Wall clock time and date at job start Tue Mar 31 2020 11:06:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52998 * 109.47098 * 2 1
4 4 N 1.46502 * 109.47348 * 179.97438 * 3 2 1
5 5 C 1.36827 * 120.00483 * 262.41338 * 4 3 2
6 6 H 1.07998 * 120.00168 * 195.34304 * 5 4 3
7 7 C 1.39059 * 120.00074 * 15.33756 * 5 4 3
8 8 N 1.31360 * 119.99603 * 19.30546 * 7 5 4
9 9 Si 1.86796 * 120.00278 * 199.30653 * 7 5 4
10 10 H 1.48507 * 109.46847 * 359.97438 * 9 7 5
11 11 H 1.48495 * 109.47350 * 119.99732 * 9 7 5
12 12 H 1.48493 * 109.47038 * 240.00106 * 9 7 5
13 13 C 1.34782 * 119.99657 * 82.40761 * 4 3 2
14 14 O 1.21670 * 119.99942 * 182.17024 * 13 4 3
15 15 C 1.46999 * 119.99922 * 2.16969 * 13 4 3
16 16 C 1.38197 * 127.87940 * 172.39381 * 15 13 4
17 17 C 1.38561 * 111.24563 * 180.18934 * 16 15 13
18 18 C 1.48410 * 121.24351 * 179.79122 * 17 16 15
19 19 C 1.39326 * 120.11783 * 359.46423 * 18 17 16
20 20 C 1.38024 * 119.88014 * 179.74573 * 19 18 17
21 21 C 1.38326 * 120.11569 * 0.53406 * 20 19 18
22 22 C 1.38321 * 120.24296 * 359.74378 * 21 20 19
23 23 C 1.38019 * 120.11656 * 359.97325 * 22 21 20
24 24 N 1.30338 * 117.51972 * 359.51652 * 17 16 15
25 25 S 1.56258 * 110.39004 * 0.27809 * 24 17 16
26 26 H 1.09002 * 109.46909 * 300.00054 * 1 2 3
27 27 H 1.09004 * 109.46944 * 59.99960 * 1 2 3
28 28 H 1.08996 * 109.46983 * 180.02562 * 1 2 3
29 29 H 1.08996 * 109.47555 * 239.99708 * 2 1 3
30 30 H 1.09001 * 109.46762 * 119.99540 * 2 1 3
31 31 H 1.09002 * 109.47284 * 60.00176 * 3 2 1
32 32 H 1.09004 * 109.47255 * 299.99849 * 3 2 1
33 33 H 0.97004 * 119.99774 * 180.02562 * 8 7 5
34 34 H 1.08007 * 124.38000 * 0.02562 * 16 15 13
35 35 H 1.08001 * 120.06328 * 359.97438 * 19 18 17
36 36 H 1.07997 * 119.94435 * 180.27686 * 20 19 18
37 37 H 1.07995 * 119.87827 * 179.72093 * 21 20 19
38 38 H 1.07993 * 119.93848 * 180.02562 * 22 21 20
39 39 H 1.08002 * 120.05419 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 0.0006
5 6 4.1888 1.5992 1.1754
6 1 5.2399 1.8467 1.1596
7 6 3.5302 1.4398 2.3898
8 7 2.3923 0.7854 2.4388
9 14 4.2637 2.1562 3.9512
10 1 5.5415 2.8409 3.6289
11 1 3.3136 3.1327 4.5417
12 1 4.5196 1.0640 4.9242
13 6 4.1794 1.2882 -1.1561
14 8 5.3954 1.2486 -1.1508
15 6 3.4456 1.1676 -2.4242
16 6 3.9630 1.1496 -3.7055
17 6 2.9578 1.0262 -4.6512
18 6 3.2666 0.9884 -6.1023
19 6 4.5857 1.0888 -6.5392
20 6 4.8678 1.0478 -7.8897
21 6 3.8426 0.9185 -8.8093
22 6 2.5306 0.8242 -8.3813
23 6 2.2379 0.8583 -7.0329
24 7 1.7314 0.9390 -4.2186
25 16 1.6986 1.0056 -2.6578
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5139 -0.8900
28 1 -0.3633 -1.0276 0.0005
29 1 1.8934 -0.5138 -0.8899
30 1 1.8933 -0.5138 0.8901
31 1 1.6767 1.9563 0.8900
32 1 1.6767 1.9563 -0.8900
33 1 1.9327 0.6745 3.2858
34 1 5.0147 1.2248 -3.9397
35 1 5.3865 1.1947 -5.8224
36 1 5.8904 1.1210 -8.2293
37 1 4.0672 0.8914 -9.8652
38 1 1.7340 0.7230 -9.1034
39 1 1.2132 0.7842 -6.6998
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000359967627.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:06:36
Heat of formation + Delta-G solvation = 31.992111 kcal
Electronic energy + Delta-G solvation = -23478.207966 eV
Core-core repulsion = 20091.480872 eV
Total energy + Delta-G solvation = -3386.727094 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.099 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-41.07594 -40.51003 -39.02401 -37.30709 -34.48629 -33.35162 -32.60348 -32.17517
-31.56730 -28.16592 -27.09926 -25.93244 -24.15796 -23.14917 -22.50061 -21.64061
-20.38370 -19.60965 -18.97660 -18.15939 -17.40936 -16.82467 -16.23121 -16.16589
-16.06725 -15.80228 -15.43346 -15.32047 -15.13428 -14.44058 -14.37709 -14.05198
-13.87709 -13.72161 -13.61445 -13.17448 -12.81541 -12.67960 -12.44005 -12.36810
-12.23607 -12.13068 -12.07585 -11.88267 -11.60014 -11.26460 -10.97623 -10.71202
-10.60915 -10.37656 -9.85479 -9.79546 -8.96079 -8.41578 -5.97440 -0.72058
0.09767 0.31822 0.50394 0.97495 1.36880 1.45626 1.53550 1.57906
2.20262 2.23476 2.78139 2.97465 3.02647 3.52115 3.80444 3.96758
4.02799 4.13611 4.18102 4.29141 4.40282 4.48161 4.50393 4.58257
4.67604 4.76033 4.82898 4.99713 5.05090 5.10554 5.15592 5.28670
5.35881 5.38881 5.52871 5.56547 5.60122 5.82123 5.87964 5.94834
6.07507 6.39533 7.02348 7.23198 7.83720 8.53183
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.025408 B = 0.003593 C = 0.003196
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1101.765428 B = 7791.982757 C = 8757.570796
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.127 4.127
3 C 0.118 3.882
4 N -0.422 5.422
5 C -0.344 4.344
6 H 0.080 0.920
7 C 0.012 3.988
8 N -0.853 5.853
9 Si 0.992 3.008
10 H -0.278 1.278
11 H -0.261 1.261
12 H -0.273 1.273
13 C 0.482 3.518
14 O -0.629 6.629
15 C -0.258 4.258
16 C -0.137 4.137
17 C 0.124 3.876
18 C -0.049 4.049
19 C -0.113 4.113
20 C -0.121 4.121
21 C -0.109 4.109
22 C -0.124 4.124
23 C -0.102 4.102
24 N -0.578 5.578
25 S 0.483 5.517
26 H 0.060 0.940
27 H 0.057 0.943
28 H 0.064 0.936
29 H 0.031 0.969
30 H 0.087 0.913
31 H 0.103 0.897
32 H 0.054 0.946
33 H 0.283 0.717
34 H 0.171 0.829
35 H 0.128 0.872
36 H 0.152 0.848
37 H 0.156 0.844
38 H 0.150 0.850
39 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.530 0.152 -14.047 15.097
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.166 4.166
3 C -0.007 4.007
4 N -0.137 5.137
5 C -0.472 4.472
6 H 0.098 0.902
7 C -0.194 4.194
8 N -0.489 5.489
9 Si 0.815 3.185
10 H -0.203 1.203
11 H -0.186 1.186
12 H -0.198 1.198
13 C 0.272 3.728
14 O -0.519 6.519
15 C -0.390 4.390
16 C -0.172 4.172
17 C -0.045 4.045
18 C -0.053 4.053
19 C -0.133 4.133
20 C -0.139 4.139
21 C -0.128 4.128
22 C -0.142 4.142
23 C -0.122 4.122
24 N -0.407 5.407
25 S 0.644 5.356
26 H 0.079 0.921
27 H 0.076 0.924
28 H 0.083 0.917
29 H 0.050 0.950
30 H 0.105 0.895
31 H 0.121 0.879
32 H 0.071 0.929
33 H 0.093 0.907
34 H 0.188 0.812
35 H 0.146 0.854
36 H 0.170 0.830
37 H 0.174 0.826
38 H 0.168 0.832
39 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -7.359 -0.094 -13.485 15.363
hybrid contribution 2.313 0.330 0.556 2.402
sum -5.046 0.236 -12.929 13.881
Atomic orbital electron populations
1.21592 0.93333 1.02205 1.01766 1.21976 0.97466 0.95740 1.01442
1.21924 0.78941 0.99016 1.00858 1.43927 1.06754 1.57502 1.05507
1.19789 0.96363 1.47921 0.83123 0.90229 1.26056 0.96869 0.95121
1.01360 1.70053 1.16595 1.33719 1.28511 0.84905 0.78439 0.78395
0.76760 1.20254 1.18589 1.19839 1.16971 0.86670 0.86174 0.82976
1.90575 1.14604 1.59855 1.86844 1.26889 1.02676 1.11476 0.98007
1.21885 1.02175 1.03550 0.89626 1.19507 0.86350 1.02795 0.95847
1.18394 0.94967 1.03761 0.88152 1.21453 0.94882 0.99461 0.97552
1.21418 1.01128 0.99527 0.91786 1.21660 0.92233 0.97716 1.01177
1.21427 0.98138 0.99841 0.94754 1.21328 0.98755 0.98666 0.93467
1.71888 1.26016 1.25498 1.17340 1.82215 1.01220 1.57669 0.94509
0.92120 0.92374 0.91710 0.95030 0.89507 0.87900 0.92930 0.90660
0.81200 0.85407 0.83039 0.82625 0.83231 0.85979
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.90 9.79 71.98 0.70 -3.20 16
2 C -0.13 -4.95 4.67 30.59 0.14 -4.80 16
3 C 0.12 5.01 4.12 86.38 0.36 5.37 16
4 N -0.42 -21.71 2.64 -639.73 -1.69 -23.40 16
5 C -0.34 -18.72 9.37 84.11 0.79 -17.94 16
6 H 0.08 4.71 7.35 -2.91 -0.02 4.69 16
7 C 0.01 0.57 4.95 84.96 0.42 0.99 16
8 N -0.85 -39.36 8.40 21.68 0.18 -39.18 16
9 Si 0.99 39.02 29.60 68.60 2.03 41.05 16
10 H -0.28 -11.42 7.11 99.48 0.71 -10.72 16
11 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16
12 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16
13 C 0.48 25.40 7.55 86.54 0.65 26.05 16
14 O -0.63 -37.63 16.60 -4.25 -0.07 -37.70 16
15 C -0.26 -11.24 6.26 24.56 0.15 -11.09 16
16 C -0.14 -5.37 9.63 22.34 0.22 -5.15 16
17 C 0.12 4.41 6.58 42.15 0.28 4.69 16
18 C -0.05 -1.45 5.88 -20.04 -0.12 -1.57 16
19 C -0.11 -2.87 9.45 22.48 0.21 -2.66 16
20 C -0.12 -2.30 10.03 22.24 0.22 -2.08 16
21 C -0.11 -1.81 10.04 22.31 0.22 -1.59 16
22 C -0.12 -2.37 10.03 22.24 0.22 -2.15 16
23 C -0.10 -2.65 9.60 22.48 0.22 -2.44 16
24 N -0.58 -20.60 10.50 -72.87 -0.76 -21.36 16
25 S 0.48 17.19 15.33 -56.49 -0.87 16.33 16
26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16
27 H 0.06 1.52 7.25 -2.38 -0.02 1.51 16
28 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16
29 H 0.03 1.24 6.05 -4.14 -0.03 1.22 16
30 H 0.09 3.91 6.06 -2.39 -0.01 3.89 16
31 H 0.10 4.56 6.07 -2.39 -0.01 4.54 16
32 H 0.05 2.05 4.61 -19.56 -0.09 1.96 16
33 H 0.28 11.98 8.31 -92.71 -0.77 11.21 16
34 H 0.17 6.27 6.66 -2.91 -0.02 6.26 16
35 H 0.13 3.15 6.46 -2.91 -0.02 3.13 16
36 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16
37 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16
38 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16
39 H 0.12 3.26 7.62 -2.91 -0.02 3.24 16
Total: -1.00 -65.16 329.21 4.51 -60.65
By element:
Atomic # 1 Polarization: 20.18 SS G_CDS: 1.00 Total: 21.17 kcal
Atomic # 6 Polarization: -22.24 SS G_CDS: 4.69 Total: -17.55 kcal
Atomic # 7 Polarization: -81.67 SS G_CDS: -2.27 Total: -83.94 kcal
Atomic # 8 Polarization: -37.63 SS G_CDS: -0.07 Total: -37.70 kcal
Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.05 kcal
Atomic # 16 Polarization: 17.19 SS G_CDS: -0.87 Total: 16.33 kcal
Total: -65.16 4.51 -60.65 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000359967627.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.641 kcal
(2) G-P(sol) polarization free energy of solvation -65.163 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.649 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds