Wall clock time and date at job start Tue Mar 31 2020 11:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47014 * 2 1 4 4 H 1.08999 * 109.47079 * 304.99870 * 3 2 1 5 5 C 1.50697 * 109.46894 * 185.00140 * 3 2 1 6 6 H 1.08004 * 119.99778 * 240.00153 * 5 3 2 7 7 C 1.37875 * 120.00348 * 59.99753 * 5 3 2 8 8 N 1.31516 * 119.99883 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00182 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46933 * 60.00374 * 9 7 5 11 11 H 1.48498 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47293 * 300.00249 * 9 7 5 13 13 N 1.46497 * 109.46976 * 64.99962 * 3 2 1 14 14 C 1.34777 * 120.00045 * 274.99882 * 13 3 2 15 15 O 1.21667 * 120.00053 * 0.02562 * 14 13 3 16 16 C 1.46645 * 119.99900 * 180.02562 * 14 13 3 17 17 C 1.34898 * 120.00111 * 174.01100 * 16 14 13 18 18 C 1.46818 * 120.00022 * 350.64159 * 17 16 14 19 19 N 1.29329 * 124.87842 * 318.70005 * 18 17 16 20 20 C 1.33412 * 118.11753 * 179.97438 * 19 18 17 21 21 C 1.41511 * 128.77338 * 180.02562 * 20 19 18 22 22 C 1.35955 * 120.52139 * 179.97438 * 21 20 19 23 23 C 1.38936 * 120.84683 * 359.97438 * 22 21 20 24 24 C 1.37566 * 120.06721 * 0.04639 * 23 22 21 25 25 C 1.39465 * 120.03470 * 359.95338 * 24 23 22 26 26 S 1.75853 * 124.88687 * 138.39757 * 18 17 16 27 27 H 1.08998 * 109.47421 * 59.99979 * 1 2 3 28 28 H 1.09004 * 109.47009 * 299.99567 * 1 2 3 29 29 H 1.09000 * 109.47042 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47017 * 119.99680 * 2 1 3 31 31 H 1.08994 * 109.47010 * 239.99884 * 2 1 3 32 32 H 0.96999 * 120.00104 * 179.97438 * 8 7 5 33 33 H 0.97005 * 120.00060 * 95.00474 * 13 3 2 34 34 H 1.08001 * 120.00036 * 354.00831 * 16 14 13 35 35 H 1.08007 * 120.00417 * 170.63944 * 17 16 14 36 36 H 1.08004 * 119.74307 * 0.02562 * 21 20 19 37 37 H 1.07995 * 119.57804 * 180.02562 * 22 21 20 38 38 H 1.08007 * 119.96421 * 180.02562 * 23 22 21 39 39 H 1.07997 * 119.98327 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1733 9 14 6.0050 0.8813 -1.3818 10 1 6.5975 0.1473 -0.2349 11 1 6.3978 0.2177 -2.6509 12 1 6.4995 2.2814 -1.3821 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3421 2.6318 0.4314 16 6 0.0474 3.3205 2.6198 17 6 -1.1201 3.9919 2.6964 18 6 -1.9039 4.2426 1.4805 19 7 -1.4067 4.5934 0.3393 20 6 -2.2459 4.7859 -0.6797 21 6 -1.9516 5.1676 -2.0102 22 6 -2.9486 5.3163 -2.9225 23 6 -4.2747 5.0972 -2.5706 24 6 -4.5943 4.7256 -1.2853 25 6 -3.5873 4.5673 -0.3335 26 16 -3.6529 4.1017 1.3644 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 3.8292 -0.0604 -2.9502 33 1 2.2720 2.1232 1.9978 34 1 0.6965 3.2661 3.4812 35 1 -1.4784 4.3450 3.6522 36 1 -0.9268 5.3414 -2.3036 37 1 -2.7067 5.6077 -3.9338 38 1 -5.0554 5.2191 -3.3069 39 1 -5.6255 4.5552 -1.0133 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492601961.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:32 Heat of formation + Delta-G solvation = 32.665672 kcal Electronic energy + Delta-G solvation = -23643.403861 eV Core-core repulsion = 20256.705974 eV Total energy + Delta-G solvation = -3386.697886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29180 -40.47566 -37.99412 -36.78865 -34.29986 -34.22325 -32.71932 -32.07743 -30.24455 -28.98831 -26.54169 -25.12268 -24.25177 -23.43408 -22.32401 -21.27402 -20.30632 -19.54753 -18.62492 -17.71889 -17.40721 -17.13766 -16.43613 -16.19704 -16.04918 -15.80286 -15.56674 -14.94797 -14.86205 -14.67783 -14.39650 -13.80630 -13.65166 -13.42456 -13.39401 -13.16822 -12.94620 -12.87224 -12.71373 -12.66385 -12.18582 -12.05353 -11.86582 -11.61482 -11.11050 -11.05505 -10.92814 -10.61265 -10.46096 -10.28836 -9.50876 -9.25772 -9.00121 -8.15919 -6.33446 -0.80820 0.08637 0.20397 0.55139 0.75837 1.43176 1.45465 1.53028 1.71519 2.36982 2.61170 2.77032 2.79690 3.08415 3.13745 3.63919 3.92863 4.07500 4.13472 4.29297 4.34134 4.45361 4.47857 4.53648 4.70592 4.73856 4.91612 4.97373 5.04279 5.16956 5.21885 5.25768 5.32683 5.41384 5.42740 5.56221 5.67882 5.80205 5.80895 5.99149 6.18139 6.75928 6.82786 7.11615 7.34887 7.73771 8.89277 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.016349 B = 0.003924 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.265588 B = 7134.461881 C = 7990.217602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C 0.286 3.714 4 H -0.011 1.011 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.702 5.702 14 C 0.507 3.493 15 O -0.559 6.559 16 C -0.140 4.140 17 C -0.037 4.037 18 C 0.132 3.868 19 N -0.445 5.445 20 C 0.061 3.939 21 C -0.093 4.093 22 C -0.106 4.106 23 C -0.096 4.096 24 C -0.083 4.083 25 C -0.195 4.195 26 S 0.070 5.930 27 H 0.016 0.984 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.068 0.932 32 H 0.264 0.736 33 H 0.403 0.597 34 H 0.187 0.813 35 H 0.204 0.796 36 H 0.114 0.886 37 H 0.161 0.839 38 H 0.175 0.825 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 9.186 8.335 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.157 4.157 3 C 0.182 3.818 4 H 0.007 0.993 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.187 1.187 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.295 3.705 15 O -0.439 6.439 16 C -0.166 4.166 17 C -0.060 4.060 18 C -0.149 4.149 19 N -0.157 5.157 20 C -0.061 4.061 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.105 4.105 25 C -0.314 4.314 26 S 0.328 5.672 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.237 0.763 34 H 0.205 0.795 35 H 0.221 0.779 36 H 0.133 0.867 37 H 0.178 0.822 38 H 0.193 0.807 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.266 8.853 8.169 19.446 hybrid contribution 1.777 -0.096 -1.146 2.117 sum -13.489 8.757 7.023 17.549 Atomic orbital electron populations 1.21603 0.97184 0.98647 0.99832 1.21757 0.93453 0.99362 1.01105 1.18203 0.93324 0.88822 0.81475 0.99305 1.21585 0.91591 1.38781 1.06705 0.91085 1.25780 1.03329 0.94385 0.94992 1.70061 1.37130 1.38492 1.09846 0.85439 0.79124 0.78402 0.77622 1.18693 1.21211 1.19786 1.46187 1.15517 1.56142 1.17339 1.19213 0.82307 0.79715 0.89290 1.90846 1.51774 1.59828 1.41471 1.23655 0.97515 0.97590 0.97855 1.22158 0.92366 0.97052 0.94438 1.25915 0.93193 1.00425 0.95369 1.66165 1.37002 1.13818 0.98727 1.19420 0.87974 1.03393 0.95275 1.20743 1.00749 0.99660 0.90272 1.21068 0.92539 0.98914 1.00107 1.21596 0.96996 0.97276 0.95799 1.20774 0.98160 0.99502 0.92076 1.24218 0.98359 1.09555 0.99229 1.84213 1.08281 1.70609 1.04100 0.96511 0.93685 0.93946 0.93954 0.91356 0.92717 0.76272 0.79546 0.77887 0.86746 0.82177 0.80727 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.85 16 2 C -0.12 -6.00 5.45 30.60 0.17 -5.83 16 3 C 0.29 15.09 2.24 44.25 0.10 15.19 16 4 H -0.01 -0.70 7.58 -2.39 -0.02 -0.72 16 5 C -0.55 -29.73 8.73 25.60 0.22 -29.50 16 6 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 7 C 0.02 0.82 5.29 84.65 0.45 1.27 16 8 N -0.92 -53.90 11.29 21.45 0.24 -53.65 16 9 Si 0.97 42.88 29.54 68.60 2.03 44.91 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 N -0.70 -29.51 5.02 -450.14 -2.26 -31.77 16 14 C 0.51 20.29 6.09 86.44 0.53 20.82 16 15 O -0.56 -26.99 9.71 -4.24 -0.04 -27.03 16 16 C -0.14 -3.70 10.07 23.70 0.24 -3.47 16 17 C -0.04 -0.90 10.22 23.75 0.24 -0.66 16 18 C 0.13 4.32 5.80 87.31 0.51 4.83 16 19 N -0.45 -17.89 7.65 -181.69 -1.39 -19.28 16 20 C 0.06 2.31 6.93 40.20 0.28 2.59 16 21 C -0.09 -3.18 10.06 22.55 0.23 -2.95 16 22 C -0.11 -2.60 9.93 21.91 0.22 -2.39 16 23 C -0.10 -1.95 10.04 22.28 0.22 -1.72 16 24 C -0.08 -1.96 10.07 22.41 0.23 -1.73 16 25 C -0.19 -6.10 6.55 23.05 0.15 -5.95 16 26 S 0.07 1.92 23.36 -56.49 -1.32 0.60 16 27 H 0.02 0.85 7.84 -2.39 -0.02 0.83 16 28 H 0.04 2.04 5.64 -2.38 -0.01 2.03 16 29 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 32 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.40 14.06 8.52 -92.70 -0.79 13.27 16 34 H 0.19 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 37 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -78.18 340.09 1.94 -76.24 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.29 Total: 24.35 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 4.39 Total: -14.35 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -3.41 Total: -104.71 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.04 Total: -27.03 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.32 Total: 0.60 kcal Total: -78.18 1.94 -76.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492601961.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.901 kcal (2) G-P(sol) polarization free energy of solvation -78.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds