Wall clock time and date at job start Tue Mar 31 2020 11:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46504 * 119.99818 * 2 1 4 4 C 1.50701 * 109.46984 * 270.00050 * 3 2 1 5 5 H 1.07992 * 120.00109 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00034 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99597 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 120.00208 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47324 * 59.99999 * 8 6 4 10 10 H 1.48498 * 109.46996 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47010 * 299.99773 * 8 6 4 12 12 C 1.34770 * 120.00340 * 180.02562 * 2 1 3 13 13 O 1.21584 * 120.00183 * 180.02562 * 12 2 1 14 14 N 1.34783 * 119.99830 * 359.97438 * 12 2 1 15 15 C 1.39817 * 119.99728 * 174.21531 * 14 12 2 16 16 C 1.38645 * 120.14406 * 335.14454 * 15 14 12 17 17 C 1.38207 * 120.07321 * 179.97438 * 16 15 14 18 18 C 1.38414 * 120.35628 * 0.02562 * 17 16 15 19 19 C 1.37976 * 120.28949 * 359.97438 * 18 17 16 20 20 C 1.39495 * 119.92077 * 359.69876 * 19 18 17 21 21 C 1.47780 * 120.18139 * 180.27287 * 20 19 18 22 22 C 1.34813 * 125.27232 * 310.30946 * 21 20 19 23 23 C 1.38008 * 114.68632 * 179.97438 * 22 21 20 24 24 C 1.33575 * 115.07019 * 359.97438 * 23 22 21 25 25 S 1.75863 * 109.77019 * 359.77239 * 24 23 22 26 26 H 1.09000 * 109.47244 * 270.00177 * 1 2 3 27 27 H 1.09003 * 109.47477 * 29.99832 * 1 2 3 28 28 H 1.09004 * 109.46961 * 150.00098 * 1 2 3 29 29 H 1.09005 * 109.47138 * 29.99985 * 3 2 1 30 30 H 1.09000 * 109.47254 * 149.99944 * 3 2 1 31 31 H 0.97008 * 119.99750 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99632 * 354.48666 * 14 12 2 33 33 H 1.08007 * 119.96173 * 359.95920 * 16 15 14 34 34 H 1.07996 * 119.81636 * 179.97438 * 17 16 15 35 35 H 1.08008 * 119.85512 * 179.97438 * 18 17 16 36 36 H 1.08002 * 120.03995 * 179.97438 * 19 18 17 37 37 H 1.07995 * 122.65124 * 359.97438 * 22 21 20 38 38 H 1.08005 * 122.45712 * 180.02562 * 23 22 21 39 39 H 1.07999 * 125.11372 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6731 8 14 3.4375 3.4171 -3.4340 9 1 2.1397 3.5955 -4.1333 10 1 4.1800 4.7031 -3.4339 11 1 4.2392 2.3821 -4.1347 12 6 2.1389 -1.1671 -0.0005 13 8 3.3548 -1.1671 -0.0001 14 7 1.4650 -2.3344 -0.0005 15 6 2.1588 -3.5421 -0.1231 16 6 3.3998 -3.5725 -0.7406 17 6 4.0846 -4.7670 -0.8605 18 6 3.5382 -5.9391 -0.3670 19 6 2.3043 -5.9259 0.2502 20 6 1.6059 -4.7257 0.3837 21 6 0.2865 -4.7039 1.0491 22 6 -0.7406 -5.5309 0.7686 23 6 -1.8750 -5.3181 1.5252 24 6 -1.7827 -4.3286 2.4177 25 16 -0.1841 -3.6004 2.3354 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6083 2.0285 0.5139 30 1 3.1499 1.1385 0.5138 31 1 4.0316 4.4432 -0.8504 32 1 0.4984 -2.3363 0.0806 33 1 3.8318 -2.6618 -1.1285 34 1 5.0508 -4.7861 -1.3426 35 1 4.0802 -6.8682 -0.4654 36 1 1.8816 -6.8429 0.6334 37 1 -0.6803 -6.2990 0.0119 38 1 -2.7712 -5.9089 1.4049 39 1 -2.5703 -4.0240 3.0910 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426570074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:54 Heat of formation + Delta-G solvation = 26.340299 kcal Electronic energy + Delta-G solvation = -23496.520643 eV Core-core repulsion = 20109.548468 eV Total energy + Delta-G solvation = -3386.972175 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.83126 -39.92664 -38.33858 -36.77982 -35.93247 -34.64459 -33.02140 -30.91070 -29.61643 -28.89340 -27.41929 -25.34395 -25.25299 -23.53348 -22.74620 -20.95991 -19.98703 -19.57955 -18.74768 -18.51006 -18.12885 -16.94034 -16.69589 -16.62719 -16.17993 -15.82157 -15.43014 -14.96893 -14.84417 -14.54918 -14.21622 -14.13853 -13.90548 -13.66511 -13.50816 -13.47113 -13.20872 -13.06813 -12.85481 -12.61059 -12.49040 -12.34548 -12.18039 -11.78837 -11.66670 -11.52425 -10.91966 -10.64447 -10.24137 -9.62200 -9.50280 -9.34402 -8.83015 -8.22381 -6.37523 -0.29964 0.34371 0.43494 0.86696 1.15086 1.36275 1.40430 1.47560 1.64740 1.86942 2.11263 2.38336 2.92081 2.96265 3.07409 3.61565 3.95533 4.16307 4.21054 4.26508 4.41686 4.48694 4.54897 4.59922 4.64242 4.72443 4.75963 4.89799 5.02727 5.16625 5.17808 5.28264 5.35345 5.44656 5.50997 5.56564 5.58620 5.64634 5.76330 6.00464 6.04219 6.08577 6.70036 6.93180 7.28776 7.53318 8.84051 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016035 B = 0.003962 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.765972 B = 7065.296679 C = 8266.937248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.617 5.617 3 C 0.277 3.723 4 C -0.544 4.544 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.927 5.927 8 Si 0.967 3.033 9 H -0.261 1.261 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.693 3.307 13 O -0.612 6.612 14 N -0.673 5.673 15 C 0.167 3.833 16 C -0.162 4.162 17 C -0.095 4.095 18 C -0.135 4.135 19 C -0.072 4.072 20 C -0.070 4.070 21 C -0.160 4.160 22 C -0.113 4.113 23 C -0.135 4.135 24 C -0.206 4.206 25 S 0.062 5.938 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.001 0.999 31 H 0.268 0.732 32 H 0.412 0.588 33 H 0.113 0.887 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.529 -22.276 3.666 25.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.351 5.351 3 C 0.155 3.845 4 C -0.583 4.583 5 H 0.069 0.931 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.791 3.209 9 H -0.185 1.185 10 H -0.202 1.202 11 H -0.205 1.205 12 C 0.395 3.605 13 O -0.492 6.492 14 N -0.323 5.323 15 C 0.069 3.931 16 C -0.183 4.183 17 C -0.114 4.114 18 C -0.154 4.154 19 C -0.092 4.092 20 C -0.075 4.075 21 C -0.276 4.276 22 C -0.144 4.144 23 C -0.165 4.165 24 C -0.341 4.341 25 S 0.328 5.672 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.019 0.981 31 H 0.077 0.923 32 H 0.252 0.748 33 H 0.131 0.869 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.179 0.821 38 H 0.189 0.811 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.985 -20.746 4.539 23.910 hybrid contribution -0.543 0.015 -1.362 1.466 sum -11.528 -20.730 3.177 23.932 Atomic orbital electron populations 1.21881 0.78265 1.03669 1.02647 1.47378 1.07799 1.04948 1.75019 1.18736 0.90925 0.78629 0.96184 1.21646 1.37117 1.06613 0.92923 0.93119 1.25814 0.94789 0.96297 1.01920 1.70042 1.38727 1.14812 1.33020 0.85481 0.78815 0.77365 0.79216 1.18529 1.20156 1.20497 1.16079 0.85095 0.81006 0.78295 1.90823 1.13514 1.86319 1.58537 1.42771 1.10595 1.02988 1.75897 1.17905 0.93495 0.84481 0.97183 1.21392 0.95531 0.99939 1.01463 1.21388 1.00035 0.91512 0.98445 1.21374 0.95894 0.98726 0.99426 1.21350 0.94123 0.96271 0.97453 1.17861 0.94407 0.92783 1.02482 1.22830 0.97824 1.03850 1.03124 1.20706 0.91513 1.00411 1.01776 1.20412 1.00248 0.99346 0.96460 1.26096 0.99699 1.02158 1.06183 1.85047 1.09899 1.37084 1.35150 0.90880 0.90132 0.90766 0.95073 0.98072 0.92317 0.74807 0.86898 0.84212 0.82105 0.82401 0.82103 0.81124 0.79479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.51 10.16 127.77 1.30 3.81 16 2 N -0.62 -27.82 2.86 -869.29 -2.48 -30.31 16 3 C 0.28 15.28 5.16 85.63 0.44 15.72 16 4 C -0.54 -31.92 9.39 25.60 0.24 -31.68 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 6 C 0.01 0.64 5.46 84.65 0.46 1.11 16 7 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 8 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.69 31.95 8.08 179.05 1.45 33.40 16 13 O -0.61 -33.71 13.10 -3.98 -0.05 -33.77 16 14 N -0.67 -24.33 4.55 -316.47 -1.44 -25.77 16 15 C 0.17 5.72 6.44 38.42 0.25 5.97 16 16 C -0.16 -5.92 8.71 22.36 0.19 -5.73 16 17 C -0.09 -2.58 10.03 22.30 0.22 -2.35 16 18 C -0.14 -2.78 10.03 22.25 0.22 -2.56 16 19 C -0.07 -1.50 9.67 22.51 0.22 -1.28 16 20 C -0.07 -1.87 5.76 -19.99 -0.12 -1.99 16 21 C -0.16 -3.63 5.22 24.01 0.13 -3.50 16 22 C -0.11 -1.91 9.97 21.43 0.21 -1.70 16 23 C -0.14 -1.88 10.16 21.16 0.21 -1.66 16 24 C -0.21 -3.22 11.22 66.76 0.75 -2.47 16 25 S 0.06 1.42 21.80 -56.49 -1.23 0.19 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.08 2.61 8.07 -2.39 -0.02 2.59 16 28 H 0.07 1.99 6.45 -2.39 -0.02 1.98 16 29 H 0.03 1.72 8.07 -2.38 -0.02 1.70 16 30 H 0.00 0.07 7.42 -2.39 -0.02 0.06 16 31 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 32 H 0.41 12.55 4.87 -92.71 -0.45 12.10 16 33 H 0.11 5.08 5.80 -2.91 -0.02 5.07 16 34 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 37 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 38 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 39 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -76.59 345.18 3.91 -72.67 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.63 Total: 20.54 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: 6.18 Total: 5.08 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -3.64 Total: -112.17 kcal Atomic # 8 Polarization: -33.71 SS G_CDS: -0.05 Total: -33.77 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -1.23 Total: 0.19 kcal Total: -76.59 3.91 -72.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426570074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.011 kcal (2) G-P(sol) polarization free energy of solvation -76.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds