Wall clock time and date at job start Tue Mar 31 2020 11:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34768 * 119.99913 * 2 1 4 4 O 1.21288 * 119.99755 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00206 * 359.97438 * 3 2 1 6 6 C 1.53008 * 109.47245 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47313 * 305.00638 * 6 5 3 8 8 C 1.50697 * 109.46933 * 65.00511 * 6 5 3 9 9 H 1.08003 * 120.00027 * 234.68073 * 8 6 5 10 10 C 1.37881 * 120.00109 * 54.67467 * 8 6 5 11 11 N 1.31513 * 119.99974 * 4.87574 * 10 8 6 12 12 Si 1.86802 * 120.00164 * 184.87366 * 10 8 6 13 13 H 1.48508 * 109.47032 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47137 * 119.99795 * 12 10 8 15 15 H 1.48500 * 109.47362 * 240.00455 * 12 10 8 16 16 C 1.50697 * 109.47204 * 184.99978 * 6 5 3 17 17 C 1.38234 * 119.99761 * 151.48358 * 16 6 5 18 18 C 1.38244 * 119.99763 * 179.78903 * 17 16 6 19 19 C 1.38235 * 119.99918 * 0.44639 * 18 17 16 20 20 C 1.38232 * 120.00173 * 359.81200 * 19 18 17 21 21 C 1.38236 * 120.00197 * 331.76634 * 16 6 5 22 22 C 1.39001 * 119.99901 * 180.26660 * 2 1 3 23 23 N 1.29621 * 124.94490 * 179.42165 * 22 2 1 24 24 C 1.31989 * 116.91592 * 179.77712 * 23 22 2 25 25 C 1.33446 * 114.56926 * 0.51398 * 24 23 22 26 26 S 1.70975 * 124.94291 * 359.73032 * 22 2 1 27 27 H 1.09004 * 109.46770 * 90.00362 * 1 2 3 28 28 H 1.08998 * 109.47355 * 210.00569 * 1 2 3 29 29 H 1.09004 * 109.47087 * 330.00660 * 1 2 3 30 30 H 1.09001 * 109.47632 * 300.00418 * 5 3 2 31 31 H 1.09003 * 109.46966 * 60.00689 * 5 3 2 32 32 H 0.97003 * 119.99674 * 179.97438 * 11 10 8 33 33 H 1.07999 * 120.00294 * 0.02562 * 17 16 6 34 34 H 1.08002 * 119.99849 * 180.28125 * 18 17 16 35 35 H 1.08001 * 119.99822 * 179.82862 * 19 18 17 36 36 H 1.07998 * 120.00452 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00066 * 359.97438 * 21 16 6 38 38 H 1.08002 * 122.71546 * 180.25056 * 24 23 22 39 39 H 1.08000 * 125.96516 * 179.73112 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0639 3.5287 0.8407 8 6 3.1624 3.6263 -1.2888 9 1 4.2421 3.6108 -1.2645 10 6 2.5003 3.6377 -2.4982 11 7 1.1906 3.7532 -2.5297 12 14 3.4634 3.4893 -4.0919 13 1 4.9118 3.3717 -3.7858 14 1 3.0145 2.2820 -4.8309 15 1 3.2296 4.6956 -4.9258 16 6 1.6303 4.9368 0.1221 17 6 2.2345 6.0285 0.7172 18 6 1.5487 7.2238 0.8264 19 6 0.2554 7.3247 0.3487 20 6 -0.3507 6.2315 -0.2416 21 6 0.3367 5.0375 -0.3546 22 6 2.1600 -1.2038 -0.0056 23 7 3.4514 -1.3155 -0.0168 24 6 3.9452 -2.5395 -0.0161 25 6 3.0273 -3.5082 -0.0145 26 16 1.4359 -2.7526 -0.0062 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 0.7590 2.5298 -0.8908 31 1 0.7585 2.5302 0.8892 32 1 0.7248 3.7616 -3.3806 33 1 3.2437 5.9487 1.0935 34 1 2.0223 8.0780 1.2872 35 1 -0.2814 8.2577 0.4365 36 1 -1.3609 6.3104 -0.6152 37 1 -0.1368 4.1834 -0.8159 38 1 5.0063 -2.7409 -0.0209 39 1 3.2256 -4.5698 -0.0178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526003922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:00 Heat of formation + Delta-G solvation = 60.824403 kcal Electronic energy + Delta-G solvation = -24026.829128 eV Core-core repulsion = 20641.352296 eV Total energy + Delta-G solvation = -3385.476832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12310 -38.68613 -37.99548 -35.35204 -34.27270 -31.17000 -30.02684 -29.76169 -28.41695 -26.70228 -26.29912 -24.55623 -22.70499 -21.57862 -21.02595 -19.65183 -18.50253 -17.89538 -16.51022 -16.23964 -15.88064 -15.62272 -15.30689 -14.87958 -14.64985 -13.89956 -13.82804 -13.66020 -13.15221 -13.05145 -12.88567 -12.63664 -12.48573 -12.24939 -11.74176 -11.54693 -11.48395 -11.28513 -10.95048 -10.83310 -10.52874 -10.23163 -10.03113 -9.98506 -9.62383 -9.35486 -9.17425 -9.10478 -8.71294 -8.44341 -7.84151 -7.82308 -7.47973 -6.02973 -4.12436 1.00455 1.23828 1.86052 2.46518 2.55049 3.02374 3.08591 3.28391 3.36333 3.44824 3.65480 4.41327 4.74411 4.93719 5.12860 5.20186 5.33056 5.41417 5.46856 5.68797 5.72220 5.79166 5.86926 5.98361 6.16279 6.23308 6.37618 6.47752 6.61130 6.70673 6.73636 7.02543 7.10527 7.21248 7.36960 7.48476 7.51322 7.67123 7.89606 8.04534 8.13315 8.18155 8.28532 8.83801 8.92494 9.51715 10.91208 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.004432 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.088382 B = 6315.945567 C = 7085.842985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.538 5.538 3 C 0.513 3.487 4 O -0.450 6.450 5 C -0.131 4.131 6 C 0.086 3.914 7 H 0.039 0.961 8 C -0.471 4.471 9 H 0.061 0.939 10 C 0.060 3.940 11 N -0.890 5.890 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.285 1.285 16 C -0.027 4.027 17 C -0.131 4.131 18 C -0.141 4.141 19 C -0.153 4.153 20 C -0.142 4.142 21 C -0.069 4.069 22 C 0.299 3.701 23 N -0.488 5.488 24 C 0.077 3.923 25 C -0.299 4.299 26 S 0.083 5.917 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.137 0.863 31 H 0.058 0.942 32 H 0.261 0.739 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.174 0.826 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.144 -8.852 5.698 12.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.270 5.270 3 C 0.301 3.699 4 O -0.315 6.315 5 C -0.171 4.171 6 C 0.067 3.933 7 H 0.058 0.942 8 C -0.508 4.508 9 H 0.079 0.921 10 C -0.139 4.139 11 N -0.530 5.530 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.027 4.027 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.172 4.172 20 C -0.161 4.161 21 C -0.088 4.088 22 C -0.069 4.069 23 N -0.209 5.209 24 C -0.074 4.074 25 C -0.440 4.440 26 S 0.331 5.669 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.155 0.845 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.157 0.843 38 H 0.191 0.809 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.290 -8.568 5.545 11.988 hybrid contribution 1.321 -0.217 -1.257 1.836 sum -4.969 -8.785 4.289 10.966 Atomic orbital electron populations 1.22060 0.77228 1.04089 1.03594 1.45953 1.07365 1.02397 1.71281 1.21744 0.88954 0.84065 0.75167 1.90738 1.13633 1.85311 1.41787 1.22053 1.00745 0.90355 1.03953 1.17675 0.91902 0.86471 0.97273 0.94233 1.21044 0.93261 1.47247 0.89284 0.92060 1.24879 0.95049 0.94996 0.98995 1.69659 1.06744 1.51155 1.25445 0.86519 0.80771 0.77347 0.83452 1.19702 1.21194 1.21147 1.20268 0.93088 0.96916 0.92455 1.20899 0.99177 0.93294 1.01539 1.20807 0.95292 0.97183 1.02623 1.20774 0.95795 0.97959 1.02633 1.21043 0.99346 0.94357 1.01324 1.21339 0.94386 0.97891 0.95150 1.24125 0.91070 0.91767 0.99911 1.66623 1.08754 1.24143 1.21408 1.21701 1.01322 0.85421 0.98965 1.26629 0.93428 1.04351 1.19573 1.83669 1.10924 0.98962 1.73306 0.90906 0.91119 0.88458 0.84530 0.92335 0.92920 0.87611 0.88052 0.88267 0.88039 0.84328 0.80947 0.80927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 9.93 59.85 0.59 1.51 16 2 N -0.54 -9.61 3.07 -124.80 -0.38 -10.00 16 3 C 0.51 11.13 7.38 -10.99 -0.08 11.05 16 4 O -0.45 -11.54 13.62 5.55 0.08 -11.47 16 5 C -0.13 -2.70 2.63 -27.88 -0.07 -2.77 16 6 C 0.09 2.03 1.97 -92.92 -0.18 1.84 16 7 H 0.04 0.96 7.91 -51.93 -0.41 0.54 16 8 C -0.47 -12.56 7.27 -34.44 -0.25 -12.81 16 9 H 0.06 1.75 7.82 -52.48 -0.41 1.34 16 10 C 0.06 1.58 5.12 -17.82 -0.09 1.49 16 11 N -0.89 -22.21 7.99 55.43 0.44 -21.77 16 12 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 C -0.03 -0.59 4.69 -104.63 -0.49 -1.08 16 17 C -0.13 -2.74 9.71 -39.58 -0.38 -3.13 16 18 C -0.14 -2.66 10.05 -39.58 -0.40 -3.06 16 19 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 20 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 21 C -0.07 -1.46 7.45 -39.58 -0.30 -1.76 16 22 C 0.30 5.33 7.68 -87.35 -0.67 4.66 16 23 N -0.49 -9.62 8.65 -15.12 -0.13 -9.75 16 24 C 0.08 1.18 11.34 -19.16 -0.22 0.96 16 25 C -0.30 -3.73 11.35 29.06 0.33 -3.40 16 26 S 0.08 1.07 21.70 -107.50 -2.33 -1.26 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.70 7.06 -51.93 -0.37 0.33 16 29 H 0.10 1.09 6.44 -51.93 -0.33 0.76 16 30 H 0.14 2.95 4.67 -51.93 -0.24 2.71 16 31 H 0.06 1.04 7.40 -51.93 -0.38 0.65 16 32 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 33 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 34 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 35 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.14 2.95 5.18 -52.49 -0.27 2.68 16 38 H 0.17 2.14 8.06 -52.49 -0.42 1.72 16 39 H 0.17 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -31.41 333.82 -9.84 -41.25 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.52 Total: 4.11 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -3.01 Total: -12.83 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.07 Total: -41.51 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.33 Total: -1.26 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.41 -9.84 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526003922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.072 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds