Wall clock time and date at job start Tue Mar 31 2020 11:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 N 1.28439 * 125.20261 * 2 1 4 4 C 1.30904 * 110.96624 * 180.02562 * 3 2 1 5 5 N 1.48013 * 126.05057 * 180.02562 * 4 3 2 6 6 O 1.31698 * 120.00221 * 359.97438 * 5 4 3 7 7 O 1.31708 * 120.00019 * 179.97438 * 5 4 3 8 8 C 1.39602 * 107.89722 * 359.97438 * 4 3 2 9 9 C 1.36700 * 125.19993 * 180.02562 * 2 1 3 10 10 C 1.46907 * 126.90241 * 359.73725 * 9 2 1 11 11 O 1.21555 * 120.00002 * 353.99167 * 10 9 2 12 12 N 1.34775 * 119.99586 * 173.98868 * 10 9 2 13 13 C 1.33380 * 120.00222 * 5.82151 * 12 10 9 14 14 H 1.08001 * 120.00595 * 296.90140 * 13 12 10 15 15 C 1.46633 * 119.99908 * 116.90227 * 13 12 10 16 16 N 1.29389 * 119.99622 * 4.49894 * 15 13 12 17 17 Si 1.86797 * 120.00113 * 184.49634 * 15 13 12 18 18 H 1.48505 * 109.47141 * 60.00335 * 17 15 13 19 19 H 1.48503 * 109.47233 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47344 * 300.00248 * 17 15 13 21 21 C 1.39621 * 119.99595 * 185.82375 * 12 10 9 22 22 C 1.39010 * 120.08439 * 7.49308 * 21 12 10 23 23 C 1.38071 * 119.91818 * 179.74475 * 22 21 12 24 24 C 1.38317 * 120.08041 * 0.52342 * 23 22 21 25 25 C 1.38327 * 120.16574 * 359.72752 * 24 23 22 26 26 C 1.38069 * 120.08169 * 0.02562 * 25 24 23 27 27 H 1.09003 * 109.46843 * 274.73966 * 1 2 3 28 28 H 1.09002 * 109.47202 * 34.73508 * 1 2 3 29 29 H 1.09000 * 109.47309 * 154.74131 * 1 2 3 30 30 H 1.08002 * 127.32219 * 180.02562 * 8 4 3 31 31 H 0.97006 * 119.99569 * 185.00450 * 16 15 13 32 32 H 1.08002 * 120.04190 * 359.96914 * 22 21 12 33 33 H 1.08000 * 119.95809 * 180.25183 * 23 22 21 34 34 H 1.07998 * 119.92197 * 179.70010 * 24 23 22 35 35 H 1.08004 * 119.95788 * 179.97438 * 25 24 23 36 36 H 1.08003 * 120.03889 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2054 1.0495 0.0000 4 6 3.4743 0.7276 -0.0005 5 7 4.6129 1.6733 -0.0002 6 8 4.3907 2.9714 0.0003 7 8 5.8483 1.2166 -0.0003 8 6 3.5634 -0.6656 -0.0003 9 6 2.2530 -1.1170 -0.0005 10 6 1.8015 -2.5150 0.0043 11 8 0.6189 -2.7714 0.1194 12 7 2.6987 -3.5132 -0.1191 13 6 4.0040 -3.2394 -0.1288 14 1 4.4232 -2.6347 -0.9194 15 6 4.8700 -3.7593 0.9341 16 7 4.3854 -4.5546 1.8324 17 14 6.6728 -3.2734 0.9914 18 1 6.7841 -1.7988 1.1272 19 1 7.3251 -3.9277 2.1541 20 1 7.3424 -3.7070 -0.2611 21 6 2.2615 -4.8340 -0.2370 22 6 0.9069 -5.1091 -0.3838 23 6 0.4789 -6.4162 -0.5053 24 6 1.3951 -7.4518 -0.4702 25 6 2.7434 -7.1822 -0.3190 26 6 3.1794 -5.8774 -0.2020 27 1 -0.3633 0.0849 1.0242 28 1 -0.3634 0.8445 -0.5856 29 1 -0.3634 -0.9294 -0.4385 30 1 4.4623 -1.2642 -0.0003 31 1 4.9386 -4.8407 2.5761 32 1 0.1904 -4.3013 -0.4065 33 1 -0.5730 -6.6305 -0.6235 34 1 1.0570 -8.4735 -0.5606 35 1 3.4558 -7.9935 -0.2916 36 1 4.2322 -5.6677 -0.0835 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361843684.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:04 Heat of formation + Delta-G solvation = 132.706564 kcal Electronic energy + Delta-G solvation = -26415.353056 eV Core-core repulsion = 22486.700054 eV Total energy + Delta-G solvation = -3928.653002 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.100 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.37768 -41.56193 -40.00623 -38.92407 -37.16764 -35.70958 -34.87559 -34.21662 -32.88896 -31.39731 -30.28738 -29.91777 -27.35616 -26.56810 -24.98767 -23.74922 -22.84878 -22.23471 -21.51783 -20.37337 -19.33739 -18.53363 -18.22353 -18.00166 -17.69226 -17.44591 -16.93400 -16.88532 -16.30237 -15.85338 -15.24993 -15.10982 -14.75881 -14.62844 -14.13776 -13.97191 -13.83833 -13.70159 -13.38596 -13.14117 -12.90872 -12.70937 -12.56594 -12.50512 -12.39361 -12.15738 -12.03451 -11.74500 -11.00508 -10.89476 -10.71859 -10.61217 -10.30582 -9.51748 -8.86955 -8.24772 -6.47752 -1.80701 -0.54199 -0.24392 0.70453 0.82963 0.94791 1.04542 1.43173 1.48821 1.52059 2.08677 2.24241 2.44979 2.70315 2.84582 3.33216 3.36771 3.81328 3.88243 4.16880 4.21076 4.34703 4.37594 4.46391 4.57028 4.61181 4.85959 4.92098 4.98020 5.04309 5.09028 5.19221 5.40813 5.43621 5.79691 5.86112 5.90123 5.99226 6.13233 6.16401 6.53288 6.65123 7.21752 7.71358 8.38869 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.005824 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.880153 B = 4806.424693 C = 6623.106557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.199 5.199 3 N -0.202 5.202 4 C 0.071 3.929 5 N 0.028 4.972 6 O -0.161 6.161 7 O -0.176 6.176 8 C -0.095 4.095 9 C -0.004 4.004 10 C 0.545 3.455 11 O -0.568 6.568 12 N -0.345 5.345 13 C -0.447 4.447 14 H 0.105 0.895 15 C 0.051 3.949 16 N -0.826 5.826 17 Si 0.949 3.051 18 H -0.252 1.252 19 H -0.275 1.275 20 H -0.253 1.253 21 C 0.138 3.862 22 C -0.196 4.196 23 C -0.121 4.121 24 C -0.156 4.156 25 C -0.128 4.128 26 C -0.110 4.110 27 H 0.115 0.885 28 H 0.133 0.867 29 H 0.122 0.878 30 H 0.210 0.790 31 H 0.288 0.712 32 H 0.161 0.839 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.395 0.078 -2.784 6.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N 0.003 4.997 3 N -0.051 5.051 4 C -0.163 4.163 5 N 0.505 4.495 6 O -0.356 6.356 7 O -0.361 6.361 8 C -0.124 4.124 9 C -0.130 4.130 10 C 0.336 3.664 11 O -0.454 6.454 12 N -0.050 5.050 13 C -0.574 4.574 14 H 0.122 0.878 15 C -0.166 4.166 16 N -0.453 5.453 17 Si 0.769 3.231 18 H -0.176 1.176 19 H -0.200 1.200 20 H -0.177 1.177 21 C 0.043 3.957 22 C -0.216 4.216 23 C -0.140 4.140 24 C -0.175 4.175 25 C -0.147 4.147 26 C -0.130 4.130 27 H 0.133 0.867 28 H 0.151 0.849 29 H 0.141 0.859 30 H 0.226 0.774 31 H 0.100 0.900 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.081 0.302 -2.552 7.533 hybrid contribution 1.952 -0.102 0.455 2.007 sum -5.129 0.200 -2.097 5.545 Atomic orbital electron populations 1.23147 0.67664 1.08440 1.07605 1.46375 1.09761 1.00130 1.43424 1.72853 1.01109 1.14531 1.16603 1.21276 0.85724 0.88034 1.21268 1.49093 1.02313 1.02255 0.95816 1.96251 1.93027 0.91741 1.54617 1.96321 0.99814 1.83303 1.56705 1.23446 1.00457 0.89213 0.99276 1.21365 0.89596 0.90331 1.11666 1.17427 0.85605 0.83345 0.79987 1.90342 1.17298 1.83150 1.54631 1.39416 1.06343 1.02368 1.56858 1.20249 0.82484 1.42001 1.12661 0.87760 1.27797 1.03184 0.92197 0.93473 1.69074 1.40739 1.25119 1.10327 0.85662 0.77498 0.80607 0.79292 1.17603 1.19974 1.17721 1.18744 0.93415 0.85397 0.98139 1.22512 0.95420 0.99565 1.04062 1.21238 1.00200 0.91970 1.00559 1.21282 0.92910 0.99704 1.03608 1.21167 0.96668 0.95655 1.01161 1.21058 1.00114 0.91696 1.00158 0.86663 0.84869 0.85938 0.77393 0.89959 0.82266 0.84373 0.84122 0.85070 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 10.90 127.77 1.39 2.82 16 2 N -0.20 -6.28 3.75 -356.03 -1.34 -7.62 16 3 N -0.20 -6.93 11.89 -49.60 -0.59 -7.52 16 4 C 0.07 2.70 8.23 130.25 1.07 3.77 16 5 N 0.03 1.09 4.98 -49.57 -0.25 0.84 16 6 O -0.16 -6.20 19.96 3.52 0.07 -6.13 16 7 O -0.18 -7.08 19.78 3.50 0.07 -7.01 16 8 C -0.10 -3.70 9.09 22.69 0.21 -3.49 16 9 C 0.00 -0.14 6.86 40.74 0.28 0.14 16 10 C 0.54 23.04 7.49 86.51 0.65 23.69 16 11 O -0.57 -23.49 11.16 -3.89 -0.04 -23.53 16 12 N -0.35 -15.66 2.56 -458.49 -1.18 -16.84 16 13 C -0.45 -19.92 5.54 86.65 0.48 -19.44 16 14 H 0.11 4.51 6.34 -2.91 -0.02 4.49 16 15 C 0.05 2.26 4.24 87.25 0.37 2.63 16 16 N -0.83 -38.54 11.16 23.23 0.26 -38.28 16 17 Si 0.95 35.10 29.15 68.60 2.00 37.10 16 18 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 19 H -0.28 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.25 -9.08 7.11 99.48 0.71 -8.37 16 21 C 0.14 6.19 6.10 38.27 0.23 6.43 16 22 C -0.20 -8.04 8.98 22.42 0.20 -7.84 16 23 C -0.12 -4.15 10.04 22.25 0.22 -3.93 16 24 C -0.16 -5.04 10.04 22.31 0.22 -4.82 16 25 C -0.13 -4.60 10.04 22.25 0.22 -4.38 16 26 C -0.11 -4.73 7.88 22.41 0.18 -4.56 16 27 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.12 2.77 6.20 -2.39 -0.01 2.75 16 30 H 0.21 8.40 4.43 -2.91 -0.01 8.38 16 31 H 0.29 12.67 8.27 -92.70 -0.77 11.90 16 32 H 0.16 6.64 4.71 -47.41 -0.22 6.41 16 33 H 0.14 3.79 8.06 -2.91 -0.02 3.76 16 34 H 0.14 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 36 H 0.12 5.48 5.25 -2.91 -0.02 5.47 16 Total: -1.00 -55.68 316.80 5.70 -49.98 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: 0.96 Total: 27.98 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 5.73 Total: -8.98 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -3.09 Total: -69.41 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: 0.10 Total: -36.67 kcal Atomic # 14 Polarization: 35.10 SS G_CDS: 2.00 Total: 37.10 kcal Total: -55.68 5.70 -49.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361843684.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.689 kcal (2) G-P(sol) polarization free energy of solvation -55.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds