Wall clock time and date at job start Tue Mar 31 2020 11:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34768 * 119.99913 * 2 1 4 4 O 1.21288 * 119.99755 * 179.97438 * 3 2 1 5 5 C 1.50695 * 120.00206 * 359.97438 * 3 2 1 6 6 C 1.53008 * 109.47245 * 180.02562 * 5 3 2 7 7 H 1.08998 * 109.47313 * 305.00638 * 6 5 3 8 8 C 1.50697 * 109.46933 * 65.00511 * 6 5 3 9 9 H 1.08003 * 120.00027 * 234.68073 * 8 6 5 10 10 C 1.37881 * 120.00109 * 54.67467 * 8 6 5 11 11 N 1.31513 * 119.99974 * 4.87574 * 10 8 6 12 12 Si 1.86802 * 120.00164 * 184.87366 * 10 8 6 13 13 H 1.48508 * 109.47032 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.47137 * 119.99795 * 12 10 8 15 15 H 1.48500 * 109.47362 * 240.00455 * 12 10 8 16 16 C 1.50697 * 109.47204 * 184.99978 * 6 5 3 17 17 C 1.38234 * 119.99761 * 151.48358 * 16 6 5 18 18 C 1.38244 * 119.99763 * 179.78903 * 17 16 6 19 19 C 1.38235 * 119.99918 * 0.44639 * 18 17 16 20 20 C 1.38232 * 120.00173 * 359.81200 * 19 18 17 21 21 C 1.38236 * 120.00197 * 331.76634 * 16 6 5 22 22 C 1.39001 * 119.99901 * 180.26660 * 2 1 3 23 23 N 1.29621 * 124.94490 * 179.42165 * 22 2 1 24 24 C 1.31989 * 116.91592 * 179.77712 * 23 22 2 25 25 C 1.33446 * 114.56926 * 0.51398 * 24 23 22 26 26 S 1.70975 * 124.94291 * 359.73032 * 22 2 1 27 27 H 1.09004 * 109.46770 * 90.00362 * 1 2 3 28 28 H 1.08998 * 109.47355 * 210.00569 * 1 2 3 29 29 H 1.09004 * 109.47087 * 330.00660 * 1 2 3 30 30 H 1.09001 * 109.47632 * 300.00418 * 5 3 2 31 31 H 1.09003 * 109.46966 * 60.00689 * 5 3 2 32 32 H 0.97003 * 119.99674 * 179.97438 * 11 10 8 33 33 H 1.07999 * 120.00294 * 0.02562 * 17 16 6 34 34 H 1.08002 * 119.99849 * 180.28125 * 18 17 16 35 35 H 1.08001 * 119.99822 * 179.82862 * 19 18 17 36 36 H 1.07998 * 120.00452 * 180.02562 * 20 19 18 37 37 H 1.08002 * 120.00066 * 359.97438 * 21 16 6 38 38 H 1.08002 * 122.71546 * 180.25056 * 24 23 22 39 39 H 1.08000 * 125.96516 * 179.73112 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0639 3.5287 0.8407 8 6 3.1624 3.6263 -1.2888 9 1 4.2421 3.6108 -1.2645 10 6 2.5003 3.6377 -2.4982 11 7 1.1906 3.7532 -2.5297 12 14 3.4634 3.4893 -4.0919 13 1 4.9118 3.3717 -3.7858 14 1 3.0145 2.2820 -4.8309 15 1 3.2296 4.6956 -4.9258 16 6 1.6303 4.9368 0.1221 17 6 2.2345 6.0285 0.7172 18 6 1.5487 7.2238 0.8264 19 6 0.2554 7.3247 0.3487 20 6 -0.3507 6.2315 -0.2416 21 6 0.3367 5.0375 -0.3546 22 6 2.1600 -1.2038 -0.0056 23 7 3.4514 -1.3155 -0.0168 24 6 3.9452 -2.5395 -0.0161 25 6 3.0273 -3.5082 -0.0145 26 16 1.4359 -2.7526 -0.0062 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8901 0.5137 30 1 0.7590 2.5298 -0.8908 31 1 0.7585 2.5302 0.8892 32 1 0.7248 3.7616 -3.3806 33 1 3.2437 5.9487 1.0935 34 1 2.0223 8.0780 1.2872 35 1 -0.2814 8.2577 0.4365 36 1 -1.3609 6.3104 -0.6152 37 1 -0.1368 4.1834 -0.8159 38 1 5.0063 -2.7409 -0.0209 39 1 3.2256 -4.5698 -0.0178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526003922.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:00 Heat of formation + Delta-G solvation = 44.000679 kcal Electronic energy + Delta-G solvation = -24027.558660 eV Core-core repulsion = 20641.352296 eV Total energy + Delta-G solvation = -3386.206363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.099 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51148 -40.13930 -39.47210 -36.79045 -36.04184 -33.02375 -31.46642 -31.09850 -29.92315 -28.07631 -27.80101 -26.00525 -24.32207 -23.06968 -22.38927 -21.23378 -19.84875 -19.20951 -18.22517 -17.80894 -17.32825 -17.05528 -16.77710 -16.62364 -15.81609 -15.49517 -15.40334 -15.12411 -14.64637 -14.48259 -14.16255 -13.99550 -13.78577 -13.61765 -13.39673 -13.24772 -13.13285 -12.85588 -12.73796 -12.35119 -12.32134 -11.89133 -11.72283 -11.31801 -11.16196 -11.09011 -10.91966 -10.50144 -10.21397 -10.05416 -9.38792 -9.12216 -9.04282 -7.98892 -6.13607 -0.16745 0.09170 0.77091 0.89953 1.01005 1.29818 1.33873 1.44939 1.74004 1.84240 2.21905 2.41435 3.15352 3.38118 3.52460 4.04096 4.17654 4.31933 4.43044 4.45119 4.46836 4.50479 4.61155 4.66082 4.73549 4.75584 4.87732 5.07102 5.08371 5.13575 5.26208 5.48818 5.53686 5.59227 5.67760 5.85325 5.95631 6.06236 6.13861 6.33475 6.41807 6.58724 6.80052 6.99777 7.37304 7.48872 8.90393 Molecular weight = 316.10amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.004432 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.088382 B = 6315.945567 C = 7085.842985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.542 5.542 3 C 0.509 3.491 4 O -0.508 6.508 5 C -0.117 4.117 6 C 0.087 3.913 7 H 0.013 0.987 8 C -0.491 4.491 9 H 0.022 0.978 10 C 0.039 3.961 11 N -0.880 5.880 12 Si 0.923 3.077 13 H -0.292 1.292 14 H -0.283 1.283 15 H -0.275 1.275 16 C -0.049 4.049 17 C -0.153 4.153 18 C -0.140 4.140 19 C -0.148 4.148 20 C -0.144 4.144 21 C -0.079 4.079 22 C 0.246 3.754 23 N -0.543 5.543 24 C 0.040 3.960 25 C -0.273 4.273 26 S 0.171 5.829 27 H 0.080 0.920 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.087 0.913 32 H 0.264 0.736 33 H 0.100 0.900 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.187 0.813 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 -9.665 5.762 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.273 5.273 3 C 0.297 3.703 4 O -0.378 6.378 5 C -0.157 4.157 6 C 0.068 3.932 7 H 0.031 0.969 8 C -0.529 4.529 9 H 0.041 0.959 10 C -0.161 4.161 11 N -0.520 5.520 12 Si 0.752 3.248 13 H -0.218 1.218 14 H -0.209 1.209 15 H -0.201 1.201 16 C -0.050 4.050 17 C -0.171 4.171 18 C -0.158 4.158 19 C -0.166 4.166 20 C -0.162 4.162 21 C -0.097 4.097 22 C -0.120 4.120 23 N -0.266 5.266 24 C -0.110 4.110 25 C -0.413 4.413 26 S 0.420 5.580 27 H 0.098 0.902 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.204 0.796 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.319 -9.414 5.610 14.385 hybrid contribution 2.221 -0.100 -1.223 2.537 sum -7.098 -9.514 4.386 12.655 Atomic orbital electron populations 1.22396 0.74310 1.06197 1.04740 1.45777 1.09013 1.01826 1.70720 1.21847 0.88408 0.85564 0.74480 1.90702 1.15829 1.86540 1.44694 1.21851 0.99818 0.89233 1.04818 1.17547 0.92179 0.88800 0.94686 0.96892 1.20948 0.91734 1.48791 0.91457 0.95915 1.25140 0.95948 0.95205 0.99795 1.69710 1.06170 1.50413 1.25661 0.86042 0.79011 0.77618 0.82142 1.21808 1.20895 1.20072 1.20205 0.94020 0.96423 0.94341 1.21065 0.99423 0.94273 1.02338 1.21145 0.95675 0.97014 1.01982 1.21208 0.95462 0.99079 1.00833 1.21378 1.00486 0.93668 1.00710 1.21323 0.93976 0.98870 0.95578 1.24395 0.91629 0.93574 1.02384 1.66551 1.10906 1.27207 1.21904 1.21960 1.02765 0.84909 1.01356 1.27258 0.93007 1.05909 1.15131 1.83246 1.09430 0.94381 1.70977 0.90175 0.88128 0.87344 0.85027 0.89538 0.92623 0.88220 0.85177 0.84616 0.85281 0.84810 0.79599 0.76760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.51 9.93 127.77 1.27 2.78 16 2 N -0.54 -19.58 3.07 -667.14 -2.05 -21.63 16 3 C 0.51 23.14 7.38 87.66 0.65 23.79 16 4 O -0.51 -28.07 13.62 -3.05 -0.04 -28.11 16 5 C -0.12 -4.99 2.63 29.85 0.08 -4.91 16 6 C 0.09 4.34 1.97 -12.29 -0.02 4.31 16 7 H 0.01 0.67 7.91 -2.39 -0.02 0.65 16 8 C -0.49 -27.84 7.27 25.60 0.19 -27.65 16 9 H 0.02 1.41 7.82 -2.91 -0.02 1.38 16 10 C 0.04 2.09 5.12 84.66 0.43 2.53 16 11 N -0.88 -44.06 7.99 21.45 0.17 -43.89 16 12 Si 0.92 45.53 29.54 68.60 2.03 47.56 16 13 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16 14 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 16 C -0.05 -2.24 4.69 -19.87 -0.09 -2.33 16 17 C -0.15 -6.49 9.71 22.27 0.22 -6.28 16 18 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16 19 C -0.15 -4.92 10.05 22.27 0.22 -4.70 16 20 C -0.14 -5.15 10.05 22.27 0.22 -4.92 16 21 C -0.08 -3.27 7.45 22.27 0.17 -3.11 16 22 C 0.25 8.77 7.68 179.21 1.38 10.15 16 23 N -0.54 -22.10 8.65 -201.75 -1.75 -23.85 16 24 C 0.04 1.21 11.34 83.58 0.95 2.16 16 25 C -0.27 -6.01 11.35 66.73 0.76 -5.25 16 26 S 0.17 3.92 21.70 -56.49 -1.23 2.70 16 27 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 28 H 0.10 1.71 7.06 -2.39 -0.02 1.69 16 29 H 0.11 2.27 6.44 -2.38 -0.02 2.25 16 30 H 0.13 5.77 4.67 -2.39 -0.01 5.76 16 31 H 0.09 3.10 7.40 -2.39 -0.02 3.08 16 32 H 0.26 12.69 8.31 -92.71 -0.77 11.92 16 33 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16 34 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 35 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 37 H 0.13 5.60 5.18 -2.91 -0.02 5.58 16 38 H 0.19 4.68 8.06 -2.91 -0.02 4.66 16 39 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -73.36 333.82 4.84 -68.52 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 1.07 Total: 16.94 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: 6.63 Total: -18.24 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -3.63 Total: -89.37 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.11 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.23 Total: 2.70 kcal Total: -73.36 4.84 -68.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526003922.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.525 kcal (2) G-P(sol) polarization free energy of solvation -73.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds