Wall clock time and date at job start Tue Mar 31 2020 11:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99791 * 2 1 4 4 C 1.50700 * 109.46772 * 269.99638 * 3 2 1 5 5 C 1.34854 * 125.88874 * 95.00382 * 4 3 2 6 6 C 1.40885 * 107.41546 * 180.02562 * 5 4 3 7 7 C 1.34854 * 107.41906 * 359.97438 * 6 5 4 8 8 N 1.36335 * 125.89106 * 275.33136 * 4 3 2 9 9 H 0.97000 * 125.63773 * 359.97438 * 8 4 3 10 10 C 1.34776 * 120.00238 * 179.97438 * 2 1 3 11 11 O 1.21549 * 119.99912 * 175.49141 * 10 2 1 12 12 C 1.47859 * 120.00009 * 355.49468 * 10 2 1 13 13 C 1.39666 * 120.10230 * 221.19381 * 12 10 2 14 14 C 1.38050 * 120.04269 * 179.78767 * 13 12 10 15 15 C 1.38180 * 120.23610 * 0.46865 * 14 13 12 16 16 C 1.39180 * 120.20671 * 359.78305 * 15 14 13 17 17 S 1.76192 * 120.02128 * 179.97438 * 16 15 14 18 18 C 1.76197 * 100.00501 * 265.12432 * 17 16 15 19 19 H 1.08010 * 119.99520 * 5.02589 * 18 17 16 20 20 C 1.38724 * 120.00237 * 185.01930 * 18 17 16 21 21 N 1.31620 * 120.00263 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00053 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47328 * 89.99799 * 22 20 18 24 24 H 1.48497 * 109.47269 * 210.00335 * 22 20 18 25 25 H 1.48502 * 109.47023 * 330.00170 * 22 20 18 26 26 C 1.38875 * 119.95534 * 359.97438 * 16 15 14 27 27 H 1.09002 * 109.46930 * 95.16806 * 1 2 3 28 28 H 1.09001 * 109.46544 * 215.16691 * 1 2 3 29 29 H 1.08995 * 109.47349 * 335.16567 * 1 2 3 30 30 H 1.08994 * 109.46937 * 149.99657 * 3 2 1 31 31 H 1.09000 * 109.47103 * 29.99778 * 3 2 1 32 32 H 1.08000 * 126.29364 * 0.03812 * 5 4 3 33 33 H 1.08003 * 126.29124 * 179.97438 * 6 5 4 34 34 H 1.08001 * 125.89237 * 180.02562 * 7 6 5 35 35 H 1.08005 * 119.98201 * 0.02562 * 13 12 10 36 36 H 1.08000 * 119.88231 * 180.20995 * 14 13 12 37 37 H 1.08007 * 119.89491 * 179.76558 * 15 14 13 38 38 H 0.97006 * 119.99940 * 179.97438 * 21 20 18 39 39 H 1.07999 * 120.11629 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 1.6828 2.5538 -2.1345 6 6 2.2720 2.6849 -3.4075 7 6 3.3758 1.9103 -3.4231 8 7 3.4860 1.3008 -2.2085 9 1 4.1880 0.6845 -1.9471 10 6 2.1390 -1.1672 0.0005 11 8 3.3516 -1.1688 -0.0822 12 6 1.4032 -2.4457 0.1017 13 6 1.8949 -3.4750 0.9074 14 6 1.2046 -4.6666 1.0044 15 6 0.0310 -4.8503 0.2986 16 6 -0.4655 -3.8332 -0.5114 17 16 -1.9622 -4.0729 -1.4097 18 6 -1.3085 -4.6025 -2.9579 19 1 -0.2462 -4.7633 -3.0689 20 6 -2.1582 -4.8130 -4.0341 21 7 -3.4526 -4.6167 -3.8989 22 14 -1.4652 -5.3752 -5.6752 23 1 -1.4433 -6.8593 -5.7211 24 1 -2.3177 -4.8583 -6.7757 25 1 -0.0833 -4.8548 -5.8334 26 6 0.2195 -2.6293 -0.6111 27 1 -0.3633 -0.0926 -1.0235 28 1 -0.3632 -0.8401 0.5919 29 1 -0.3634 0.9326 0.4316 30 1 3.1499 1.1385 0.5139 31 1 1.6084 2.0284 0.5138 32 1 0.7833 3.0442 -1.7929 33 1 1.9068 3.2938 -4.2213 34 1 4.0531 1.7899 -4.2557 35 1 2.8138 -3.3374 1.4580 36 1 1.5855 -5.4597 1.6309 37 1 -0.5027 -5.7862 0.3756 38 1 -4.0466 -4.7636 -4.6516 39 1 -0.1636 -1.8382 -1.2386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430635687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:13 Heat of formation + Delta-G solvation = 23.843612 kcal Electronic energy + Delta-G solvation = -23183.922116 eV Core-core repulsion = 19796.841677 eV Total energy + Delta-G solvation = -3387.080439 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12880 -41.21399 -39.18432 -36.81785 -34.65095 -32.89531 -31.93946 -31.78438 -30.90204 -28.02219 -27.72687 -26.78173 -24.11515 -23.68880 -21.55260 -21.32305 -20.82681 -19.74911 -18.66419 -18.39182 -17.71637 -17.26891 -16.92931 -16.54145 -16.30758 -15.57225 -15.25417 -14.92941 -14.75592 -14.67971 -14.42045 -14.33954 -13.93890 -13.89927 -13.58528 -13.28582 -13.17797 -13.10171 -13.02400 -12.97725 -12.61510 -12.53103 -12.33898 -11.74078 -11.29052 -11.16409 -10.69876 -9.98856 -9.87334 -9.76852 -9.67646 -9.01708 -8.77668 -8.39569 -6.17861 -0.10436 0.24305 1.17400 1.29772 1.35226 1.44163 1.56897 1.68032 1.92606 2.22565 2.28547 2.49112 2.69532 2.93600 3.37249 3.43517 3.88401 3.96006 4.06943 4.11685 4.26311 4.35564 4.38991 4.47196 4.50576 4.57066 4.64137 4.67307 4.80722 4.87343 4.94143 5.19718 5.31823 5.32508 5.37387 5.38701 5.41378 5.47683 5.83694 6.03397 6.15776 6.16672 6.25093 6.69014 6.93466 7.02057 8.66936 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.004406 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.664225 B = 6353.240087 C = 7839.068490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.599 5.599 3 C 0.183 3.817 4 C -0.019 4.019 5 C -0.195 4.195 6 C -0.225 4.225 7 C -0.019 4.019 8 N -0.552 5.552 9 H 0.417 0.583 10 C 0.566 3.434 11 O -0.569 6.569 12 C -0.154 4.154 13 C -0.062 4.062 14 C -0.123 4.123 15 C -0.067 4.067 16 C -0.128 4.128 17 S -0.075 6.075 18 C -0.539 4.539 19 H 0.062 0.938 20 C 0.027 3.973 21 N -0.902 5.902 22 Si 0.983 3.017 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.055 4.055 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.183 0.817 35 H 0.146 0.854 36 H 0.166 0.834 37 H 0.134 0.866 38 H 0.274 0.726 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.932 11.415 8.832 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.329 5.329 3 C 0.061 3.939 4 C -0.133 4.133 5 C -0.221 4.221 6 C -0.249 4.249 7 C -0.151 4.151 8 N -0.147 5.147 9 H 0.254 0.746 10 C 0.355 3.645 11 O -0.450 6.450 12 C -0.158 4.158 13 C -0.081 4.081 14 C -0.142 4.142 15 C -0.087 4.087 16 C -0.239 4.239 17 S 0.159 5.841 18 C -0.687 4.687 19 H 0.080 0.920 20 C -0.179 4.179 21 N -0.538 5.538 22 Si 0.805 3.195 23 H -0.190 1.190 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.076 4.076 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.154 0.846 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.200 0.800 35 H 0.164 0.836 36 H 0.183 0.817 37 H 0.152 0.848 38 H 0.083 0.917 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.312 11.477 9.061 17.893 hybrid contribution 1.537 -0.827 -1.649 2.401 sum 11.849 10.650 7.412 17.571 Atomic orbital electron populations 1.22250 0.77610 1.05143 1.02077 1.47918 1.08139 1.05127 1.71718 1.20116 0.98715 0.84819 0.90202 1.20958 0.92905 1.03433 0.96046 1.21012 1.02026 1.04051 0.94978 1.21208 0.98442 1.06122 0.99143 1.22340 1.02531 1.00561 0.89679 1.42200 1.23274 1.37150 1.12078 0.74630 1.18470 0.86553 0.84224 0.75216 1.90673 1.14573 1.87832 1.51913 1.19937 0.96758 0.95739 1.03398 1.21423 0.98937 0.91712 0.96017 1.21438 0.94503 0.98037 1.00258 1.22039 0.95377 0.97789 0.93536 1.22534 1.02367 0.96686 1.02316 1.83396 1.04076 1.87288 1.09310 1.23053 0.95854 1.52593 0.97166 0.91977 1.25849 0.94968 0.94754 1.02343 1.70076 1.03584 1.46812 1.33336 0.85180 0.78184 0.78962 0.77138 1.19006 1.19500 1.19718 1.22002 0.92476 0.96835 0.96264 0.93128 0.90848 0.87110 0.89529 0.84638 0.83347 0.83674 0.79956 0.83586 0.81691 0.84793 0.91655 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.58 8.96 127.77 1.15 2.73 16 2 N -0.60 -14.79 2.86 -854.55 -2.44 -17.24 16 3 C 0.18 3.70 5.95 85.63 0.51 4.20 16 4 C -0.02 -0.46 6.75 41.08 0.28 -0.19 16 5 C -0.19 -4.60 10.76 22.14 0.24 -4.36 16 6 C -0.22 -5.35 10.86 22.14 0.24 -5.11 16 7 C -0.02 -0.43 11.94 83.21 0.99 0.56 16 8 N -0.55 -13.51 6.07 -182.77 -1.11 -14.62 16 9 H 0.42 9.88 8.96 -92.71 -0.83 9.04 16 10 C 0.57 17.47 7.32 86.79 0.64 18.10 16 11 O -0.57 -19.45 16.56 -3.87 -0.06 -19.52 16 12 C -0.15 -5.00 5.15 -20.11 -0.10 -5.11 16 13 C -0.06 -1.77 9.65 22.57 0.22 -1.55 16 14 C -0.12 -3.38 10.02 22.21 0.22 -3.15 16 15 C -0.07 -2.32 9.79 22.48 0.22 -2.10 16 16 C -0.13 -5.30 5.45 22.65 0.12 -5.17 16 17 S -0.08 -3.85 21.40 -56.49 -1.21 -5.06 16 18 C -0.54 -30.63 9.46 67.94 0.64 -29.99 16 19 H 0.06 3.56 7.79 -2.91 -0.02 3.54 16 20 C 0.03 1.49 5.49 84.84 0.47 1.96 16 21 N -0.90 -52.46 13.22 21.63 0.29 -52.17 16 22 Si 0.98 43.83 29.55 68.60 2.03 45.86 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C -0.05 -2.04 7.37 22.70 0.17 -1.87 16 27 H 0.05 1.31 6.86 -2.39 -0.02 1.30 16 28 H 0.07 1.78 5.99 -2.39 -0.01 1.76 16 29 H 0.11 1.62 7.83 -2.39 -0.02 1.60 16 30 H 0.09 1.79 7.49 -2.39 -0.02 1.77 16 31 H 0.14 1.77 7.86 -2.39 -0.02 1.75 16 32 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.17 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.27 14.82 8.31 -92.70 -0.77 14.04 16 39 H 0.13 4.88 5.52 -2.91 -0.02 4.86 16 Total: -1.00 -70.57 350.88 3.74 -66.83 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.25 Total: 26.96 kcal Atomic # 6 Polarization: -37.04 SS G_CDS: 6.00 Total: -31.05 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.27 Total: -84.03 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.06 Total: -19.52 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.21 Total: -5.06 kcal Total: -70.57 3.74 -66.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430635687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.674 kcal (2) G-P(sol) polarization free energy of solvation -70.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds