Wall clock time and date at job start Tue Mar 31 2020 11:48:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.46504 * 119.99791 * 2 1
4 4 C 1.50700 * 109.46772 * 269.99638 * 3 2 1
5 5 C 1.34854 * 125.88874 * 95.00382 * 4 3 2
6 6 C 1.40885 * 107.41546 * 180.02562 * 5 4 3
7 7 C 1.34854 * 107.41906 * 359.97438 * 6 5 4
8 8 N 1.36335 * 125.89106 * 275.33136 * 4 3 2
9 9 H 0.97000 * 125.63773 * 359.97438 * 8 4 3
10 10 C 1.34776 * 120.00238 * 179.97438 * 2 1 3
11 11 O 1.21549 * 119.99912 * 175.49141 * 10 2 1
12 12 C 1.47859 * 120.00009 * 355.49468 * 10 2 1
13 13 C 1.39666 * 120.10230 * 221.19381 * 12 10 2
14 14 C 1.38050 * 120.04269 * 179.78767 * 13 12 10
15 15 C 1.38180 * 120.23610 * 0.46865 * 14 13 12
16 16 C 1.39180 * 120.20671 * 359.78305 * 15 14 13
17 17 S 1.76192 * 120.02128 * 179.97438 * 16 15 14
18 18 C 1.76197 * 100.00501 * 265.12432 * 17 16 15
19 19 H 1.08010 * 119.99520 * 5.02589 * 18 17 16
20 20 C 1.38724 * 120.00237 * 185.01930 * 18 17 16
21 21 N 1.31620 * 120.00263 * 0.02562 * 20 18 17
22 22 Si 1.86806 * 120.00053 * 180.02562 * 20 18 17
23 23 H 1.48499 * 109.47328 * 89.99799 * 22 20 18
24 24 H 1.48497 * 109.47269 * 210.00335 * 22 20 18
25 25 H 1.48502 * 109.47023 * 330.00170 * 22 20 18
26 26 C 1.38875 * 119.95534 * 359.97438 * 16 15 14
27 27 H 1.09002 * 109.46930 * 95.16806 * 1 2 3
28 28 H 1.09001 * 109.46544 * 215.16691 * 1 2 3
29 29 H 1.08995 * 109.47349 * 335.16567 * 1 2 3
30 30 H 1.08994 * 109.46937 * 149.99657 * 3 2 1
31 31 H 1.09000 * 109.47103 * 29.99778 * 3 2 1
32 32 H 1.08000 * 126.29364 * 0.03812 * 5 4 3
33 33 H 1.08003 * 126.29124 * 179.97438 * 6 5 4
34 34 H 1.08001 * 125.89237 * 180.02562 * 7 6 5
35 35 H 1.08005 * 119.98201 * 0.02562 * 13 12 10
36 36 H 1.08000 * 119.88231 * 180.20995 * 14 13 12
37 37 H 1.08007 * 119.89491 * 179.76558 * 15 14 13
38 38 H 0.97006 * 119.99940 * 179.97438 * 21 20 18
39 39 H 1.07999 * 120.11629 * 180.02562 * 26 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.4487 1.7037 -1.4208
5 6 1.6828 2.5538 -2.1345
6 6 2.2720 2.6849 -3.4075
7 6 3.3758 1.9103 -3.4231
8 7 3.4860 1.3008 -2.2085
9 1 4.1880 0.6845 -1.9471
10 6 2.1390 -1.1672 0.0005
11 8 3.3516 -1.1688 -0.0822
12 6 1.4032 -2.4457 0.1017
13 6 1.8949 -3.4750 0.9074
14 6 1.2046 -4.6666 1.0044
15 6 0.0310 -4.8503 0.2986
16 6 -0.4655 -3.8332 -0.5114
17 16 -1.9622 -4.0729 -1.4097
18 6 -1.3085 -4.6025 -2.9579
19 1 -0.2462 -4.7633 -3.0689
20 6 -2.1582 -4.8130 -4.0341
21 7 -3.4526 -4.6167 -3.8989
22 14 -1.4652 -5.3752 -5.6752
23 1 -1.4433 -6.8593 -5.7211
24 1 -2.3177 -4.8583 -6.7757
25 1 -0.0833 -4.8548 -5.8334
26 6 0.2195 -2.6293 -0.6111
27 1 -0.3633 -0.0926 -1.0235
28 1 -0.3632 -0.8401 0.5919
29 1 -0.3634 0.9326 0.4316
30 1 3.1499 1.1385 0.5139
31 1 1.6084 2.0284 0.5138
32 1 0.7833 3.0442 -1.7929
33 1 1.9068 3.2938 -4.2213
34 1 4.0531 1.7899 -4.2557
35 1 2.8138 -3.3374 1.4580
36 1 1.5855 -5.4597 1.6309
37 1 -0.5027 -5.7862 0.3756
38 1 -4.0466 -4.7636 -4.6516
39 1 -0.1636 -1.8382 -1.2386
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000430635687.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:14
Heat of formation + Delta-G solvation = 41.933357 kcal
Electronic energy + Delta-G solvation = -23183.137686 eV
Core-core repulsion = 19796.841677 eV
Total energy + Delta-G solvation = -3386.296009 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.099 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-41.17021 -40.02300 -37.87269 -35.69887 -32.55227 -31.71798 -30.85380 -30.55232
-29.82477 -27.01782 -25.74306 -25.60528 -22.87971 -22.31391 -20.56590 -20.31632
-19.68885 -17.90389 -17.68974 -17.06061 -16.52043 -16.03927 -15.29895 -14.89749
-14.85353 -14.32733 -14.06181 -13.81099 -13.59197 -13.42766 -13.28811 -13.04867
-12.83562 -12.70967 -12.39355 -12.27699 -12.05262 -11.64655 -11.60431 -11.19161
-11.14277 -11.11478 -10.72267 -10.01910 -9.88234 -9.20137 -9.01943 -8.85563
-8.82351 -8.57928 -8.09805 -8.03320 -6.76902 -6.33290 -4.07572 1.24861
1.63523 2.13607 2.82434 2.90017 3.15101 3.18461 3.24661 3.28162
3.38760 3.41332 4.01635 4.19118 4.53797 4.86191 5.00289 5.03912
5.13940 5.20040 5.21421 5.32200 5.35284 5.42407 5.50403 5.56835
5.69392 5.72282 5.78097 5.88276 6.00742 6.17377 6.23098 6.29273
6.38841 6.56447 6.66566 6.87482 6.98732 7.14336 7.16651 7.29196
7.53622 7.61378 8.12592 8.28609 9.13157 10.73285
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.010984 B = 0.004406 C = 0.003571
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2548.664225 B = 6353.240087 C = 7839.068490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.607 5.607
3 C 0.184 3.816
4 C -0.005 4.005
5 C -0.185 4.185
6 C -0.204 4.204
7 C -0.011 4.011
8 N -0.545 5.545
9 H 0.417 0.583
10 C 0.571 3.429
11 O -0.548 6.548
12 C -0.151 4.151
13 C -0.069 4.069
14 C -0.140 4.140
15 C -0.058 4.058
16 C -0.106 4.106
17 S -0.035 6.035
18 C -0.521 4.521
19 H 0.075 0.925
20 C 0.075 3.925
21 N -0.870 5.870
22 Si 0.918 3.082
23 H -0.275 1.275
24 H -0.281 1.281
25 H -0.271 1.271
26 C -0.052 4.052
27 H 0.067 0.933
28 H 0.082 0.918
29 H 0.073 0.927
30 H 0.087 0.913
31 H 0.101 0.899
32 H 0.134 0.866
33 H 0.133 0.867
34 H 0.161 0.839
35 H 0.122 0.878
36 H 0.124 0.876
37 H 0.131 0.869
38 H 0.270 0.730
39 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.504 11.066 8.158 16.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 N -0.339 5.339
3 C 0.061 3.939
4 C -0.119 4.119
5 C -0.210 4.210
6 C -0.229 4.229
7 C -0.144 4.144
8 N -0.139 5.139
9 H 0.254 0.746
10 C 0.361 3.639
11 O -0.427 6.427
12 C -0.155 4.155
13 C -0.088 4.088
14 C -0.159 4.159
15 C -0.079 4.079
16 C -0.217 4.217
17 S 0.200 5.800
18 C -0.668 4.668
19 H 0.093 0.907
20 C -0.134 4.134
21 N -0.505 5.505
22 Si 0.744 3.256
23 H -0.201 1.201
24 H -0.206 1.206
25 H -0.196 1.196
26 C -0.073 4.073
27 H 0.085 0.915
28 H 0.100 0.900
29 H 0.092 0.908
30 H 0.106 0.894
31 H 0.120 0.880
32 H 0.152 0.848
33 H 0.151 0.849
34 H 0.178 0.822
35 H 0.140 0.860
36 H 0.142 0.858
37 H 0.149 0.851
38 H 0.080 0.920
39 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges 8.905 11.107 8.372 16.515
hybrid contribution 1.907 -0.779 -1.539 2.572
sum 10.812 10.328 6.833 16.439
Atomic orbital electron populations
1.22196 0.78432 1.03490 1.02934 1.47863 1.07610 1.05150 1.73319
1.19858 0.98235 0.85160 0.90607 1.20679 0.92746 1.03119 0.95367
1.20696 1.01500 1.03990 0.94853 1.20876 0.97989 1.05511 0.98535
1.21869 1.02197 1.01048 0.89284 1.42053 1.23103 1.37033 1.11711
0.74626 1.18530 0.86794 0.83693 0.74908 1.90685 1.13953 1.87506
1.50571 1.19767 0.97523 0.94563 1.03675 1.21036 0.98488 0.92224
0.97048 1.21095 0.96289 0.97249 1.01310 1.21942 0.94210 0.98274
0.93499 1.22793 1.03258 0.94746 1.00885 1.83558 0.99960 1.87061
1.09459 1.22835 0.96316 1.52199 0.95468 0.90705 1.24976 0.94712
0.94843 0.98876 1.69978 1.02445 1.45941 1.32154 0.86154 0.79029
0.79010 0.81364 1.20093 1.20594 1.19617 1.22183 0.91761 0.97611
0.95763 0.91462 0.89993 0.90805 0.89448 0.88043 0.84846 0.84864
0.82165 0.85989 0.85799 0.85130 0.92030 0.84605
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.84 8.96 59.85 0.54 1.37 16
2 N -0.61 -7.94 2.86 -184.07 -0.53 -8.47 16
3 C 0.18 2.04 5.95 -5.19 -0.03 2.01 16
4 C 0.00 -0.06 6.75 -81.79 -0.55 -0.61 16
5 C -0.18 -2.30 10.76 -39.78 -0.43 -2.73 16
6 C -0.20 -2.53 10.86 -39.78 -0.43 -2.97 16
7 C -0.01 -0.14 11.94 -16.75 -0.20 -0.34 16
8 N -0.54 -6.88 6.07 -9.12 -0.06 -6.93 16
9 H 0.42 5.04 8.96 -40.82 -0.37 4.68 16
10 C 0.57 9.15 7.32 -12.32 -0.09 9.06 16
11 O -0.55 -9.72 16.56 5.32 0.09 -9.63 16
12 C -0.15 -2.54 5.15 -105.00 -0.54 -3.08 16
13 C -0.07 -1.07 9.65 -39.12 -0.38 -1.45 16
14 C -0.14 -2.12 10.02 -39.67 -0.40 -2.51 16
15 C -0.06 -1.04 9.79 -39.25 -0.38 -1.42 16
16 C -0.11 -2.17 5.45 -39.00 -0.21 -2.38 16
17 S -0.03 -0.86 21.40 -107.50 -2.30 -3.16 16
18 C -0.52 -14.40 9.46 30.91 0.29 -14.11 16
19 H 0.07 2.08 7.79 -52.48 -0.41 1.68 16
20 C 0.08 2.07 5.49 -17.46 -0.10 1.97 16
21 N -0.87 -24.86 13.22 55.49 0.73 -24.13 16
22 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16
23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16
24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16
26 C -0.05 -0.96 7.37 -38.92 -0.29 -1.25 16
27 H 0.07 0.87 6.86 -51.93 -0.36 0.51 16
28 H 0.08 1.01 5.99 -51.93 -0.31 0.70 16
29 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16
30 H 0.09 0.98 7.49 -51.93 -0.39 0.59 16
31 H 0.10 0.82 7.86 -51.93 -0.41 0.42 16
32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16
33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16
34 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16
35 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16
36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16
37 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16
38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16
39 H 0.14 2.52 5.52 -52.49 -0.29 2.23 16
LS Contribution 350.88 15.07 5.29 5.29
Total: -1.00 -32.20 350.88 -9.60 -41.80
By element:
Atomic # 1 Polarization: 12.04 SS G_CDS: -4.61 Total: 7.43 kcal
Atomic # 6 Polarization: -15.23 SS G_CDS: -3.20 Total: -18.43 kcal
Atomic # 7 Polarization: -39.68 SS G_CDS: 0.15 Total: -39.52 kcal
Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal
Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal
Atomic # 16 Polarization: -0.86 SS G_CDS: -2.30 Total: -3.16 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -32.20 -9.60 -41.80 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000430635687.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.735 kcal
(2) G-P(sol) polarization free energy of solvation -32.198 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.537 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.933 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds