Wall clock time and date at job start Tue Mar 31 2020 11:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36089 * 116.99723 * 2 1 4 4 C 1.38841 * 119.98203 * 269.98246 * 3 2 1 5 5 F 1.35100 * 119.96042 * 359.97438 * 4 3 2 6 6 C 1.38340 * 120.07835 * 179.70057 * 4 3 2 7 7 C 1.38750 * 120.03975 * 0.59935 * 6 4 3 8 8 N 1.40359 * 120.01731 * 179.69864 * 7 6 4 9 9 C 1.34777 * 120.00160 * 34.64902 * 8 7 6 10 10 O 1.21596 * 120.00110 * 355.53810 * 9 8 7 11 11 N 1.34776 * 120.00188 * 175.54251 * 9 8 7 12 12 C 1.46498 * 120.00077 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47057 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00249 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99987 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99743 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00055 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47043 * 90.00070 * 17 15 13 19 19 H 1.48504 * 109.47250 * 210.00190 * 17 15 13 20 20 H 1.48503 * 109.47294 * 330.00065 * 17 15 13 21 21 C 1.39172 * 119.96380 * 359.42136 * 7 6 4 22 22 O 1.36079 * 120.04085 * 180.30096 * 21 7 6 23 23 C 1.42902 * 116.99768 * 89.99661 * 22 21 7 24 24 C 1.38677 * 119.91679 * 0.27975 * 21 7 6 25 25 F 1.35106 * 120.01511 * 179.97438 * 24 21 7 26 26 H 1.09004 * 109.46527 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47007 * 299.99288 * 1 2 3 28 28 H 1.08993 * 109.47422 * 59.99812 * 1 2 3 29 29 H 1.07999 * 119.97773 * 180.29485 * 6 4 3 30 30 H 0.96997 * 120.00099 * 214.64295 * 8 7 6 31 31 H 0.97002 * 119.99956 * 359.71709 * 11 9 8 32 32 H 1.09008 * 109.46629 * 299.99319 * 12 11 9 33 33 H 1.08996 * 109.47611 * 59.99061 * 12 11 9 34 34 H 0.96998 * 119.99716 * 179.97438 * 16 15 13 35 35 H 1.09000 * 109.46841 * 180.02562 * 23 22 21 36 36 H 1.08996 * 109.47608 * 300.00039 * 23 22 21 37 37 H 1.09002 * 109.47056 * 60.00825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2126 0.0000 4 6 2.3620 1.8306 -1.2026 5 9 2.0556 1.2273 -2.3719 6 6 2.9844 3.0661 -1.2049 7 6 3.3059 3.6842 -0.0050 8 7 3.9431 4.9348 -0.0080 9 6 3.6527 5.8368 -0.9663 10 8 2.9005 5.5387 -1.8740 11 7 4.1960 7.0693 -0.9187 12 6 3.8799 8.0500 -1.9601 13 6 4.6094 9.3376 -1.6756 14 1 5.2447 9.4176 -0.8059 15 6 4.4659 10.4136 -2.5258 16 7 3.6927 10.3160 -3.5852 17 14 5.3696 12.0098 -2.1729 18 1 6.6993 11.9823 -2.8336 19 1 4.5795 13.1525 -2.6978 20 1 5.5485 12.1637 -0.7067 21 6 2.9911 3.0660 1.2015 22 8 3.3002 3.6736 2.3792 23 6 2.3128 4.5409 2.9404 24 6 2.3616 1.8304 1.2019 25 9 2.0555 1.2283 2.3720 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.2247 3.5476 -2.1414 30 1 4.5925 5.1499 0.6797 31 1 4.7929 7.3085 -0.1924 32 1 4.1908 7.6625 -2.9304 33 1 2.8059 8.2358 -1.9702 34 1 3.5914 11.0730 -4.1831 35 1 2.6857 4.9589 3.8755 36 1 2.0994 5.3492 2.2411 37 1 1.4004 3.9764 3.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455834072.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:13 Heat of formation + Delta-G solvation = -179.366722 kcal Electronic energy + Delta-G solvation = -26383.105605 eV Core-core repulsion = 21990.230903 eV Total energy + Delta-G solvation = -4392.874702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.23776 -50.19087 -42.04229 -40.56928 -39.78188 -37.87032 -36.22771 -35.57943 -34.33709 -31.25030 -30.70458 -29.12886 -27.99424 -27.55751 -25.18743 -24.29002 -23.60138 -22.10430 -20.32016 -19.88454 -19.52770 -18.94037 -18.19387 -17.93799 -17.75343 -17.42773 -17.01214 -16.71561 -16.63123 -16.37572 -16.24115 -16.01434 -15.75024 -15.72379 -15.52425 -14.99713 -14.65959 -14.20091 -14.08232 -14.04890 -13.66787 -13.21095 -12.91340 -12.81474 -12.70435 -12.68855 -12.21985 -11.64358 -11.53457 -11.46948 -11.21443 -11.04723 -10.80800 -10.02080 -9.91443 -9.33398 -8.28174 -6.43946 -0.57359 -0.45527 1.33101 1.47034 1.47283 1.55147 1.58807 2.03628 2.25039 2.39007 2.54257 2.66015 3.00116 3.07842 3.18827 3.57501 3.80558 3.97454 4.30890 4.33661 4.34713 4.38033 4.43019 4.48190 4.55594 4.69784 4.75081 4.95559 5.05464 5.26598 5.27914 5.42992 5.56202 5.81826 6.00166 6.01449 6.16135 6.66274 7.03709 7.25002 7.46953 8.83688 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.003034 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.206345 B = 9226.350075 C =10159.982814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.330 6.330 3 C 0.021 3.979 4 C 0.126 3.874 5 F -0.122 7.122 6 C -0.151 4.151 7 C 0.210 3.790 8 N -0.663 5.663 9 C 0.695 3.305 10 O -0.617 6.617 11 N -0.708 5.708 12 C 0.284 3.716 13 C -0.555 4.555 14 H 0.085 0.915 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.982 3.018 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.255 1.255 21 C 0.042 3.958 22 O -0.322 6.322 23 C 0.024 3.976 24 C 0.115 3.885 25 F -0.112 7.112 26 H 0.127 0.873 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.153 0.847 30 H 0.430 0.570 31 H 0.409 0.591 32 H -0.007 1.007 33 H -0.007 1.007 34 H 0.269 0.731 35 H 0.129 0.871 36 H 0.045 0.955 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.902 -16.320 13.988 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.247 6.247 3 C -0.026 4.026 4 C 0.105 3.895 5 F -0.101 7.101 6 C -0.172 4.172 7 C 0.111 3.889 8 N -0.313 5.313 9 C 0.396 3.604 10 O -0.497 6.497 11 N -0.361 5.361 12 C 0.161 3.839 13 C -0.593 4.593 14 H 0.103 0.897 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.805 3.195 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.179 1.179 21 C -0.006 4.006 22 O -0.239 6.239 23 C -0.069 4.069 24 C 0.094 3.906 25 F -0.090 7.090 26 H 0.145 0.855 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.171 0.829 30 H 0.270 0.730 31 H 0.245 0.755 32 H 0.011 0.989 33 H 0.011 0.989 34 H 0.077 0.923 35 H 0.147 0.853 36 H 0.064 0.936 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.397 -16.570 13.120 21.407 hybrid contribution 0.213 1.028 0.053 1.051 sum -3.184 -15.542 13.173 20.621 Atomic orbital electron populations 1.23419 0.76472 1.05787 1.01518 1.86149 1.22344 1.22148 1.94058 1.18259 1.04795 0.89909 0.89680 1.17390 1.00067 0.91237 0.80815 1.91524 1.90757 1.82607 1.45192 1.21149 1.02679 0.93256 1.00162 1.17168 0.95198 0.85107 0.91382 1.42379 1.45123 1.12051 1.31704 1.16152 0.80902 0.81292 0.82090 1.90886 1.42084 1.79413 1.37311 1.45334 1.49933 1.10498 1.30350 1.18528 0.94681 0.85597 0.85081 1.21588 1.29431 0.96746 1.11487 0.89671 1.25991 0.95916 1.03124 0.94309 1.70126 1.38833 1.33087 1.14701 0.85195 0.77937 0.77073 0.79249 1.19798 1.21179 1.17891 1.17941 1.03786 0.92721 0.86173 1.86125 1.42729 1.62017 1.33010 1.23366 0.91744 0.92177 0.99636 1.17520 1.00202 0.91781 0.81083 1.91524 1.90716 1.82408 1.44402 0.85518 0.92429 0.92968 0.82898 0.73007 0.75478 0.98882 0.98897 0.92258 0.85337 0.93634 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.13 113.37 1.26 1.62 16 2 O -0.33 -7.94 10.14 -94.56 -0.96 -8.90 16 3 C 0.02 0.53 5.73 22.54 0.13 0.66 16 4 C 0.13 3.51 7.30 22.44 0.16 3.67 16 5 F -0.12 -3.54 17.10 44.97 0.77 -2.77 16 6 C -0.15 -4.54 8.67 22.42 0.19 -4.35 16 7 C 0.21 5.78 6.33 38.12 0.24 6.02 16 8 N -0.66 -18.13 5.20 -316.70 -1.65 -19.78 16 9 C 0.70 25.96 8.41 179.05 1.51 27.46 16 10 O -0.62 -28.26 13.76 -4.02 -0.06 -28.32 16 11 N -0.71 -27.39 5.55 -482.28 -2.68 -30.06 16 12 C 0.28 14.58 5.43 85.63 0.46 15.05 16 13 C -0.55 -28.48 9.28 25.60 0.24 -28.24 16 14 H 0.09 3.92 7.60 -2.91 -0.02 3.89 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -54.04 13.29 21.45 0.28 -53.75 16 17 Si 0.98 40.69 29.54 68.60 2.03 42.71 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 19 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 20 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 21 C 0.04 1.03 5.74 22.60 0.13 1.16 16 22 O -0.32 -6.90 9.83 -94.45 -0.93 -7.83 16 23 C 0.02 0.40 11.13 113.37 1.26 1.66 16 24 C 0.12 2.82 7.31 22.50 0.16 2.99 16 25 F -0.11 -2.67 16.95 44.97 0.76 -1.91 16 26 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.15 5.36 6.19 -2.91 -0.02 5.35 16 30 H 0.43 8.88 8.58 -92.71 -0.80 8.08 16 31 H 0.41 12.69 8.34 -92.71 -0.77 11.91 16 32 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -67.64 338.77 3.38 -64.26 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -0.41 Total: 17.82 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 6.22 Total: 28.51 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.04 Total: -103.60 kcal Atomic # 8 Polarization: -43.10 SS G_CDS: -1.94 Total: -45.05 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 1.53 Total: -4.68 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.71 kcal Total: -67.64 3.38 -64.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455834072.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.104 kcal (2) G-P(sol) polarization free energy of solvation -67.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds