Wall clock time and date at job start Tue Mar 31 2020 11:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99791 * 2 1 4 4 C 1.50700 * 109.46772 * 269.99638 * 3 2 1 5 5 C 1.34854 * 125.88874 * 95.00382 * 4 3 2 6 6 C 1.40885 * 107.41546 * 180.02562 * 5 4 3 7 7 C 1.34854 * 107.41906 * 359.97438 * 6 5 4 8 8 N 1.36335 * 125.89106 * 275.33136 * 4 3 2 9 9 H 0.97000 * 125.63773 * 359.97438 * 8 4 3 10 10 C 1.34776 * 120.00238 * 179.97438 * 2 1 3 11 11 O 1.21549 * 119.99912 * 175.49141 * 10 2 1 12 12 C 1.47859 * 120.00009 * 355.49468 * 10 2 1 13 13 C 1.39666 * 120.10230 * 221.19381 * 12 10 2 14 14 C 1.38050 * 120.04269 * 179.78767 * 13 12 10 15 15 C 1.38180 * 120.23610 * 0.46865 * 14 13 12 16 16 C 1.39180 * 120.20671 * 359.78305 * 15 14 13 17 17 S 1.76192 * 120.02128 * 179.97438 * 16 15 14 18 18 C 1.76197 * 100.00501 * 265.12432 * 17 16 15 19 19 H 1.08010 * 119.99520 * 5.02589 * 18 17 16 20 20 C 1.38724 * 120.00237 * 185.01930 * 18 17 16 21 21 N 1.31620 * 120.00263 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00053 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47328 * 89.99799 * 22 20 18 24 24 H 1.48497 * 109.47269 * 210.00335 * 22 20 18 25 25 H 1.48502 * 109.47023 * 330.00170 * 22 20 18 26 26 C 1.38875 * 119.95534 * 359.97438 * 16 15 14 27 27 H 1.09002 * 109.46930 * 95.16806 * 1 2 3 28 28 H 1.09001 * 109.46544 * 215.16691 * 1 2 3 29 29 H 1.08995 * 109.47349 * 335.16567 * 1 2 3 30 30 H 1.08994 * 109.46937 * 149.99657 * 3 2 1 31 31 H 1.09000 * 109.47103 * 29.99778 * 3 2 1 32 32 H 1.08000 * 126.29364 * 0.03812 * 5 4 3 33 33 H 1.08003 * 126.29124 * 179.97438 * 6 5 4 34 34 H 1.08001 * 125.89237 * 180.02562 * 7 6 5 35 35 H 1.08005 * 119.98201 * 0.02562 * 13 12 10 36 36 H 1.08000 * 119.88231 * 180.20995 * 14 13 12 37 37 H 1.08007 * 119.89491 * 179.76558 * 15 14 13 38 38 H 0.97006 * 119.99940 * 179.97438 * 21 20 18 39 39 H 1.07999 * 120.11629 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 1.6828 2.5538 -2.1345 6 6 2.2720 2.6849 -3.4075 7 6 3.3758 1.9103 -3.4231 8 7 3.4860 1.3008 -2.2085 9 1 4.1880 0.6845 -1.9471 10 6 2.1390 -1.1672 0.0005 11 8 3.3516 -1.1688 -0.0822 12 6 1.4032 -2.4457 0.1017 13 6 1.8949 -3.4750 0.9074 14 6 1.2046 -4.6666 1.0044 15 6 0.0310 -4.8503 0.2986 16 6 -0.4655 -3.8332 -0.5114 17 16 -1.9622 -4.0729 -1.4097 18 6 -1.3085 -4.6025 -2.9579 19 1 -0.2462 -4.7633 -3.0689 20 6 -2.1582 -4.8130 -4.0341 21 7 -3.4526 -4.6167 -3.8989 22 14 -1.4652 -5.3752 -5.6752 23 1 -1.4433 -6.8593 -5.7211 24 1 -2.3177 -4.8583 -6.7757 25 1 -0.0833 -4.8548 -5.8334 26 6 0.2195 -2.6293 -0.6111 27 1 -0.3633 -0.0926 -1.0235 28 1 -0.3632 -0.8401 0.5919 29 1 -0.3634 0.9326 0.4316 30 1 3.1499 1.1385 0.5139 31 1 1.6084 2.0284 0.5138 32 1 0.7833 3.0442 -1.7929 33 1 1.9068 3.2938 -4.2213 34 1 4.0531 1.7899 -4.2557 35 1 2.8138 -3.3374 1.4580 36 1 1.5855 -5.4597 1.6309 37 1 -0.5027 -5.7862 0.3756 38 1 -4.0466 -4.7636 -4.6516 39 1 -0.1636 -1.8382 -1.2386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430635687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:14 Heat of formation + Delta-G solvation = 41.933357 kcal Electronic energy + Delta-G solvation = -23183.137686 eV Core-core repulsion = 19796.841677 eV Total energy + Delta-G solvation = -3386.296009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.17021 -40.02300 -37.87269 -35.69887 -32.55227 -31.71798 -30.85380 -30.55232 -29.82477 -27.01782 -25.74306 -25.60528 -22.87971 -22.31391 -20.56590 -20.31632 -19.68885 -17.90389 -17.68974 -17.06061 -16.52043 -16.03927 -15.29895 -14.89749 -14.85353 -14.32733 -14.06181 -13.81099 -13.59197 -13.42766 -13.28811 -13.04867 -12.83562 -12.70967 -12.39355 -12.27699 -12.05262 -11.64655 -11.60431 -11.19161 -11.14277 -11.11478 -10.72267 -10.01910 -9.88234 -9.20137 -9.01943 -8.85563 -8.82351 -8.57928 -8.09805 -8.03320 -6.76902 -6.33290 -4.07572 1.24861 1.63523 2.13607 2.82434 2.90017 3.15101 3.18461 3.24661 3.28162 3.38760 3.41332 4.01635 4.19118 4.53797 4.86191 5.00289 5.03912 5.13940 5.20040 5.21421 5.32200 5.35284 5.42407 5.50403 5.56835 5.69392 5.72282 5.78097 5.88276 6.00742 6.17377 6.23098 6.29273 6.38841 6.56447 6.66566 6.87482 6.98732 7.14336 7.16651 7.29196 7.53622 7.61378 8.12592 8.28609 9.13157 10.73285 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.004406 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.664225 B = 6353.240087 C = 7839.068490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.184 3.816 4 C -0.005 4.005 5 C -0.185 4.185 6 C -0.204 4.204 7 C -0.011 4.011 8 N -0.545 5.545 9 H 0.417 0.583 10 C 0.571 3.429 11 O -0.548 6.548 12 C -0.151 4.151 13 C -0.069 4.069 14 C -0.140 4.140 15 C -0.058 4.058 16 C -0.106 4.106 17 S -0.035 6.035 18 C -0.521 4.521 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.870 5.870 22 Si 0.918 3.082 23 H -0.275 1.275 24 H -0.281 1.281 25 H -0.271 1.271 26 C -0.052 4.052 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.161 0.839 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.504 11.066 8.158 16.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.339 5.339 3 C 0.061 3.939 4 C -0.119 4.119 5 C -0.210 4.210 6 C -0.229 4.229 7 C -0.144 4.144 8 N -0.139 5.139 9 H 0.254 0.746 10 C 0.361 3.639 11 O -0.427 6.427 12 C -0.155 4.155 13 C -0.088 4.088 14 C -0.159 4.159 15 C -0.079 4.079 16 C -0.217 4.217 17 S 0.200 5.800 18 C -0.668 4.668 19 H 0.093 0.907 20 C -0.134 4.134 21 N -0.505 5.505 22 Si 0.744 3.256 23 H -0.201 1.201 24 H -0.206 1.206 25 H -0.196 1.196 26 C -0.073 4.073 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.152 0.848 33 H 0.151 0.849 34 H 0.178 0.822 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.905 11.107 8.372 16.515 hybrid contribution 1.907 -0.779 -1.539 2.572 sum 10.812 10.328 6.833 16.439 Atomic orbital electron populations 1.22196 0.78432 1.03490 1.02934 1.47863 1.07610 1.05150 1.73319 1.19858 0.98235 0.85160 0.90607 1.20679 0.92746 1.03119 0.95367 1.20696 1.01500 1.03990 0.94853 1.20876 0.97989 1.05511 0.98535 1.21869 1.02197 1.01048 0.89284 1.42053 1.23103 1.37033 1.11711 0.74626 1.18530 0.86794 0.83693 0.74908 1.90685 1.13953 1.87506 1.50571 1.19767 0.97523 0.94563 1.03675 1.21036 0.98488 0.92224 0.97048 1.21095 0.96289 0.97249 1.01310 1.21942 0.94210 0.98274 0.93499 1.22793 1.03258 0.94746 1.00885 1.83558 0.99960 1.87061 1.09459 1.22835 0.96316 1.52199 0.95468 0.90705 1.24976 0.94712 0.94843 0.98876 1.69978 1.02445 1.45941 1.32154 0.86154 0.79029 0.79010 0.81364 1.20093 1.20594 1.19617 1.22183 0.91761 0.97611 0.95763 0.91462 0.89993 0.90805 0.89448 0.88043 0.84846 0.84864 0.82165 0.85989 0.85799 0.85130 0.92030 0.84605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 8.96 59.85 0.54 1.37 16 2 N -0.61 -7.94 2.86 -184.07 -0.53 -8.47 16 3 C 0.18 2.04 5.95 -5.19 -0.03 2.01 16 4 C 0.00 -0.06 6.75 -81.79 -0.55 -0.61 16 5 C -0.18 -2.30 10.76 -39.78 -0.43 -2.73 16 6 C -0.20 -2.53 10.86 -39.78 -0.43 -2.97 16 7 C -0.01 -0.14 11.94 -16.75 -0.20 -0.34 16 8 N -0.54 -6.88 6.07 -9.12 -0.06 -6.93 16 9 H 0.42 5.04 8.96 -40.82 -0.37 4.68 16 10 C 0.57 9.15 7.32 -12.32 -0.09 9.06 16 11 O -0.55 -9.72 16.56 5.32 0.09 -9.63 16 12 C -0.15 -2.54 5.15 -105.00 -0.54 -3.08 16 13 C -0.07 -1.07 9.65 -39.12 -0.38 -1.45 16 14 C -0.14 -2.12 10.02 -39.67 -0.40 -2.51 16 15 C -0.06 -1.04 9.79 -39.25 -0.38 -1.42 16 16 C -0.11 -2.17 5.45 -39.00 -0.21 -2.38 16 17 S -0.03 -0.86 21.40 -107.50 -2.30 -3.16 16 18 C -0.52 -14.40 9.46 30.91 0.29 -14.11 16 19 H 0.07 2.08 7.79 -52.48 -0.41 1.68 16 20 C 0.08 2.07 5.49 -17.46 -0.10 1.97 16 21 N -0.87 -24.86 13.22 55.49 0.73 -24.13 16 22 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 26 C -0.05 -0.96 7.37 -38.92 -0.29 -1.25 16 27 H 0.07 0.87 6.86 -51.93 -0.36 0.51 16 28 H 0.08 1.01 5.99 -51.93 -0.31 0.70 16 29 H 0.07 0.63 7.83 -51.93 -0.41 0.23 16 30 H 0.09 0.98 7.49 -51.93 -0.39 0.59 16 31 H 0.10 0.82 7.86 -51.93 -0.41 0.42 16 32 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 34 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.13 2.22 8.06 -52.48 -0.42 1.80 16 38 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 39 H 0.14 2.52 5.52 -52.49 -0.29 2.23 16 LS Contribution 350.88 15.07 5.29 5.29 Total: -1.00 -32.20 350.88 -9.60 -41.80 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.61 Total: 7.43 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: -3.20 Total: -18.43 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.15 Total: -39.52 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.30 Total: -3.16 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.20 -9.60 -41.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430635687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.735 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds