Wall clock time and date at job start Tue Mar 31 2020 11:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28439 * 125.20261 * 2 1 4 4 C 1.30904 * 110.96624 * 180.02562 * 3 2 1 5 5 N 1.48013 * 126.05057 * 180.02562 * 4 3 2 6 6 O 1.31698 * 120.00221 * 359.97438 * 5 4 3 7 7 O 1.31708 * 120.00019 * 179.97438 * 5 4 3 8 8 C 1.39602 * 107.89722 * 359.97438 * 4 3 2 9 9 C 1.36700 * 125.19993 * 180.02562 * 2 1 3 10 10 C 1.46907 * 126.90241 * 359.73725 * 9 2 1 11 11 O 1.21555 * 120.00002 * 353.99167 * 10 9 2 12 12 N 1.34775 * 119.99586 * 173.98868 * 10 9 2 13 13 C 1.33380 * 120.00222 * 5.82151 * 12 10 9 14 14 H 1.08001 * 120.00595 * 296.90140 * 13 12 10 15 15 C 1.46633 * 119.99908 * 116.90227 * 13 12 10 16 16 N 1.29389 * 119.99622 * 4.49894 * 15 13 12 17 17 Si 1.86797 * 120.00113 * 184.49634 * 15 13 12 18 18 H 1.48505 * 109.47141 * 60.00335 * 17 15 13 19 19 H 1.48503 * 109.47233 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47344 * 300.00248 * 17 15 13 21 21 C 1.39621 * 119.99595 * 185.82375 * 12 10 9 22 22 C 1.39010 * 120.08439 * 7.49308 * 21 12 10 23 23 C 1.38071 * 119.91818 * 179.74475 * 22 21 12 24 24 C 1.38317 * 120.08041 * 0.52342 * 23 22 21 25 25 C 1.38327 * 120.16574 * 359.72752 * 24 23 22 26 26 C 1.38069 * 120.08169 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46843 * 274.73966 * 1 2 3 28 28 H 1.09002 * 109.47202 * 34.73508 * 1 2 3 29 29 H 1.09000 * 109.47309 * 154.74131 * 1 2 3 30 30 H 1.08002 * 127.32219 * 180.02562 * 8 4 3 31 31 H 0.97006 * 119.99569 * 185.00450 * 16 15 13 32 32 H 1.08002 * 120.04190 * 359.96914 * 22 21 12 33 33 H 1.08000 * 119.95809 * 180.25183 * 23 22 21 34 34 H 1.07998 * 119.92197 * 179.70010 * 24 23 22 35 35 H 1.08004 * 119.95788 * 179.97438 * 25 24 23 36 36 H 1.08003 * 120.03889 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0495 0.0000 4 6 3.4743 0.7276 -0.0005 5 7 4.6129 1.6733 -0.0002 6 8 4.3907 2.9714 0.0003 7 8 5.8483 1.2166 -0.0003 8 6 3.5634 -0.6656 -0.0003 9 6 2.2530 -1.1170 -0.0005 10 6 1.8015 -2.5150 0.0043 11 8 0.6189 -2.7714 0.1194 12 7 2.6987 -3.5132 -0.1191 13 6 4.0040 -3.2394 -0.1288 14 1 4.4232 -2.6347 -0.9194 15 6 4.8700 -3.7593 0.9341 16 7 4.3854 -4.5546 1.8324 17 14 6.6728 -3.2734 0.9914 18 1 6.7841 -1.7988 1.1272 19 1 7.3251 -3.9277 2.1541 20 1 7.3424 -3.7070 -0.2611 21 6 2.2615 -4.8340 -0.2370 22 6 0.9069 -5.1091 -0.3838 23 6 0.4789 -6.4162 -0.5053 24 6 1.3951 -7.4518 -0.4702 25 6 2.7434 -7.1822 -0.3190 26 6 3.1794 -5.8774 -0.2020 27 1 -0.3633 0.0849 1.0242 28 1 -0.3634 0.8445 -0.5856 29 1 -0.3634 -0.9294 -0.4385 30 1 4.4623 -1.2642 -0.0003 31 1 4.9386 -4.8407 2.5761 32 1 0.1904 -4.3013 -0.4065 33 1 -0.5730 -6.6305 -0.6235 34 1 1.0570 -8.4735 -0.5606 35 1 3.4558 -7.9935 -0.2916 36 1 4.2322 -5.6677 -0.0835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361843684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:05 Heat of formation + Delta-G solvation = 144.701806 kcal Electronic energy + Delta-G solvation = -26414.832903 eV Core-core repulsion = 22486.700054 eV Total energy + Delta-G solvation = -3928.132849 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.93287 -39.98776 -38.46909 -37.40390 -35.59303 -34.15826 -33.52706 -32.57222 -31.39872 -29.89471 -28.79698 -28.56292 -25.80600 -25.12559 -23.47605 -22.25413 -21.33912 -20.74667 -19.98752 -18.79209 -17.79598 -17.02626 -16.79647 -16.53150 -16.19097 -15.90124 -15.43125 -15.40047 -14.75573 -14.29292 -13.78441 -13.68239 -13.25721 -13.09720 -12.90087 -12.64954 -12.52078 -12.23920 -11.90154 -11.59589 -11.40518 -11.15713 -11.06039 -11.02308 -10.86080 -10.65801 -10.46687 -10.25032 -9.60723 -9.30960 -9.18194 -9.06370 -8.74253 -8.00517 -7.24870 -6.64335 -4.80221 -0.26938 0.93568 1.25177 2.20738 2.35109 2.38678 2.46300 2.95144 3.00469 3.05695 3.63865 3.79187 3.95638 4.25380 4.36909 4.87239 4.89398 5.04052 5.13311 5.34762 5.39955 5.52098 5.69223 5.82361 5.96100 5.98674 6.27246 6.44655 6.49483 6.54009 6.64805 6.80506 6.90287 6.93202 7.28815 7.36802 7.45665 7.51446 7.60214 7.79087 8.09291 8.29936 8.82309 9.34172 10.02143 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.005824 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.880153 B = 4806.424693 C = 6623.106557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.219 5.219 3 N -0.214 5.214 4 C 0.087 3.913 5 N 0.026 4.974 6 O -0.165 6.165 7 O -0.157 6.157 8 C -0.094 4.094 9 C 0.009 3.991 10 C 0.550 3.450 11 O -0.565 6.565 12 N -0.332 5.332 13 C -0.441 4.441 14 H 0.105 0.895 15 C 0.075 3.925 16 N -0.797 5.797 17 Si 0.899 3.101 18 H -0.247 1.247 19 H -0.276 1.276 20 H -0.258 1.258 21 C 0.168 3.832 22 C -0.178 4.178 23 C -0.123 4.123 24 C -0.163 4.163 25 C -0.125 4.125 26 C -0.088 4.088 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.126 0.874 30 H 0.217 0.783 31 H 0.288 0.712 32 H 0.166 0.834 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 0.565 -2.527 4.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.015 5.015 3 N -0.061 5.061 4 C -0.149 4.149 5 N 0.506 4.494 6 O -0.358 6.358 7 O -0.347 6.347 8 C -0.123 4.123 9 C -0.117 4.117 10 C 0.342 3.658 11 O -0.451 6.451 12 N -0.036 5.036 13 C -0.568 4.568 14 H 0.122 0.878 15 C -0.146 4.146 16 N -0.423 5.423 17 Si 0.722 3.278 18 H -0.170 1.170 19 H -0.201 1.201 20 H -0.183 1.183 21 C 0.073 3.927 22 C -0.198 4.198 23 C -0.141 4.141 24 C -0.182 4.182 25 C -0.144 4.144 26 C -0.109 4.109 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.234 0.766 31 H 0.100 0.900 32 H 0.183 0.817 33 H 0.125 0.875 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.871 0.811 -2.285 6.352 hybrid contribution 1.752 -0.218 0.411 1.813 sum -4.119 0.593 -1.874 4.564 Atomic orbital electron populations 1.22678 0.70527 1.07033 1.05601 1.45900 1.08437 1.01287 1.45896 1.72827 1.01619 1.14463 1.17180 1.21315 0.85462 0.88304 1.19820 1.49055 1.02166 1.02207 0.95985 1.96269 1.93041 0.91557 1.54970 1.96322 0.99535 1.83302 1.55501 1.23556 1.00347 0.88992 0.99396 1.21592 0.89188 0.90373 1.10529 1.17286 0.85627 0.82826 0.80106 1.90360 1.17424 1.82848 1.54468 1.39239 1.06079 1.01909 1.56367 1.20101 0.82162 1.42075 1.12455 0.87801 1.27296 1.00787 0.92556 0.93932 1.69004 1.39650 1.23988 1.09674 0.86398 0.80736 0.81444 0.79270 1.17048 1.20086 1.18257 1.18414 0.92440 0.85133 0.96738 1.22425 0.96097 0.98295 1.02942 1.20852 0.98331 0.92891 1.02074 1.20873 0.93723 0.97999 1.05618 1.20828 0.95249 0.96115 1.02218 1.21047 1.00886 0.90457 0.98476 0.88706 0.88411 0.85578 0.76638 0.89998 0.81701 0.87491 0.87895 0.87436 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.90 59.85 0.65 1.59 16 2 N -0.22 -3.61 3.75 -63.88 -0.24 -3.85 16 3 N -0.21 -3.83 11.89 32.97 0.39 -3.44 16 4 C 0.09 1.66 8.23 -146.46 -1.20 0.46 16 5 N 0.03 0.52 4.98 32.98 0.16 0.68 16 6 O -0.17 -3.25 19.96 -31.57 -0.63 -3.88 16 7 O -0.16 -3.13 19.78 -31.57 -0.62 -3.76 16 8 C -0.09 -1.82 9.09 -38.94 -0.35 -2.18 16 9 C 0.01 0.17 6.86 -82.05 -0.56 -0.40 16 10 C 0.55 11.54 7.49 -12.75 -0.10 11.44 16 11 O -0.57 -11.71 11.16 5.32 0.06 -11.65 16 12 N -0.33 -7.38 2.56 -58.89 -0.15 -7.54 16 13 C -0.44 -9.59 5.54 -13.49 -0.07 -9.66 16 14 H 0.10 2.17 6.34 -52.49 -0.33 1.84 16 15 C 0.08 1.62 4.24 -15.19 -0.06 1.56 16 16 N -0.80 -18.24 11.16 55.99 0.62 -17.62 16 17 Si 0.90 16.84 29.15 -169.99 -4.96 11.88 16 18 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 19 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 20 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 21 C 0.17 3.73 6.10 -83.74 -0.51 3.22 16 22 C -0.18 -3.69 8.98 -39.36 -0.35 -4.05 16 23 C -0.12 -2.24 10.04 -39.61 -0.40 -2.64 16 24 C -0.16 -2.87 10.04 -39.52 -0.40 -3.26 16 25 C -0.13 -2.35 10.04 -39.61 -0.40 -2.75 16 26 C -0.09 -1.89 7.88 -39.36 -0.31 -2.20 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.13 1.53 6.20 -51.93 -0.32 1.21 16 30 H 0.22 4.25 4.43 -52.49 -0.23 4.02 16 31 H 0.29 6.19 8.27 -40.82 -0.34 5.85 16 32 H 0.17 3.45 4.71 -55.30 -0.26 3.19 16 33 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.14 3.04 5.25 -52.48 -0.28 2.77 16 LS Contribution 316.80 15.07 4.77 4.77 Total: -1.00 -25.86 316.80 -7.33 -33.19 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -2.67 Total: 10.06 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: -4.07 Total: -8.86 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.79 Total: -31.76 kcal Atomic # 8 Polarization: -18.09 SS G_CDS: -1.20 Total: -19.28 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -4.96 Total: 11.88 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -25.86 -7.33 -33.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361843684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.890 kcal (2) G-P(sol) polarization free energy of solvation -25.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds