Wall clock time and date at job start Tue Mar 31 2020 11:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35978 * 117.00468 * 2 1 4 4 C 1.38722 * 119.97082 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.11583 * 180.27503 * 4 3 2 6 6 C 1.38517 * 120.06661 * 359.45123 * 5 4 3 7 7 O 1.36057 * 120.02147 * 180.27833 * 6 5 4 8 8 C 1.42903 * 117.00472 * 0.29047 * 7 6 5 9 9 F 1.39902 * 109.46769 * 300.00317 * 8 7 6 10 10 F 1.39895 * 109.46739 * 60.00327 * 8 7 6 11 11 C 1.39262 * 119.94577 * 0.56484 * 6 5 4 12 12 N 1.40154 * 120.05559 * 179.68414 * 11 6 5 13 13 C 1.34775 * 120.00374 * 204.80414 * 12 11 6 14 14 O 1.21599 * 119.99517 * 5.63691 * 13 12 11 15 15 N 1.34769 * 120.00436 * 185.63684 * 13 12 11 16 16 C 1.46507 * 119.99792 * 179.97438 * 15 13 12 17 17 C 1.50711 * 109.46654 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99957 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99512 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00409 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99772 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46826 * 119.99989 * 21 19 17 24 24 H 1.48499 * 109.47403 * 240.00154 * 21 19 17 25 25 C 1.38628 * 119.97509 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47020 * 300.00204 * 1 2 3 27 27 H 1.08999 * 109.47398 * 59.99733 * 1 2 3 28 28 H 1.08999 * 109.47540 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.94160 * 359.97438 * 4 3 2 30 30 H 1.08002 * 119.96258 * 179.69738 * 5 4 3 31 31 H 1.08998 * 109.46971 * 180.02562 * 8 7 6 32 32 H 0.97000 * 120.00421 * 24.80348 * 12 11 6 33 33 H 0.96998 * 120.00210 * 0.02562 * 15 13 12 34 34 H 1.09003 * 109.47154 * 299.99539 * 16 15 13 35 35 H 1.08997 * 109.47379 * 60.00524 * 16 15 13 36 36 H 0.96998 * 120.00505 * 180.02562 * 20 19 17 37 37 H 1.07998 * 120.03691 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2903 2.3746 0.0005 5 6 1.9149 3.6079 -0.0052 6 6 3.2979 3.6854 0.0000 7 8 3.9116 4.8997 0.0000 8 6 3.0680 6.0531 0.0011 9 9 2.2596 6.0405 -1.1407 10 9 2.2613 6.0397 1.1439 11 6 4.0595 2.5195 -0.0009 12 7 5.4590 2.5953 -0.0024 13 6 6.1888 1.5739 -0.4929 14 8 5.6347 0.6324 -1.0270 15 7 7.5324 1.5959 -0.3914 16 6 8.3255 0.4852 -0.9241 17 6 9.7892 0.7528 -0.6844 18 1 10.0977 1.6596 -0.1855 19 6 10.7342 -0.1602 -1.1019 20 7 10.3586 -1.2642 -1.7098 21 14 12.5485 0.1718 -0.8055 22 1 12.7060 1.4736 -0.1085 23 1 13.1189 -0.9114 0.0351 24 1 13.2626 0.2169 -2.1067 25 6 3.4308 1.2834 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 0.2119 2.3165 0.0005 30 1 1.3239 4.5118 -0.0097 31 1 3.6830 6.9530 0.0006 32 1 5.9025 3.3829 0.3496 33 1 7.9744 2.3467 0.0350 34 1 8.0387 -0.4393 -0.4229 35 1 8.1439 0.3896 -1.9946 36 1 11.0234 -1.9067 -2.0033 37 1 4.0191 0.3777 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487869201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:48 Heat of formation + Delta-G solvation = -202.792385 kcal Electronic energy + Delta-G solvation = -26103.853682 eV Core-core repulsion = 21709.963167 eV Total energy + Delta-G solvation = -4393.890515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.107 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.25165 -48.24475 -42.03229 -40.73304 -39.88525 -37.65400 -36.22715 -35.61382 -34.36586 -31.55094 -30.50833 -28.96049 -28.05380 -26.83571 -25.17435 -23.98071 -23.00163 -21.94498 -20.28023 -19.81298 -19.71464 -18.82885 -18.78718 -18.11672 -17.44056 -17.25300 -16.72457 -16.58082 -16.55749 -16.38198 -15.75658 -15.55143 -15.20450 -14.96083 -14.79913 -14.67999 -14.58275 -14.38512 -14.14029 -14.05816 -13.71239 -13.25490 -13.13863 -12.87840 -12.85361 -12.75547 -12.25226 -12.19941 -12.02884 -11.44557 -11.35839 -11.08598 -10.81363 -9.97957 -9.45243 -8.78683 -8.28005 -6.44435 0.10161 0.23384 1.43651 1.46344 1.51618 1.59903 1.65172 2.01802 2.34363 2.41246 2.59073 2.64059 3.07457 3.34122 3.53187 3.68729 3.76404 3.88060 4.00000 4.23712 4.41139 4.42527 4.51091 4.61728 4.74192 5.01356 5.05902 5.08613 5.25133 5.25712 5.43602 5.45254 5.61660 5.82256 5.91377 6.10662 6.42417 6.66233 7.10336 7.25240 7.53156 8.84477 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.003178 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.898814 B = 8808.476242 C =10418.661230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.123 3.877 4 C -0.188 4.188 5 C -0.125 4.125 6 C 0.033 3.967 7 O -0.327 6.327 8 C 0.408 3.592 9 F -0.210 7.210 10 F -0.207 7.207 11 C 0.191 3.809 12 N -0.663 5.663 13 C 0.691 3.309 14 O -0.619 6.619 15 N -0.711 5.711 16 C 0.283 3.717 17 C -0.554 4.554 18 H 0.086 0.914 19 C 0.004 3.996 20 N -0.930 5.930 21 Si 0.986 3.014 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.279 1.279 25 C -0.167 4.167 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.116 0.884 29 H 0.167 0.833 30 H 0.158 0.842 31 H 0.235 0.765 32 H 0.426 0.574 33 H 0.408 0.592 34 H -0.009 1.009 35 H -0.010 1.010 36 H 0.269 0.731 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.710 17.205 6.582 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.253 6.253 3 C 0.077 3.923 4 C -0.207 4.207 5 C -0.144 4.144 6 C -0.013 4.013 7 O -0.245 6.245 8 C 0.319 3.681 9 F -0.192 7.192 10 F -0.189 7.189 11 C 0.094 3.906 12 N -0.312 5.312 13 C 0.392 3.608 14 O -0.500 6.500 15 N -0.365 5.365 16 C 0.160 3.840 17 C -0.592 4.592 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.810 3.190 22 H -0.176 1.176 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.189 4.189 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.134 0.866 29 H 0.184 0.816 30 H 0.175 0.825 31 H 0.250 0.750 32 H 0.264 0.736 33 H 0.244 0.756 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.078 0.922 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.777 16.020 6.026 26.155 hybrid contribution 0.773 0.217 0.131 0.814 sum -19.004 16.237 6.158 25.743 Atomic orbital electron populations 1.23417 0.75950 1.05704 1.02707 1.86109 1.23938 1.26571 1.88656 1.18784 0.91095 0.85424 0.97028 1.21254 1.01564 0.90160 1.07745 1.21300 0.91414 0.99960 1.01679 1.18235 0.91484 0.83227 1.08369 1.86555 1.36344 1.12286 1.89349 1.24245 0.81369 0.91575 0.70931 1.93076 1.76510 1.96755 1.52824 1.93077 1.76552 1.96748 1.52486 1.16548 0.81811 0.90895 1.01372 1.42300 1.03670 1.20871 1.64335 1.16231 0.82525 0.82709 0.79353 1.90857 1.71287 1.37103 1.50765 1.45332 1.03272 1.25699 1.62149 1.18522 0.89632 0.83694 0.92102 1.21617 0.90318 1.07202 1.40059 0.89638 1.26054 1.05180 0.94250 0.94052 1.70146 1.36358 1.10815 1.39567 0.85087 0.77092 0.78893 0.77972 1.17570 1.20531 1.20501 1.20415 0.93033 0.97627 1.07837 0.90846 0.91331 0.86570 0.81552 0.82460 0.74962 0.73583 0.75624 0.99150 0.99192 0.92225 0.85202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -9.65 10.50 -93.30 -0.98 -10.63 16 3 C 0.12 3.69 6.68 22.48 0.15 3.84 16 4 C -0.19 -4.27 9.03 22.39 0.20 -4.07 16 5 C -0.12 -2.83 8.25 22.34 0.18 -2.65 16 6 C 0.03 0.86 6.50 22.58 0.15 1.00 16 7 O -0.33 -6.61 9.84 -94.20 -0.93 -7.54 16 8 C 0.41 5.02 5.98 113.37 0.68 5.70 16 9 F -0.21 -3.39 15.56 44.97 0.70 -2.69 16 10 F -0.21 -3.05 15.60 44.97 0.70 -2.35 16 11 C 0.19 6.29 6.44 38.16 0.25 6.54 16 12 N -0.66 -21.91 5.29 -316.84 -1.68 -23.59 16 13 C 0.69 29.89 8.37 179.06 1.50 31.39 16 14 O -0.62 -32.47 13.51 -4.03 -0.05 -32.52 16 15 N -0.71 -30.84 5.55 -482.26 -2.68 -33.51 16 16 C 0.28 15.68 5.43 85.64 0.46 16.15 16 17 C -0.55 -30.03 9.28 25.60 0.24 -29.79 16 18 H 0.09 4.17 7.60 -2.91 -0.02 4.14 16 19 C 0.00 0.24 5.46 84.65 0.46 0.70 16 20 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 21 Si 0.99 42.19 29.54 68.60 2.03 44.21 16 22 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 25 C -0.17 -6.13 8.65 22.47 0.19 -5.94 16 26 H 0.07 0.87 7.66 -2.38 -0.02 0.86 16 27 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 28 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.17 2.52 6.28 -2.91 -0.02 2.50 16 30 H 0.16 2.89 5.09 -2.91 -0.01 2.87 16 31 H 0.23 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.43 10.79 8.36 -92.71 -0.77 10.02 16 33 H 0.41 14.37 8.34 -92.71 -0.77 13.60 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.13 5.78 5.79 -2.91 -0.02 5.76 16 Total: -1.00 -78.83 327.54 2.59 -76.24 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.38 Total: 24.02 kcal Atomic # 6 Polarization: 18.66 SS G_CDS: 5.58 Total: 24.23 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -4.07 Total: -112.99 kcal Atomic # 8 Polarization: -48.73 SS G_CDS: -1.96 Total: -50.69 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 1.40 Total: -5.03 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -78.83 2.59 -76.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487869201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.548 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds