Wall clock time and date at job start Tue Mar 31 2020 11:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36089 * 116.99723 * 2 1 4 4 C 1.38841 * 119.98203 * 269.98246 * 3 2 1 5 5 F 1.35100 * 119.96042 * 359.97438 * 4 3 2 6 6 C 1.38340 * 120.07835 * 179.70057 * 4 3 2 7 7 C 1.38750 * 120.03975 * 0.59935 * 6 4 3 8 8 N 1.40359 * 120.01731 * 179.69864 * 7 6 4 9 9 C 1.34777 * 120.00160 * 34.64902 * 8 7 6 10 10 O 1.21596 * 120.00110 * 355.53810 * 9 8 7 11 11 N 1.34776 * 120.00188 * 175.54251 * 9 8 7 12 12 C 1.46498 * 120.00077 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47057 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99987 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99743 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00055 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47043 * 90.00070 * 17 15 13 19 19 H 1.48504 * 109.47250 * 210.00190 * 17 15 13 20 20 H 1.48503 * 109.47294 * 330.00065 * 17 15 13 21 21 C 1.39172 * 119.96380 * 359.42136 * 7 6 4 22 22 O 1.36079 * 120.04085 * 180.30096 * 21 7 6 23 23 C 1.42902 * 116.99768 * 89.99661 * 22 21 7 24 24 C 1.38677 * 119.91679 * 0.27975 * 21 7 6 25 25 F 1.35106 * 120.01511 * 179.97438 * 24 21 7 26 26 H 1.09004 * 109.46527 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47007 * 299.99288 * 1 2 3 28 28 H 1.08993 * 109.47422 * 59.99812 * 1 2 3 29 29 H 1.07999 * 119.97773 * 180.29485 * 6 4 3 30 30 H 0.96997 * 120.00099 * 214.64295 * 8 7 6 31 31 H 0.97002 * 119.99956 * 359.71709 * 11 9 8 32 32 H 1.09008 * 109.46629 * 299.99319 * 12 11 9 33 33 H 1.08996 * 109.47611 * 59.99061 * 12 11 9 34 34 H 0.96998 * 119.99716 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.46841 * 180.02562 * 23 22 21 36 36 H 1.08996 * 109.47608 * 300.00039 * 23 22 21 37 37 H 1.09002 * 109.47056 * 60.00825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2126 0.0000 4 6 2.3620 1.8306 -1.2026 5 9 2.0556 1.2273 -2.3719 6 6 2.9844 3.0661 -1.2049 7 6 3.3059 3.6842 -0.0050 8 7 3.9431 4.9348 -0.0080 9 6 3.6527 5.8368 -0.9663 10 8 2.9005 5.5387 -1.8740 11 7 4.1960 7.0693 -0.9187 12 6 3.8799 8.0500 -1.9601 13 6 4.6094 9.3376 -1.6756 14 1 5.2447 9.4176 -0.8059 15 6 4.4659 10.4136 -2.5258 16 7 3.6927 10.3160 -3.5852 17 14 5.3696 12.0098 -2.1729 18 1 6.6993 11.9823 -2.8336 19 1 4.5795 13.1525 -2.6978 20 1 5.5485 12.1637 -0.7067 21 6 2.9911 3.0660 1.2015 22 8 3.3002 3.6736 2.3792 23 6 2.3128 4.5409 2.9404 24 6 2.3616 1.8304 1.2019 25 9 2.0555 1.2283 2.3720 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.2247 3.5476 -2.1414 30 1 4.5925 5.1499 0.6797 31 1 4.7929 7.3085 -0.1924 32 1 4.1908 7.6625 -2.9304 33 1 2.8059 8.2358 -1.9702 34 1 3.5914 11.0730 -4.1831 35 1 2.6857 4.9589 3.8755 36 1 2.0994 5.3492 2.2411 37 1 1.4004 3.9764 3.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455834072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:14 Heat of formation + Delta-G solvation = -157.293417 kcal Electronic energy + Delta-G solvation = -26382.148434 eV Core-core repulsion = 21990.230903 eV Total energy + Delta-G solvation = -4391.917531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.19110 -49.07213 -40.80241 -39.30870 -38.76868 -36.76530 -34.50244 -34.19767 -32.44769 -30.17019 -29.53318 -27.49705 -27.15838 -26.47404 -23.71402 -22.96788 -22.24895 -20.60931 -18.98730 -18.70540 -18.43385 -17.69611 -17.03023 -16.77525 -16.44553 -15.96665 -15.85085 -15.60466 -15.22972 -15.08081 -15.01625 -14.82129 -14.71720 -14.61280 -14.19746 -13.56887 -13.32470 -13.07716 -12.70691 -12.43432 -12.10171 -12.09205 -11.89915 -11.73192 -11.06120 -10.97282 -10.66388 -10.42666 -10.31590 -10.08519 -9.67004 -9.50174 -8.87790 -8.83361 -8.38648 -7.96940 -6.25627 -4.33254 0.50978 0.63838 2.59659 2.70305 3.18949 3.24907 3.26198 3.27884 3.48224 3.56780 3.74601 4.09769 4.23330 4.56466 4.66774 4.94545 5.01183 5.01966 5.07665 5.11043 5.11137 5.18441 5.29860 5.39312 5.52851 5.58170 5.68809 6.14014 6.47676 6.77654 6.94537 7.14713 7.20448 7.35067 7.39175 7.65715 7.86830 8.50446 8.68576 8.95840 9.33560 10.84388 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.003034 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.206345 B = 9226.350075 C =10159.982814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.008 3.992 4 C 0.133 3.867 5 F -0.118 7.118 6 C -0.146 4.146 7 C 0.224 3.776 8 N -0.685 5.685 9 C 0.690 3.310 10 O -0.578 6.578 11 N -0.715 5.715 12 C 0.265 3.735 13 C -0.546 4.546 14 H 0.064 0.936 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.906 3.094 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.023 3.977 22 O -0.318 6.318 23 C 0.029 3.971 24 C 0.117 3.883 25 F -0.116 7.116 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.051 0.949 29 H 0.175 0.825 30 H 0.414 0.586 31 H 0.391 0.609 32 H 0.030 0.970 33 H 0.029 0.971 34 H 0.267 0.733 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 -16.235 11.500 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C -0.039 4.039 4 C 0.112 3.888 5 F -0.096 7.096 6 C -0.168 4.168 7 C 0.125 3.875 8 N -0.333 5.333 9 C 0.390 3.610 10 O -0.456 6.456 11 N -0.366 5.366 12 C 0.145 3.855 13 C -0.584 4.584 14 H 0.082 0.918 15 C -0.139 4.139 16 N -0.521 5.521 17 Si 0.733 3.267 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.026 4.026 22 O -0.235 6.235 23 C -0.065 4.065 24 C 0.095 3.905 25 F -0.094 7.094 26 H 0.118 0.882 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.193 0.807 30 H 0.250 0.750 31 H 0.224 0.776 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.061 -16.439 10.553 19.953 hybrid contribution 0.498 1.156 0.770 1.476 sum -3.563 -15.283 11.323 19.352 Atomic orbital electron populations 1.23143 0.78580 1.03760 1.01070 1.86182 1.20379 1.22614 1.94047 1.18261 1.05623 0.90085 0.89973 1.17434 0.99469 0.91309 0.80581 1.91540 1.90637 1.82576 1.44858 1.21324 1.02102 0.92762 1.00613 1.17185 0.94021 0.85200 0.91119 1.42834 1.45081 1.12812 1.32550 1.16166 0.81662 0.81225 0.81953 1.90899 1.40486 1.78723 1.35497 1.45820 1.49174 1.10833 1.30782 1.19121 0.96937 0.84409 0.85080 1.21181 1.29580 0.96727 1.10962 0.91801 1.24940 0.95188 0.99095 0.94689 1.69969 1.36935 1.31832 1.13343 0.86387 0.79540 0.82227 0.78592 1.20393 1.20957 1.19733 1.18059 1.05346 0.92973 0.86186 1.86131 1.41818 1.61724 1.33789 1.23142 0.91684 0.92789 0.98895 1.17593 0.99989 0.91774 0.81100 1.91514 1.90738 1.82470 1.44669 0.88214 0.93296 0.92989 0.80736 0.74959 0.77615 0.95248 0.95343 0.92313 0.88143 0.92850 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.13 101.05 1.13 1.39 16 2 O -0.32 -4.03 10.14 -20.02 -0.20 -4.23 16 3 C 0.01 0.10 5.73 -39.17 -0.22 -0.12 16 4 C 0.13 1.85 7.30 -39.32 -0.29 1.57 16 5 F -0.12 -1.68 17.10 2.25 0.04 -1.64 16 6 C -0.15 -2.17 8.67 -39.35 -0.34 -2.51 16 7 C 0.22 3.15 6.33 -83.42 -0.53 2.62 16 8 N -0.68 -9.61 5.20 -14.07 -0.07 -9.68 16 9 C 0.69 12.73 8.41 -86.92 -0.73 12.00 16 10 O -0.58 -12.75 13.76 5.28 0.07 -12.68 16 11 N -0.72 -13.78 5.55 -66.41 -0.37 -14.14 16 12 C 0.27 6.59 5.43 -5.19 -0.03 6.56 16 13 C -0.55 -14.06 9.28 -34.44 -0.32 -14.38 16 14 H 0.06 1.53 7.60 -52.49 -0.40 1.13 16 15 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 16 N -0.88 -25.11 13.29 55.43 0.74 -24.37 16 17 Si 0.91 20.11 29.54 -169.99 -5.02 15.09 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 C 0.02 0.30 5.74 -39.07 -0.22 0.07 16 22 O -0.32 -3.80 9.83 -19.99 -0.20 -3.99 16 23 C 0.03 0.28 11.13 101.05 1.13 1.40 16 24 C 0.12 1.52 7.31 -39.23 -0.29 1.24 16 25 F -0.12 -1.50 16.95 2.25 0.04 -1.47 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.18 2.90 6.19 -52.49 -0.32 2.58 16 30 H 0.41 4.64 8.58 -40.82 -0.35 4.29 16 31 H 0.39 6.31 8.34 -40.82 -0.34 5.97 16 32 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -30.80 338.77 -4.62 -35.42 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.93 Total: 5.13 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -0.82 Total: 11.48 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.29 Total: -48.20 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.33 Total: -20.91 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.08 Total: -3.11 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.80 -4.62 -35.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455834072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.877 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds