.72161 -13.61445 -13.17448 -12.81541 -12.67960 -12.44005 -12.36810 -12.23607 -12.13068 -12.07585 -11.88267 -11.60014 -11.26460 -10.97623 -10.71202 -10.60915 -10.37656 -9.85479 -9.79546 -8.96079 -8.41578 -5.97440 -0.72058 0.09767 0.31822 0.50394 0.97495 1.36880 1.45626 1.53550 1.57906 2.20262 2.23476 2.78139 2.97465 3.02647 3.52115 3.80444 3.96758 4.02799 4.13611 4.18102 4.29141 4.40282 4.48161 4.50393 4.58257 4.67604 4.76033 4.82898 4.99713 5.05090 5.10554 5.15592 5.28670 5.35881 5.38881 5.52871 5.56547 5.60122 5.82123 5.87964 5.94834 6.07507 6.39533 7.02348 7.23198 7.83720 8.53183 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.003593 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.765428 B = 7791.982757 C = 8757.570796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.127 4.127 3 C 0.118 3.882 4 N -0.422 5.422 5 C -0.344 4.344 6 H 0.080 0.920 7 C 0.012 3.988 8 N -0.853 5.853 9 Si 0.992 3.008 10 H -0.278 1.278 11 H -0.261 1.261 12 H -0.273 1.273 13 C 0.482 3.518 14 O -0.629 6.629 15 C -0.258 4.258 16 C -0.137 4.137 17 C 0.124 3.876 18 C -0.049 4.049 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.109 4.109 22 C -0.124 4.124 23 C -0.102 4.102 24 N -0.578 5.578 25 S 0.483 5.517 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.283 0.717 34 H 0.171 0.829 35 H 0.128 0.872 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.530 0.152 -14.047 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C -0.007 4.007 4 N -0.137 5.137 5 C -0.472 4.472 6 H 0.098 0.902 7 C -0.194 4.194 8 N -0.489 5.489 9 Si 0.815 3.185 10 H -0.203 1.203 11 H -0.186 1.186 12 H -0.198 1.198 13 C 0.272 3.728 14 O -0.519 6.519 15 C -0.390 4.390 16 C -0.172 4.172 17 C -0.045 4.045 18 C -0.053 4.053 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.122 4.122 24 N -0.407 5.407 25 S 0.644 5.356 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.188 0.812 35 H 0.146 0.854 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.359 -0.094 -13.485 15.363 hybrid contribution 2.313 0.330 0.556 2.402 sum -5.046 0.236 -12.929 13.881 Atomic orbital electron populations 1.21592 0.93333 1.02205 1.01766 1.21976 0.97466 0.95740 1.01442 1.21924 0.78941 0.99016 1.00858 1.43927 1.06754 1.57502 1.05507 1.19789 0.96363 1.47921 0.83123 0.90229 1.26056 0.96869 0.95121 1.01360 1.70053 1.16595 1.33719 1.28511 0.84905 0.78439 0.78395 0.76760 1.20254 1.18589 1.19839 1.16971 0.86670 0.86174 0.82976 1.90575 1.14604 1.59855 1.86844 1.26889 1.02676 1.11476 0.98007 1.21885 1.02175 1.03550 0.89626 1.19507 0.86350 1.02795 0.95847 1.18394 0.94967 1.03761 0.88152 1.21453 0.94882 0.99461 0.97552 1.21418 1.01128 0.99527 0.91786 1.21660 0.92233 0.97716 1.01177 1.21427 0.98138 0.99841 0.94754 1.21328 0.98755 0.98666 0.93467 1.71888 1.26016 1.25498 1.17340 1.82215 1.01220 1.57669 0.94509 0.92120 0.92374 0.91710 0.95030 0.89507 0.87900 0.92930 0.90660 0.81200 0.85407 0.83039 0.82625 0.83231 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.79 71.98 0.70 -3.20 16 2 C -0.13 -4.95 4.67 30.59 0.14 -4.80 16 3 C 0.12 5.01 4.12 86.38 0.36 5.37 16 4 N -0.42 -21.71 2.64 -639.73 -1.69 -23.40 16 5 C -0.34 -18.72 9.37 84.11 0.79 -17.94 16 6 H 0.08 4.71 7.35 -2.91 -0.02 4.69 16 7 C 0.01 0.57 4.95 84.96 0.42 0.99 16 8 N -0.85 -39.36 8.40 21.68 0.18 -39.18 16 9 Si 0.99 39.02 29.60 68.60 2.03 41.05 16 10 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16 11 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 12 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 13 C 0.48 25.40 7.55 86.54 0.65 26.05 16 14 O -0.63 -37.63 16.60 -4.25 -0.07 -37.70 16 15 C -0.26 -11.24 6.26 24.56 0.15 -11.09 16 16 C -0.14 -5.37 9.63 22.34 0.22 -5.15 16 17 C 0.12 4.41 6.58 42.15 0.28 4.69 16 18 C -0.05 -1.45 5.88 -20.04 -0.12 -1.57 16 19 C -0.11 -2.87 9.45 22.48 0.21 -2.66 16 20 C -0.12 -2.30 10.03 22.24 0.22 -2.08 16 21 C -0.11 -1.81 10.04 22.31 0.22 -1.59 16 22 C -0.12 -2.37 10.03 22.24 0.22 -2.15 16 23 C -0.10 -2.65 9.60 22.48 0.22 -2.44 16 24 N -0.58 -20.60 10.50 -72.87 -0.76 -21.36 16 25 S 0.48 17.19 15.33 -56.49 -0.87 16.33 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.52 7.25 -2.38 -0.02 1.51 16 28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 1.24 6.05 -4.14 -0.03 1.22 16 30 H 0.09 3.91 6.06 -2.39 -0.01 3.89 16 31 H 0.10 4.56 6.07 -2.39 -0.01 4.54 16 32 H 0.05 2.05 4.61 -19.56 -0.09 1.96 16 33 H 0.28 11.98 8.31 -92.71 -0.77 11.21 16 34 H 0.17 6.27 6.66 -2.91 -0.02 6.26 16 35 H 0.13 3.15 6.46 -2.91 -0.02 3.13 16 36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.12 3.26 7.62 -2.91 -0.02 3.24 16 Total: -1.00 -65.16 329.21 4.51 -60.65 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 1.00 Total: 21.17 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 4.69 Total: -17.55 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -2.27 Total: -83.94 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.07 Total: -37.70 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal Atomic # 16 Polarization: 17.19 SS G_CDS: -0.87 Total: 16.33 kcal Total: -65.16 4.51 -60.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359967627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.641 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds