Wall clock time and date at job start Tue Mar 31 2020 11:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47014 * 2 1 4 4 H 1.08999 * 109.47079 * 304.99870 * 3 2 1 5 5 C 1.50697 * 109.46894 * 185.00140 * 3 2 1 6 6 H 1.08004 * 119.99778 * 240.00153 * 5 3 2 7 7 C 1.37875 * 120.00348 * 59.99753 * 5 3 2 8 8 N 1.31516 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00182 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46933 * 60.00374 * 9 7 5 11 11 H 1.48498 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47293 * 300.00249 * 9 7 5 13 13 N 1.46497 * 109.46976 * 64.99962 * 3 2 1 14 14 C 1.34777 * 120.00045 * 274.99882 * 13 3 2 15 15 O 1.21667 * 120.00053 * 0.02562 * 14 13 3 16 16 C 1.46645 * 119.99900 * 180.02562 * 14 13 3 17 17 C 1.34898 * 120.00111 * 174.01100 * 16 14 13 18 18 C 1.46818 * 120.00022 * 350.64159 * 17 16 14 19 19 N 1.29329 * 124.87842 * 318.70005 * 18 17 16 20 20 C 1.33412 * 118.11753 * 179.97438 * 19 18 17 21 21 C 1.41511 * 128.77338 * 180.02562 * 20 19 18 22 22 C 1.35955 * 120.52139 * 179.97438 * 21 20 19 23 23 C 1.38936 * 120.84683 * 359.97438 * 22 21 20 24 24 C 1.37566 * 120.06721 * 0.04639 * 23 22 21 25 25 C 1.39465 * 120.03470 * 359.95338 * 24 23 22 26 26 S 1.75853 * 124.88687 * 138.39757 * 18 17 16 27 27 H 1.08998 * 109.47421 * 59.99979 * 1 2 3 28 28 H 1.09004 * 109.47009 * 299.99567 * 1 2 3 29 29 H 1.09000 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47017 * 119.99680 * 2 1 3 31 31 H 1.08994 * 109.47010 * 239.99884 * 2 1 3 32 32 H 0.96999 * 120.00104 * 179.97438 * 8 7 5 33 33 H 0.97005 * 120.00060 * 95.00474 * 13 3 2 34 34 H 1.08001 * 120.00036 * 354.00831 * 16 14 13 35 35 H 1.08007 * 120.00417 * 170.63944 * 17 16 14 36 36 H 1.08004 * 119.74307 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.57804 * 180.02562 * 22 21 20 38 38 H 1.08007 * 119.96421 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.98327 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3978 0.2177 -2.6509 12 1 6.4995 2.2814 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3421 2.6318 0.4314 16 6 0.0474 3.3205 2.6198 17 6 -1.1201 3.9919 2.6964 18 6 -1.9039 4.2426 1.4805 19 7 -1.4067 4.5934 0.3393 20 6 -2.2459 4.7859 -0.6797 21 6 -1.9516 5.1676 -2.0102 22 6 -2.9486 5.3163 -2.9225 23 6 -4.2747 5.0972 -2.5706 24 6 -4.5943 4.7256 -1.2853 25 6 -3.5873 4.5673 -0.3335 26 16 -3.6529 4.1017 1.3644 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9502 33 1 2.2720 2.1232 1.9978 34 1 0.6965 3.2661 3.4812 35 1 -1.4784 4.3450 3.6522 36 1 -0.9268 5.3414 -2.3036 37 1 -2.7067 5.6077 -3.9338 38 1 -5.0554 5.2191 -3.3069 39 1 -5.6255 4.5552 -1.0133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492601961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:33 Heat of formation + Delta-G solvation = 53.421834 kcal Electronic energy + Delta-G solvation = -23642.503806 eV Core-core repulsion = 20256.705974 eV Total energy + Delta-G solvation = -3385.797832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11830 -38.96716 -36.78763 -35.01985 -33.08460 -32.30306 -31.01819 -30.86463 -29.07776 -27.08208 -25.25206 -23.50510 -22.83704 -22.19670 -20.90105 -19.43523 -18.88857 -18.42201 -17.08490 -16.40784 -15.94352 -15.45805 -15.18379 -14.79605 -14.62017 -14.28710 -14.12317 -13.79468 -13.61053 -13.19032 -12.61959 -12.42670 -12.33818 -12.05410 -11.87467 -11.66570 -11.46549 -11.21665 -10.96270 -10.80397 -10.76631 -10.30093 -10.13440 -9.98326 -9.80777 -9.60025 -9.16893 -9.03845 -8.93875 -8.46192 -8.16058 -7.89082 -7.67983 -6.09360 -4.18569 0.31418 1.19632 1.28506 1.65879 1.91952 2.81767 3.26885 3.32189 3.33372 3.90439 4.03522 4.11479 4.19673 4.41957 4.70653 4.91585 5.04296 5.21170 5.23024 5.30650 5.42718 5.52364 5.67491 5.98535 6.06098 6.22421 6.26095 6.38580 6.41635 6.45898 6.48528 6.69686 6.80017 7.07060 7.24237 7.40848 7.52611 7.65575 7.78408 7.95235 7.98276 8.21798 8.73715 8.82652 9.23430 9.49187 10.95917 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.003924 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.265588 B = 7134.461881 C = 7990.217602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.126 4.126 3 C 0.273 3.727 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.701 5.701 14 C 0.518 3.482 15 O -0.522 6.522 16 C -0.128 4.128 17 C -0.055 4.055 18 C 0.159 3.841 19 N -0.400 5.400 20 C 0.101 3.899 21 C -0.055 4.055 22 C -0.115 4.115 23 C -0.107 4.107 24 C -0.079 4.079 25 C -0.171 4.171 26 S 0.029 5.971 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.020 0.980 30 H 0.030 0.970 31 H 0.098 0.902 32 H 0.264 0.736 33 H 0.387 0.613 34 H 0.139 0.861 35 H 0.150 0.850 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 8.734 6.595 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.349 5.349 14 C 0.303 3.697 15 O -0.400 6.400 16 C -0.155 4.155 17 C -0.079 4.079 18 C -0.123 4.123 19 N -0.110 5.110 20 C -0.022 4.022 21 C -0.076 4.076 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.102 4.102 25 C -0.290 4.290 26 S 0.287 5.713 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.074 0.926 33 H 0.219 0.781 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.158 8.384 6.381 17.648 hybrid contribution 1.588 -0.024 -0.500 1.665 sum -12.570 8.360 5.881 16.201 Atomic orbital electron populations 1.21811 0.98392 0.97797 1.01122 1.21927 0.92517 0.99914 1.02136 1.18728 0.94015 0.88999 0.81100 0.93319 1.21208 0.90814 1.38930 1.06256 0.92202 1.24874 0.98494 0.94848 0.95396 1.69890 1.35156 1.37655 1.09314 0.86536 0.85014 0.78293 0.77417 1.20185 1.21167 1.20204 1.46436 1.14328 1.55675 1.18432 1.18260 0.83372 0.80406 0.87679 1.90846 1.50828 1.58875 1.39443 1.23655 0.96065 0.96501 0.99324 1.21427 0.93692 0.99082 0.93671 1.25233 0.91460 1.00666 0.94924 1.66187 1.35215 1.12151 0.97484 1.19078 0.86718 1.01655 0.94701 1.20587 1.00476 0.97026 0.89514 1.20660 0.92502 1.00849 0.99598 1.21066 0.96711 0.99639 0.95422 1.20267 0.97348 1.00464 0.92095 1.23827 0.98466 1.08983 0.97708 1.84607 1.10324 1.71174 1.05191 0.93365 0.94340 0.96090 0.95143 0.88417 0.92579 0.78111 0.84335 0.83292 0.84807 0.85069 0.85162 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.76 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.95 11.29 55.43 0.63 -24.33 16 9 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 N -0.70 -14.47 5.02 -56.26 -0.28 -14.75 16 14 C 0.52 10.19 6.09 -12.87 -0.08 10.12 16 15 O -0.52 -11.99 9.71 5.22 0.05 -11.94 16 16 C -0.13 -1.82 10.07 -37.38 -0.38 -2.20 16 17 C -0.06 -0.72 10.22 -37.30 -0.38 -1.11 16 18 C 0.16 2.60 5.80 -15.14 -0.09 2.52 16 19 N -0.40 -7.65 7.65 -8.78 -0.07 -7.72 16 20 C 0.10 1.81 6.93 -85.18 -0.59 1.22 16 21 C -0.06 -0.88 10.06 -39.15 -0.39 -1.27 16 22 C -0.11 -1.44 9.93 -40.14 -0.40 -1.84 16 23 C -0.11 -1.22 10.04 -39.57 -0.40 -1.61 16 24 C -0.08 -1.01 10.07 -39.37 -0.40 -1.40 16 25 C -0.17 -2.68 6.55 -38.37 -0.25 -2.93 16 26 S 0.03 0.41 23.36 -107.50 -2.51 -2.10 16 27 H 0.05 1.20 7.84 -51.93 -0.41 0.79 16 28 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.39 6.86 8.52 -40.82 -0.35 6.51 16 34 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.13 2.11 8.06 -52.48 -0.42 1.68 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -32.70 340.09 -10.49 -43.19 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.67 Total: 7.33 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -3.73 Total: -10.51 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.28 Total: -46.80 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.05 Total: -11.94 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 0.41 SS G_CDS: -2.51 Total: -2.10 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.70 -10.49 -43.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492601961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.611 kcal (2) G-P(sol) polarization free energy of solvation -32.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds