Wall clock time and date at job start Tue Mar 31 2020 11:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35978 * 117.00468 * 2 1 4 4 C 1.38722 * 119.97082 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.11583 * 180.27503 * 4 3 2 6 6 C 1.38517 * 120.06661 * 359.45123 * 5 4 3 7 7 O 1.36057 * 120.02147 * 180.27833 * 6 5 4 8 8 C 1.42903 * 117.00472 * 0.29047 * 7 6 5 9 9 F 1.39902 * 109.46769 * 300.00317 * 8 7 6 10 10 F 1.39895 * 109.46739 * 60.00327 * 8 7 6 11 11 C 1.39262 * 119.94577 * 0.56484 * 6 5 4 12 12 N 1.40154 * 120.05559 * 179.68414 * 11 6 5 13 13 C 1.34775 * 120.00374 * 204.80414 * 12 11 6 14 14 O 1.21599 * 119.99517 * 5.63691 * 13 12 11 15 15 N 1.34769 * 120.00436 * 185.63684 * 13 12 11 16 16 C 1.46507 * 119.99792 * 179.97438 * 15 13 12 17 17 C 1.50711 * 109.46654 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99957 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99512 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00409 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99772 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46826 * 119.99989 * 21 19 17 24 24 H 1.48499 * 109.47403 * 240.00154 * 21 19 17 25 25 C 1.38628 * 119.97509 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47020 * 300.00204 * 1 2 3 27 27 H 1.08999 * 109.47398 * 59.99733 * 1 2 3 28 28 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.94160 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.96258 * 179.69738 * 5 4 3 31 31 H 1.08998 * 109.46971 * 180.02562 * 8 7 6 32 32 H 0.97000 * 120.00421 * 24.80348 * 12 11 6 33 33 H 0.96998 * 120.00210 * 0.02562 * 15 13 12 34 34 H 1.09003 * 109.47154 * 299.99539 * 16 15 13 35 35 H 1.08997 * 109.47379 * 60.00524 * 16 15 13 36 36 H 0.96998 * 120.00505 * 180.02562 * 20 19 17 37 37 H 1.07998 * 120.03691 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2903 2.3746 0.0005 5 6 1.9149 3.6079 -0.0052 6 6 3.2979 3.6854 0.0000 7 8 3.9116 4.8997 0.0000 8 6 3.0680 6.0531 0.0011 9 9 2.2596 6.0405 -1.1407 10 9 2.2613 6.0397 1.1439 11 6 4.0595 2.5195 -0.0009 12 7 5.4590 2.5953 -0.0024 13 6 6.1888 1.5739 -0.4929 14 8 5.6347 0.6324 -1.0270 15 7 7.5324 1.5959 -0.3914 16 6 8.3255 0.4852 -0.9241 17 6 9.7892 0.7528 -0.6844 18 1 10.0977 1.6596 -0.1855 19 6 10.7342 -0.1602 -1.1019 20 7 10.3586 -1.2642 -1.7098 21 14 12.5485 0.1718 -0.8055 22 1 12.7060 1.4736 -0.1085 23 1 13.1189 -0.9114 0.0351 24 1 13.2626 0.2169 -2.1067 25 6 3.4308 1.2834 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 0.2119 2.3165 0.0005 30 1 1.3239 4.5118 -0.0097 31 1 3.6830 6.9530 0.0006 32 1 5.9025 3.3829 0.3496 33 1 7.9744 2.3467 0.0350 34 1 8.0387 -0.4393 -0.4229 35 1 8.1439 0.3896 -1.9946 36 1 11.0234 -1.9067 -2.0033 37 1 4.0191 0.3777 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487869201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:48 Heat of formation + Delta-G solvation = -176.709121 kcal Electronic energy + Delta-G solvation = -26102.722627 eV Core-core repulsion = 21709.963167 eV Total energy + Delta-G solvation = -4392.759459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.58173 -47.57113 -40.79197 -39.34985 -38.88950 -36.51959 -34.47289 -34.07308 -32.38210 -30.40931 -29.27771 -27.41771 -26.89886 -26.08222 -23.54897 -22.54762 -21.80272 -20.32421 -19.23498 -18.77001 -18.24821 -18.12930 -17.93116 -16.44362 -16.13903 -15.86424 -15.76501 -15.59746 -14.99180 -14.78668 -14.63140 -14.20288 -14.10582 -13.99173 -13.88822 -13.59522 -13.47183 -13.14227 -12.81607 -12.41196 -12.23605 -12.16037 -12.01721 -11.99204 -11.19957 -11.01072 -10.94569 -10.87957 -10.31457 -10.17507 -9.42097 -9.39060 -8.77218 -8.32241 -7.97847 -7.61858 -6.17677 -4.24664 1.26291 1.33726 2.36962 2.95014 3.21446 3.23436 3.30382 3.33134 3.39394 3.50092 3.93416 4.05849 4.30954 4.40567 4.64828 4.78601 4.92976 4.96458 5.04741 5.08474 5.18771 5.36025 5.37246 5.65213 5.80515 6.05365 6.26644 6.36049 6.63623 6.98934 7.02105 7.37221 7.43284 7.48524 7.51275 7.79837 7.97184 8.66064 8.81127 9.14887 9.42200 10.92497 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.003178 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.898814 B = 8808.476242 C =10418.661230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.132 3.868 4 C -0.205 4.205 5 C -0.127 4.127 6 C 0.023 3.977 7 O -0.321 6.321 8 C 0.413 3.587 9 F -0.200 7.200 10 F -0.201 7.201 11 C 0.219 3.781 12 N -0.683 5.683 13 C 0.690 3.310 14 O -0.577 6.577 15 N -0.719 5.719 16 C 0.265 3.735 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.905 3.095 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.139 4.139 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.180 0.820 32 H 0.409 0.591 33 H 0.389 0.611 34 H 0.029 0.971 35 H 0.028 0.972 36 H 0.266 0.734 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.040 14.102 5.625 24.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.086 3.914 4 C -0.225 4.225 5 C -0.146 4.146 6 C -0.023 4.023 7 O -0.239 6.239 8 C 0.323 3.677 9 F -0.182 7.182 10 F -0.183 7.183 11 C 0.120 3.880 12 N -0.330 5.330 13 C 0.390 3.610 14 O -0.455 6.455 15 N -0.370 5.370 16 C 0.144 3.856 17 C -0.582 4.582 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.149 0.851 30 H 0.153 0.847 31 H 0.196 0.804 32 H 0.244 0.756 33 H 0.222 0.778 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.060 12.833 5.027 23.522 hybrid contribution 0.790 1.151 0.421 1.458 sum -18.270 13.984 5.448 23.644 Atomic orbital electron populations 1.23044 0.78698 1.03849 1.01149 1.86136 1.21007 1.26534 1.88703 1.18743 0.91761 0.84133 0.96811 1.20897 0.99959 0.91339 1.10284 1.20965 0.91794 0.99063 1.02779 1.18269 0.91259 0.82860 1.09873 1.86545 1.35206 1.12479 1.89648 1.23302 0.81126 0.91541 0.71740 1.93094 1.76091 1.96818 1.52208 1.93087 1.76254 1.96831 1.52165 1.16433 0.82211 0.90066 0.99244 1.42720 1.03488 1.21691 1.65131 1.16156 0.82735 0.82381 0.79706 1.90870 1.70516 1.35074 1.48993 1.45793 1.03152 1.26233 1.61829 1.19096 0.88476 0.83363 0.94682 1.21239 0.90424 1.06385 1.40115 0.91799 1.24942 0.99598 0.94754 0.94688 1.69983 1.34368 1.09485 1.38309 0.86345 0.84129 0.78313 0.78009 1.19649 1.20786 1.20797 1.20594 0.91675 0.98355 1.05369 0.92792 0.92729 0.88295 0.85120 0.84686 0.80409 0.75551 0.77804 0.95329 0.95380 0.92445 0.81267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.38 10.50 -19.67 -0.21 -4.58 16 3 C 0.13 1.96 6.68 -39.26 -0.26 1.70 16 4 C -0.20 -2.55 9.03 -39.40 -0.36 -2.91 16 5 C -0.13 -1.60 8.25 -39.48 -0.33 -1.92 16 6 C 0.02 0.31 6.50 -39.10 -0.25 0.06 16 7 O -0.32 -3.64 9.84 -19.92 -0.20 -3.84 16 8 C 0.41 3.29 5.98 101.05 0.60 3.90 16 9 F -0.20 -1.94 15.56 2.25 0.04 -1.91 16 10 F -0.20 -1.83 15.60 2.25 0.04 -1.80 16 11 C 0.22 3.54 6.44 -83.51 -0.54 3.01 16 12 N -0.68 -11.06 5.29 -14.12 -0.07 -11.13 16 13 C 0.69 14.19 8.37 -86.93 -0.73 13.46 16 14 O -0.58 -14.02 13.51 5.28 0.07 -13.95 16 15 N -0.72 -15.05 5.55 -66.40 -0.37 -15.42 16 16 C 0.26 6.94 5.43 -5.18 -0.03 6.92 16 17 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.86 13.29 55.43 0.74 -25.13 16 21 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C -0.14 -2.40 8.65 -39.27 -0.34 -2.74 16 26 H 0.05 0.39 7.66 -51.92 -0.40 0.00 16 27 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.13 1.24 6.28 -52.49 -0.33 0.91 16 30 H 0.14 1.48 5.09 -52.49 -0.27 1.22 16 31 H 0.18 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.41 5.31 8.36 -40.82 -0.34 4.97 16 33 H 0.39 6.88 8.34 -40.82 -0.34 6.54 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.17 3.40 5.79 -52.49 -0.30 3.09 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -33.92 327.54 -5.31 -39.23 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -3.60 Total: 8.44 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -1.65 Total: 9.50 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.29 Total: -51.68 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.33 Total: -22.37 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.07 Total: -3.70 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.92 -5.31 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487869201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.479 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds