Wall clock time and date at job start Tue Mar 31 2020 10:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46779 * 2 1 4 4 C 1.50693 * 109.47357 * 119.99859 * 2 1 3 5 5 N 1.30949 * 123.03636 * 299.96353 * 4 2 1 6 6 C 1.29370 * 117.46685 * 180.02562 * 5 4 2 7 7 S 1.70926 * 110.57960 * 359.72347 * 6 5 4 8 8 C 1.36711 * 123.03090 * 120.00245 * 4 2 1 9 9 C 1.46620 * 126.17349 * 359.96517 * 8 4 2 10 10 O 1.21697 * 120.00256 * 359.72590 * 9 8 4 11 11 N 1.34784 * 119.99813 * 179.97438 * 9 8 4 12 12 C 1.39102 * 119.99720 * 175.70781 * 11 9 8 13 13 C 1.39519 * 119.83200 * 215.01892 * 12 11 9 14 14 C 1.36360 * 120.16345 * 179.76526 * 13 12 11 15 15 C 1.40881 * 119.82994 * 0.53221 * 14 13 12 16 16 C 1.41137 * 120.16362 * 179.69623 * 15 14 13 17 17 H 1.07993 * 120.00113 * 214.80288 * 16 15 14 18 18 C 1.39906 * 119.99508 * 34.80919 * 16 15 14 19 19 N 1.30872 * 120.00344 * 355.55691 * 18 16 15 20 20 Si 1.86805 * 119.99760 * 175.55205 * 18 16 15 21 21 H 1.48504 * 109.46869 * 89.99897 * 20 18 16 22 22 H 1.48494 * 109.46956 * 209.99714 * 20 18 16 23 23 H 1.48494 * 109.47135 * 330.00262 * 20 18 16 24 24 C 1.40881 * 119.67974 * 359.72115 * 15 14 13 25 25 C 1.36362 * 119.83301 * 0.02562 * 24 15 14 26 26 H 1.09003 * 109.47197 * 299.99290 * 1 2 3 27 27 H 1.09000 * 109.47600 * 60.00108 * 1 2 3 28 28 H 1.09001 * 109.46767 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47194 * 240.00708 * 2 1 3 30 30 H 1.09000 * 109.46967 * 300.00280 * 3 2 1 31 31 H 1.09003 * 109.46940 * 59.99909 * 3 2 1 32 32 H 1.09001 * 109.46950 * 180.02562 * 3 2 1 33 33 H 1.08000 * 124.71213 * 180.02562 * 6 5 4 34 34 H 0.96996 * 119.99970 * 355.71444 * 11 9 8 35 35 H 1.07998 * 119.92048 * 359.97438 * 13 12 11 36 36 H 1.07996 * 120.08694 * 180.23090 * 14 13 12 37 37 H 0.96997 * 120.00106 * 180.02562 * 19 18 16 38 38 H 1.08001 * 120.08635 * 179.97438 * 24 15 14 39 39 H 1.07995 * 119.92370 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7534 -0.3146 2.4471 6 6 2.2422 -1.0050 3.4259 7 16 3.1614 -2.3190 2.8342 8 6 2.8211 -1.8257 1.1771 9 6 3.2932 -2.4945 -0.0393 10 8 2.9799 -2.0613 -1.1325 11 7 4.0701 -3.5920 0.0534 12 6 4.4442 -4.2784 -1.0972 13 6 4.5693 -5.6676 -1.0668 14 6 4.9310 -6.3477 -2.1920 15 6 5.1894 -5.6430 -3.3842 16 6 5.5705 -6.3393 -4.5512 17 1 6.2719 -5.8938 -5.2411 18 6 5.0395 -7.6066 -4.8144 19 7 4.2578 -8.1836 -3.9375 20 14 5.4461 -8.4752 -6.4174 21 1 6.6693 -9.2981 -6.2380 22 1 4.3125 -9.3517 -6.8068 23 1 5.6801 -7.4663 -7.4815 24 6 5.0662 -4.2398 -3.4057 25 6 4.6986 -3.5736 -2.2741 26 1 -0.3634 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 2.0868 -0.7848 4.4717 34 1 4.3682 -3.9032 0.9224 35 1 4.3760 -6.2060 -0.1508 36 1 5.0239 -7.4234 -2.1681 37 1 3.8899 -9.0624 -4.1198 38 1 5.2631 -3.6929 -4.3160 39 1 4.6041 -2.4979 -2.2889 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448593664.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:11 Heat of formation + Delta-G solvation = 7.509299 kcal Electronic energy + Delta-G solvation = -23016.464687 eV Core-core repulsion = 19628.675938 eV Total energy + Delta-G solvation = -3387.788748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.71395 -40.66144 -38.98763 -36.34967 -35.72613 -34.78914 -31.84813 -31.47109 -30.41800 -28.05864 -27.43517 -26.37368 -24.03189 -23.17088 -22.79418 -21.93518 -20.49681 -19.28897 -18.87561 -18.42593 -17.45772 -16.98921 -16.53473 -16.51317 -15.75096 -15.59694 -15.42268 -15.21778 -14.79254 -14.71243 -14.48264 -14.02703 -13.82945 -13.63423 -13.37898 -13.26648 -13.02543 -12.89899 -12.80242 -12.53514 -12.15173 -12.13033 -11.89766 -11.69698 -11.41877 -11.23631 -10.98825 -10.76815 -10.59078 -10.52560 -9.87410 -9.49516 -8.77747 -8.52055 -6.34853 -0.82557 0.16800 0.55263 0.78787 1.12259 1.39185 1.40156 1.50794 1.55840 2.05446 2.15526 2.24418 2.78948 3.14422 3.61543 3.71242 3.88105 4.02062 4.22176 4.29478 4.37045 4.48767 4.54440 4.77240 4.81860 4.88914 4.92130 4.99843 5.06206 5.12137 5.18046 5.29085 5.29449 5.38189 5.49966 5.67604 5.85765 5.97801 6.10616 6.35867 6.49117 6.59821 6.65868 6.95056 6.95657 7.18459 8.40598 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.023919 B = 0.002972 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.348656 B = 9418.607348 C =10095.647984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C -0.127 4.127 4 C 0.153 3.847 5 N -0.490 5.490 6 C 0.049 3.951 7 S 0.214 5.786 8 C -0.330 4.330 9 C 0.581 3.419 10 O -0.547 6.547 11 N -0.637 5.637 12 C 0.015 3.985 13 C -0.116 4.116 14 C -0.158 4.158 15 C 0.071 3.929 16 C -0.496 4.496 17 H 0.074 0.926 18 C 0.029 3.971 19 N -0.839 5.839 20 Si 0.988 3.012 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.263 1.263 24 C -0.219 4.219 25 C -0.092 4.092 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.251 0.749 34 H 0.411 0.589 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.285 0.715 38 H 0.098 0.902 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 10.498 16.027 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.080 4.080 3 C -0.185 4.185 4 C 0.014 3.986 5 N -0.204 5.204 6 C -0.245 4.245 7 S 0.470 5.530 8 C -0.454 4.454 9 C 0.370 3.630 10 O -0.427 6.427 11 N -0.280 5.280 12 C -0.079 4.079 13 C -0.136 4.136 14 C -0.178 4.178 15 C 0.069 3.931 16 C -0.527 4.527 17 H 0.092 0.908 18 C -0.184 4.184 19 N -0.467 5.467 20 Si 0.809 3.191 21 H -0.184 1.184 22 H -0.194 1.194 23 H -0.187 1.187 24 C -0.239 4.239 25 C -0.112 4.112 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.266 0.734 34 H 0.248 0.752 35 H 0.142 0.858 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.917 10.210 16.041 19.414 hybrid contribution -0.065 -0.263 -1.137 1.169 sum -3.982 9.947 14.904 18.355 Atomic orbital electron populations 1.21668 0.92749 1.01262 1.02935 1.20384 0.97274 0.96930 0.93430 1.21664 1.00198 0.93726 1.02918 1.21051 0.92554 0.91124 0.93883 1.66039 1.24499 1.31420 0.98394 1.29527 0.96290 0.93761 1.04907 1.83671 1.46920 1.28315 0.94055 1.25596 1.14935 1.06364 0.98474 1.17115 0.77916 0.80452 0.87567 1.90688 1.58469 1.64829 1.28725 1.42718 1.49364 1.27134 1.08827 1.17263 1.12167 0.90702 0.87724 1.20549 1.02573 0.91561 0.98880 1.21170 1.04991 1.00155 0.91508 1.18044 0.90165 0.91570 0.93341 1.19744 1.25049 1.01606 1.06261 0.90802 1.26740 0.92855 0.96949 1.01824 1.69818 1.25784 1.15210 1.35855 0.85103 0.78859 0.78055 0.77062 1.18371 1.19435 1.18665 1.20928 1.10486 0.94875 0.97656 1.20509 0.99164 0.98724 0.92799 0.91423 0.90867 0.94235 0.88352 0.90882 0.91481 0.93902 0.73355 0.75243 0.85813 0.86156 0.90405 0.88384 0.87231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.14 71.98 0.66 -2.41 16 2 C -0.06 -1.64 3.18 -11.54 -0.04 -1.68 16 3 C -0.13 -2.94 9.14 71.98 0.66 -2.29 16 4 C 0.15 4.15 5.40 42.33 0.23 4.38 16 5 N -0.49 -10.81 10.40 -189.70 -1.97 -12.78 16 6 C 0.05 0.71 12.21 130.61 1.59 2.31 16 7 S 0.21 3.59 22.36 -56.49 -1.26 2.33 16 8 C -0.33 -9.21 6.51 24.10 0.16 -9.05 16 9 C 0.58 20.94 7.61 86.43 0.66 21.60 16 10 O -0.55 -23.55 11.46 -4.34 -0.05 -23.60 16 11 N -0.64 -22.35 5.29 -306.73 -1.62 -23.98 16 12 C 0.01 0.65 6.30 38.61 0.24 0.89 16 13 C -0.12 -5.19 9.90 22.14 0.22 -4.97 16 14 C -0.16 -8.22 8.61 22.48 0.19 -8.03 16 15 C 0.07 3.91 5.55 -21.27 -0.12 3.80 16 16 C -0.50 -27.14 9.02 23.39 0.21 -26.93 16 17 H 0.07 3.90 7.85 -2.91 -0.02 3.88 16 18 C 0.03 1.46 5.42 85.24 0.46 1.92 16 19 N -0.84 -44.03 10.60 21.82 0.23 -43.80 16 20 Si 0.99 38.92 29.56 68.60 2.03 40.95 16 21 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 22 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 C -0.22 -11.41 9.74 22.48 0.22 -11.20 16 25 C -0.09 -4.45 8.61 22.14 0.19 -4.26 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.10 3.37 4.97 -2.39 -0.01 3.36 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.04 8.14 -2.39 -0.02 1.03 16 33 H 0.25 1.06 8.06 -2.91 -0.02 1.03 16 34 H 0.41 11.26 8.01 -92.71 -0.74 10.52 16 35 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 36 H 0.12 6.50 6.13 -2.91 -0.02 6.48 16 37 H 0.29 13.59 8.30 -92.71 -0.77 12.82 16 38 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 39 H 0.11 5.23 6.23 -2.91 -0.02 5.21 16 Total: -1.00 -67.37 341.84 3.24 -64.13 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.35 Total: 32.69 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 5.54 Total: -35.94 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -3.37 Total: -80.55 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.05 Total: -23.60 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.26 Total: 2.33 kcal Total: -67.37 3.24 -64.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448593664.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.638 kcal (2) G-P(sol) polarization free energy of solvation -67.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds