Wall clock time and date at job start Tue Mar 31 2020 11:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99818 * 2 1 4 4 C 1.50701 * 109.46984 * 270.00050 * 3 2 1 5 5 H 1.07992 * 120.00109 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00034 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99597 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00208 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47324 * 59.99999 * 8 6 4 10 10 H 1.48498 * 109.46996 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47010 * 299.99773 * 8 6 4 12 12 C 1.34770 * 120.00340 * 180.02562 * 2 1 3 13 13 O 1.21584 * 120.00183 * 180.02562 * 12 2 1 14 14 N 1.34783 * 119.99830 * 359.97438 * 12 2 1 15 15 C 1.39817 * 119.99728 * 174.21531 * 14 12 2 16 16 C 1.38645 * 120.14406 * 335.14454 * 15 14 12 17 17 C 1.38207 * 120.07321 * 179.97438 * 16 15 14 18 18 C 1.38414 * 120.35628 * 0.02562 * 17 16 15 19 19 C 1.37976 * 120.28949 * 359.97438 * 18 17 16 20 20 C 1.39495 * 119.92077 * 359.69876 * 19 18 17 21 21 C 1.47780 * 120.18139 * 180.27287 * 20 19 18 22 22 C 1.34813 * 125.27232 * 310.30946 * 21 20 19 23 23 C 1.38008 * 114.68632 * 179.97438 * 22 21 20 24 24 C 1.33575 * 115.07019 * 359.97438 * 23 22 21 25 25 S 1.75863 * 109.77019 * 359.77239 * 24 23 22 26 26 H 1.09000 * 109.47244 * 270.00177 * 1 2 3 27 27 H 1.09003 * 109.47477 * 29.99832 * 1 2 3 28 28 H 1.09004 * 109.46961 * 150.00098 * 1 2 3 29 29 H 1.09005 * 109.47138 * 29.99985 * 3 2 1 30 30 H 1.09000 * 109.47254 * 149.99944 * 3 2 1 31 31 H 0.97008 * 119.99750 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99632 * 354.48666 * 14 12 2 33 33 H 1.08007 * 119.96173 * 359.95920 * 16 15 14 34 34 H 1.07996 * 119.81636 * 179.97438 * 17 16 15 35 35 H 1.08008 * 119.85512 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.03995 * 179.97438 * 19 18 17 37 37 H 1.07995 * 122.65124 * 359.97438 * 22 21 20 38 38 H 1.08005 * 122.45712 * 180.02562 * 23 22 21 39 39 H 1.07999 * 125.11372 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6731 8 14 3.4375 3.4171 -3.4340 9 1 2.1397 3.5955 -4.1333 10 1 4.1800 4.7031 -3.4339 11 1 4.2392 2.3821 -4.1347 12 6 2.1389 -1.1671 -0.0005 13 8 3.3548 -1.1671 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1588 -3.5421 -0.1231 16 6 3.3998 -3.5725 -0.7406 17 6 4.0846 -4.7670 -0.8605 18 6 3.5382 -5.9391 -0.3670 19 6 2.3043 -5.9259 0.2502 20 6 1.6059 -4.7257 0.3837 21 6 0.2865 -4.7039 1.0491 22 6 -0.7406 -5.5309 0.7686 23 6 -1.8750 -5.3181 1.5252 24 6 -1.7827 -4.3286 2.4177 25 16 -0.1841 -3.6004 2.3354 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6083 2.0285 0.5139 30 1 3.1499 1.1385 0.5138 31 1 4.0316 4.4432 -0.8504 32 1 0.4984 -2.3363 0.0806 33 1 3.8318 -2.6618 -1.1285 34 1 5.0508 -4.7861 -1.3426 35 1 4.0802 -6.8682 -0.4654 36 1 1.8816 -6.8429 0.6334 37 1 -0.6803 -6.2990 0.0119 38 1 -2.7712 -5.9089 1.4049 39 1 -2.5703 -4.0240 3.0910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426570074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:54 Heat of formation + Delta-G solvation = 44.815727 kcal Electronic energy + Delta-G solvation = -23495.719488 eV Core-core repulsion = 20109.548468 eV Total energy + Delta-G solvation = -3386.171020 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.40901 -38.67536 -37.48228 -35.06257 -34.44992 -32.57314 -32.02197 -29.60420 -28.20427 -27.57509 -25.81303 -24.46747 -23.45158 -22.29185 -21.57929 -19.42957 -19.20081 -18.31432 -17.32374 -16.84177 -16.54853 -15.85245 -15.27147 -15.04858 -14.79342 -14.49764 -13.99190 -13.74575 -13.50669 -13.24356 -13.05469 -12.87875 -12.73929 -12.60005 -12.20974 -12.10646 -11.91881 -11.53608 -11.27909 -11.20292 -10.93426 -10.85686 -10.57996 -10.25698 -10.13217 -9.68813 -9.32169 -9.22766 -8.63320 -8.44193 -8.36789 -7.90569 -7.54964 -6.05199 -4.10157 0.58635 1.23918 1.55303 1.73712 1.97039 2.62255 3.13285 3.31699 3.36142 3.39774 3.66042 4.09849 4.37305 4.50408 4.55102 4.90466 4.98301 5.15842 5.28001 5.28834 5.39889 5.45389 5.48487 5.62899 5.72001 5.83465 5.89949 6.03244 6.09583 6.17942 6.28793 6.42109 6.46099 6.66219 6.77582 6.81542 7.24694 7.32463 7.46565 7.62415 7.91982 8.21121 8.50692 8.89836 9.16618 9.55079 11.02651 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.003962 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.765972 B = 7065.296679 C = 8266.937248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.609 5.609 3 C 0.260 3.740 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.697 3.303 13 O -0.564 6.564 14 N -0.691 5.691 15 C 0.203 3.797 16 C -0.132 4.132 17 C -0.088 4.088 18 C -0.152 4.152 19 C -0.076 4.076 20 C -0.079 4.079 21 C -0.132 4.132 22 C -0.132 4.132 23 C -0.133 4.133 24 C -0.224 4.224 25 S 0.120 5.880 26 H 0.047 0.953 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.402 0.598 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.168 -19.262 4.229 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.399 3.601 13 O -0.440 6.440 14 N -0.339 5.339 15 C 0.104 3.896 16 C -0.153 4.153 17 C -0.107 4.107 18 C -0.172 4.172 19 C -0.096 4.096 20 C -0.084 4.084 21 C -0.249 4.249 22 C -0.162 4.162 23 C -0.164 4.164 24 C -0.360 4.360 25 S 0.387 5.613 26 H 0.066 0.934 27 H 0.100 0.900 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.239 0.761 33 H 0.174 0.826 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.563 -17.680 5.102 20.296 hybrid contribution -1.206 -0.748 -1.613 2.149 sum -9.769 -18.428 3.489 21.147 Atomic orbital electron populations 1.21629 0.81632 1.02470 1.00582 1.47518 1.05768 1.06300 1.74758 1.19277 0.92399 0.76712 0.97569 1.21402 1.36687 1.06342 0.92282 0.92512 1.24919 0.95305 0.96327 0.97429 1.69925 1.38243 1.14386 1.30779 0.86553 0.78349 0.77828 0.84650 1.20290 1.21160 1.20171 1.15920 0.85538 0.79998 0.78627 1.90855 1.11235 1.85411 1.56512 1.43157 1.10365 1.03963 1.76431 1.17657 0.92976 0.83985 0.94986 1.21588 0.94262 1.00055 0.99363 1.21181 0.99511 0.91897 0.98133 1.20947 0.96091 0.98329 1.01796 1.20884 0.94384 0.95841 0.98508 1.17655 0.93660 0.93391 1.03706 1.22907 0.97670 1.02304 1.02011 1.20367 0.92103 1.01426 1.02352 1.20061 0.99619 0.99404 0.97291 1.25792 1.01134 1.02941 1.06084 1.84803 1.07052 1.35566 1.33923 0.93441 0.90048 0.93298 0.94681 0.93569 0.92625 0.76062 0.82589 0.85716 0.86028 0.85839 0.84136 0.84305 0.81898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.31 10.16 59.85 0.61 1.92 16 2 N -0.61 -13.07 2.86 -188.73 -0.54 -13.61 16 3 C 0.26 6.76 5.16 -5.19 -0.03 6.73 16 4 C -0.53 -14.88 9.39 -34.44 -0.32 -15.21 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 8 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 12 C 0.70 15.07 8.08 -86.92 -0.70 14.37 16 13 O -0.56 -14.24 13.10 5.29 0.07 -14.18 16 14 N -0.69 -11.99 4.55 -14.00 -0.06 -12.05 16 15 C 0.20 3.37 6.44 -83.36 -0.54 2.84 16 16 C -0.13 -2.26 8.71 -39.44 -0.34 -2.61 16 17 C -0.09 -1.20 10.03 -39.53 -0.40 -1.60 16 18 C -0.15 -1.78 10.03 -39.61 -0.40 -2.18 16 19 C -0.08 -0.90 9.67 -39.21 -0.38 -1.28 16 20 C -0.08 -1.09 5.76 -104.82 -0.60 -1.70 16 21 C -0.13 -1.63 5.22 -36.90 -0.19 -1.82 16 22 C -0.13 -1.36 9.97 -40.88 -0.41 -1.77 16 23 C -0.13 -1.21 10.16 -41.30 -0.42 -1.63 16 24 C -0.22 -2.11 11.22 29.10 0.33 -1.78 16 25 S 0.12 1.43 21.80 -107.50 -2.34 -0.91 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 28 H 0.05 0.67 6.45 -51.93 -0.33 0.34 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.40 6.05 4.87 -40.82 -0.20 5.85 16 33 H 0.16 3.15 5.80 -52.48 -0.30 2.84 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.16 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -32.63 345.18 -10.42 -43.05 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.57 Total: 5.45 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -3.89 Total: -4.05 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.13 Total: -51.33 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.07 Total: -14.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 1.43 SS G_CDS: -2.34 Total: -0.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.63 -10.42 -43.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426570074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.865 kcal (2) G-P(sol) polarization free energy of solvation -32.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds