Wall clock time and date at job start Tue Mar 31 2020 10:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46779 * 2 1 4 4 C 1.50693 * 109.47357 * 119.99859 * 2 1 3 5 5 N 1.30949 * 123.03636 * 299.96353 * 4 2 1 6 6 C 1.29370 * 117.46685 * 180.02562 * 5 4 2 7 7 S 1.70926 * 110.57960 * 359.72347 * 6 5 4 8 8 C 1.36711 * 123.03090 * 120.00245 * 4 2 1 9 9 C 1.46620 * 126.17349 * 359.96517 * 8 4 2 10 10 O 1.21697 * 120.00256 * 359.72590 * 9 8 4 11 11 N 1.34784 * 119.99813 * 179.97438 * 9 8 4 12 12 C 1.39102 * 119.99720 * 175.70781 * 11 9 8 13 13 C 1.39519 * 119.83200 * 215.01892 * 12 11 9 14 14 C 1.36360 * 120.16345 * 179.76526 * 13 12 11 15 15 C 1.40881 * 119.82994 * 0.53221 * 14 13 12 16 16 C 1.41137 * 120.16362 * 179.69623 * 15 14 13 17 17 H 1.07993 * 120.00113 * 214.80288 * 16 15 14 18 18 C 1.39906 * 119.99508 * 34.80919 * 16 15 14 19 19 N 1.30872 * 120.00344 * 355.55691 * 18 16 15 20 20 Si 1.86805 * 119.99760 * 175.55205 * 18 16 15 21 21 H 1.48504 * 109.46869 * 89.99897 * 20 18 16 22 22 H 1.48494 * 109.46956 * 209.99714 * 20 18 16 23 23 H 1.48494 * 109.47135 * 330.00262 * 20 18 16 24 24 C 1.40881 * 119.67974 * 359.72115 * 15 14 13 25 25 C 1.36362 * 119.83301 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.47197 * 299.99290 * 1 2 3 27 27 H 1.09000 * 109.47600 * 60.00108 * 1 2 3 28 28 H 1.09001 * 109.46767 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47194 * 240.00708 * 2 1 3 30 30 H 1.09000 * 109.46967 * 300.00280 * 3 2 1 31 31 H 1.09003 * 109.46940 * 59.99909 * 3 2 1 32 32 H 1.09001 * 109.46950 * 180.02562 * 3 2 1 33 33 H 1.08000 * 124.71213 * 180.02562 * 6 5 4 34 34 H 0.96996 * 119.99970 * 355.71444 * 11 9 8 35 35 H 1.07998 * 119.92048 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.08694 * 180.23090 * 14 13 12 37 37 H 0.96997 * 120.00106 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.08635 * 179.97438 * 24 15 14 39 39 H 1.07995 * 119.92370 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7534 -0.3146 2.4471 6 6 2.2422 -1.0050 3.4259 7 16 3.1614 -2.3190 2.8342 8 6 2.8211 -1.8257 1.1771 9 6 3.2932 -2.4945 -0.0393 10 8 2.9799 -2.0613 -1.1325 11 7 4.0701 -3.5920 0.0534 12 6 4.4442 -4.2784 -1.0972 13 6 4.5693 -5.6676 -1.0668 14 6 4.9310 -6.3477 -2.1920 15 6 5.1894 -5.6430 -3.3842 16 6 5.5705 -6.3393 -4.5512 17 1 6.2719 -5.8938 -5.2411 18 6 5.0395 -7.6066 -4.8144 19 7 4.2578 -8.1836 -3.9375 20 14 5.4461 -8.4752 -6.4174 21 1 6.6693 -9.2981 -6.2380 22 1 4.3125 -9.3517 -6.8068 23 1 5.6801 -7.4663 -7.4815 24 6 5.0662 -4.2398 -3.4057 25 6 4.6986 -3.5736 -2.2741 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 2.0868 -0.7848 4.4717 34 1 4.3682 -3.9032 0.9224 35 1 4.3760 -6.2060 -0.1508 36 1 5.0239 -7.4234 -2.1681 37 1 3.8899 -9.0624 -4.1198 38 1 5.2631 -3.6929 -4.3160 39 1 4.6041 -2.4979 -2.2889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448593664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:11 Heat of formation + Delta-G solvation = 24.461265 kcal Electronic energy + Delta-G solvation = -23015.729594 eV Core-core repulsion = 19628.675938 eV Total energy + Delta-G solvation = -3387.053656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.52135 -39.31399 -37.24885 -34.96746 -34.40893 -33.02590 -30.54422 -29.62206 -28.75983 -27.09091 -26.17957 -24.87282 -22.68136 -21.77898 -21.21377 -20.31105 -19.20963 -17.87656 -17.35756 -17.07246 -16.00430 -15.44878 -15.25562 -15.14762 -14.47533 -14.23945 -14.20700 -13.91196 -13.64417 -13.04182 -12.87533 -12.72289 -12.44916 -12.19090 -12.10441 -11.76084 -11.45356 -11.20264 -11.15033 -11.13486 -11.01611 -10.88316 -10.70916 -10.08042 -9.93582 -9.65127 -9.53034 -9.48226 -9.16236 -8.96259 -8.93936 -7.60006 -6.92812 -6.66277 -4.38675 0.14086 1.07001 1.44468 2.34335 2.66668 3.04845 3.07053 3.08730 3.13953 3.41779 3.57862 3.95038 4.01207 4.65530 4.76143 4.84264 5.03106 5.22959 5.27393 5.45348 5.60798 5.69445 5.84151 5.88019 5.98470 6.13617 6.14931 6.27245 6.36598 6.49969 6.69898 6.84145 7.01509 7.13788 7.23690 7.47312 7.58999 7.66351 7.78965 8.01128 8.15508 8.26167 8.52756 8.62431 8.88102 8.94104 10.24543 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002972 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.348656 B = 9418.607348 C =10095.647984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 C -0.135 4.135 4 C 0.147 3.853 5 N -0.467 5.467 6 C 0.026 3.974 7 S 0.153 5.847 8 C -0.280 4.280 9 C 0.580 3.420 10 O -0.510 6.510 11 N -0.639 5.639 12 C -0.002 4.002 13 C -0.117 4.117 14 C -0.141 4.141 15 C 0.102 3.898 16 C -0.459 4.459 17 H 0.077 0.923 18 C 0.069 3.931 19 N -0.809 5.809 20 Si 0.916 3.084 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.205 4.205 25 C -0.082 4.082 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.203 0.797 34 H 0.393 0.607 35 H 0.091 0.909 36 H 0.133 0.867 37 H 0.278 0.722 38 H 0.097 0.903 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.242 10.006 13.452 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C -0.193 4.193 4 C 0.009 3.991 5 N -0.180 5.180 6 C -0.270 4.270 7 S 0.408 5.592 8 C -0.404 4.404 9 C 0.365 3.635 10 O -0.389 6.389 11 N -0.281 5.281 12 C -0.094 4.094 13 C -0.137 4.137 14 C -0.161 4.161 15 C 0.100 3.900 16 C -0.490 4.490 17 H 0.095 0.905 18 C -0.146 4.146 19 N -0.436 5.436 20 Si 0.741 3.259 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.187 1.187 24 C -0.225 4.225 25 C -0.101 4.101 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.220 0.780 34 H 0.227 0.773 35 H 0.110 0.890 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.115 0.885 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.364 9.717 13.406 16.896 hybrid contribution -0.173 -0.267 -0.603 0.682 sum -3.537 9.451 12.803 16.302 Atomic orbital electron populations 1.21726 0.93854 1.01849 1.01919 1.20412 0.96303 0.96159 0.94219 1.21729 1.00878 0.94764 1.01940 1.20967 0.93449 0.91596 0.93054 1.65960 1.22947 1.30355 0.98711 1.28624 0.99338 0.95499 1.03499 1.83902 1.47999 1.29156 0.98176 1.25952 1.12329 1.04952 0.97152 1.16673 0.78935 0.81204 0.86659 1.90698 1.57473 1.64011 1.26671 1.42845 1.48884 1.27089 1.09273 1.17222 1.14677 0.90610 0.86924 1.20312 1.03704 0.91252 0.98454 1.21191 1.03650 1.00549 0.90741 1.17743 0.88883 0.90870 0.92533 1.19522 1.23640 1.00127 1.05665 0.90509 1.25896 0.93458 0.96803 0.98432 1.69756 1.25123 1.14637 1.34132 0.86183 0.78683 0.79364 0.81691 1.19493 1.20269 1.18671 1.20807 1.09844 0.94980 0.96908 1.20398 0.98886 0.98558 0.92305 0.92390 0.91985 0.92903 0.85334 0.92003 0.92379 0.92960 0.78030 0.77330 0.89042 0.84947 0.91062 0.88450 0.87345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.14 37.16 0.34 -1.33 16 2 C -0.05 -0.70 3.18 -91.77 -0.29 -0.99 16 3 C -0.14 -1.62 9.14 37.16 0.34 -1.28 16 4 C 0.15 2.09 5.40 -83.52 -0.45 1.64 16 5 N -0.47 -5.84 10.40 -11.31 -0.12 -5.96 16 6 C 0.03 0.24 12.21 51.73 0.63 0.88 16 7 S 0.15 1.55 22.36 -107.50 -2.40 -0.86 16 8 C -0.28 -4.09 6.51 -36.75 -0.24 -4.33 16 9 C 0.58 10.46 7.61 -12.88 -0.10 10.36 16 10 O -0.51 -10.66 11.46 5.19 0.06 -10.60 16 11 N -0.64 -11.46 5.29 -10.94 -0.06 -11.52 16 12 C 0.00 -0.05 6.30 -83.61 -0.53 -0.58 16 13 C -0.12 -2.63 9.90 -39.78 -0.39 -3.03 16 14 C -0.14 -3.57 8.61 -39.26 -0.34 -3.91 16 15 C 0.10 2.70 5.55 -106.80 -0.59 2.10 16 16 C -0.46 -12.06 9.02 -37.86 -0.34 -12.40 16 17 H 0.08 1.94 7.85 -52.49 -0.41 1.52 16 18 C 0.07 1.73 5.42 -17.34 -0.09 1.64 16 19 N -0.81 -20.76 10.60 55.55 0.59 -20.17 16 20 Si 0.92 18.75 29.56 -169.99 -5.03 13.72 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.21 -5.11 9.74 -39.26 -0.38 -5.49 16 25 C -0.08 -1.92 8.61 -39.78 -0.34 -2.26 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.13 2.12 4.97 -51.93 -0.26 1.86 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.39 5.75 8.01 -40.82 -0.33 5.43 16 35 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.13 3.46 6.13 -52.49 -0.32 3.13 16 37 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 38 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 39 H 0.11 2.49 6.23 -52.49 -0.33 2.17 16 LS Contribution 341.84 15.07 5.15 5.15 Total: -1.00 -29.51 341.84 -9.17 -38.68 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -4.58 Total: 10.52 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -2.78 Total: -18.98 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.41 Total: -37.65 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.06 Total: -10.60 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.40 Total: -0.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.51 -9.17 -38.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448593664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.145 kcal (2) G-P(sol) polarization free energy of solvation -29.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds