Wall clock time and date at job start Tue Mar 31 2020 11:48:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.34768 * 119.99913 * 2 1
4 4 O 1.21288 * 119.99755 * 179.97438 * 3 2 1
5 5 C 1.50695 * 120.00206 * 359.97438 * 3 2 1
6 6 C 1.53008 * 109.47245 * 180.02562 * 5 3 2
7 7 H 1.08998 * 109.47313 * 305.00638 * 6 5 3
8 8 C 1.50697 * 109.46933 * 65.00511 * 6 5 3
9 9 H 1.08003 * 120.00027 * 234.68073 * 8 6 5
10 10 C 1.37881 * 120.00109 * 54.67467 * 8 6 5
11 11 N 1.31513 * 119.99974 * 4.87574 * 10 8 6
12 12 Si 1.86802 * 120.00164 * 184.87366 * 10 8 6
13 13 H 1.48508 * 109.47032 * 0.02562 * 12 10 8
14 14 H 1.48500 * 109.47137 * 119.99795 * 12 10 8
15 15 H 1.48500 * 109.47362 * 240.00455 * 12 10 8
16 16 C 1.50697 * 109.47204 * 184.99978 * 6 5 3
17 17 C 1.38234 * 119.99761 * 151.48358 * 16 6 5
18 18 C 1.38244 * 119.99763 * 179.78903 * 17 16 6
19 19 C 1.38235 * 119.99918 * 0.44639 * 18 17 16
20 20 C 1.38232 * 120.00173 * 359.81200 * 19 18 17
21 21 C 1.38236 * 120.00197 * 331.76634 * 16 6 5
22 22 C 1.39001 * 119.99901 * 180.26660 * 2 1 3
23 23 N 1.29621 * 124.94490 * 179.42165 * 22 2 1
24 24 C 1.31989 * 116.91592 * 179.77712 * 23 22 2
25 25 C 1.33446 * 114.56926 * 0.51398 * 24 23 22
26 26 S 1.70975 * 124.94291 * 359.73032 * 22 2 1
27 27 H 1.09004 * 109.46770 * 90.00362 * 1 2 3
28 28 H 1.08998 * 109.47355 * 210.00569 * 1 2 3
29 29 H 1.09004 * 109.47087 * 330.00660 * 1 2 3
30 30 H 1.09001 * 109.47632 * 300.00418 * 5 3 2
31 31 H 1.09003 * 109.46966 * 60.00689 * 5 3 2
32 32 H 0.97003 * 119.99674 * 179.97438 * 11 10 8
33 33 H 1.07999 * 120.00294 * 0.02562 * 17 16 6
34 34 H 1.08002 * 119.99849 * 180.28125 * 18 17 16
35 35 H 1.08001 * 119.99822 * 179.82862 * 19 18 17
36 36 H 1.07998 * 120.00452 * 180.02562 * 20 19 18
37 37 H 1.08002 * 120.00066 * 359.97438 * 21 16 6
38 38 H 1.08002 * 122.71546 * 180.25056 * 24 23 22
39 39 H 1.08000 * 125.96516 * 179.73112 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 3.3517 1.1671 0.0005
5 6 1.3854 2.4722 -0.0006
6 6 2.3797 3.6352 -0.0011
7 1 3.0639 3.5287 0.8407
8 6 3.1624 3.6263 -1.2888
9 1 4.2421 3.6108 -1.2645
10 6 2.5003 3.6377 -2.4982
11 7 1.1906 3.7532 -2.5297
12 14 3.4634 3.4893 -4.0919
13 1 4.9118 3.3717 -3.7858
14 1 3.0145 2.2820 -4.8309
15 1 3.2296 4.6956 -4.9258
16 6 1.6303 4.9368 0.1221
17 6 2.2345 6.0285 0.7172
18 6 1.5487 7.2238 0.8264
19 6 0.2554 7.3247 0.3487
20 6 -0.3507 6.2315 -0.2416
21 6 0.3367 5.0375 -0.3546
22 6 2.1600 -1.2038 -0.0056
23 7 3.4514 -1.3155 -0.0168
24 6 3.9452 -2.5395 -0.0161
25 6 3.0273 -3.5082 -0.0145
26 16 1.4359 -2.7526 -0.0062
27 1 -0.3633 -0.0001 -1.0277
28 1 -0.3634 -0.8899 0.5139
29 1 -0.3633 0.8901 0.5137
30 1 0.7590 2.5298 -0.8908
31 1 0.7585 2.5302 0.8892
32 1 0.7248 3.7616 -3.3806
33 1 3.2437 5.9487 1.0935
34 1 2.0223 8.0780 1.2872
35 1 -0.2814 8.2577 0.4365
36 1 -1.3609 6.3104 -0.6152
37 1 -0.1368 4.1834 -0.8159
38 1 5.0063 -2.7409 -0.0209
39 1 3.2256 -4.5698 -0.0178
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000526003922.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:48:00
Heat of formation + Delta-G solvation = 44.000679 kcal
Electronic energy + Delta-G solvation = -24027.558660 eV
Core-core repulsion = 20641.352296 eV
Total energy + Delta-G solvation = -3386.206363 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.099 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.51148 -40.13930 -39.47210 -36.79045 -36.04184 -33.02375 -31.46642 -31.09850
-29.92315 -28.07631 -27.80101 -26.00525 -24.32207 -23.06968 -22.38927 -21.23378
-19.84875 -19.20951 -18.22517 -17.80894 -17.32825 -17.05528 -16.77710 -16.62364
-15.81609 -15.49517 -15.40334 -15.12411 -14.64637 -14.48259 -14.16255 -13.99550
-13.78577 -13.61765 -13.39673 -13.24772 -13.13285 -12.85588 -12.73796 -12.35119
-12.32134 -11.89133 -11.72283 -11.31801 -11.16196 -11.09011 -10.91966 -10.50144
-10.21397 -10.05416 -9.38792 -9.12216 -9.04282 -7.98892 -6.13607 -0.16745
0.09170 0.77091 0.89953 1.01005 1.29818 1.33873 1.44939 1.74004
1.84240 2.21905 2.41435 3.15352 3.38118 3.52460 4.04096 4.17654
4.31933 4.43044 4.45119 4.46836 4.50479 4.61155 4.66082 4.73549
4.75584 4.87732 5.07102 5.08371 5.13575 5.26208 5.48818 5.53686
5.59227 5.67760 5.85325 5.95631 6.06236 6.13861 6.33475 6.41807
6.58724 6.80052 6.99777 7.37304 7.48872 8.90393
Molecular weight = 316.10amu
Principal moments of inertia in cm(-1)
A = 0.015950 B = 0.004432 C = 0.003951
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1755.088382 B = 6315.945567 C = 7085.842985
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.064 3.936
2 N -0.542 5.542
3 C 0.509 3.491
4 O -0.508 6.508
5 C -0.117 4.117
6 C 0.087 3.913
7 H 0.013 0.987
8 C -0.491 4.491
9 H 0.022 0.978
10 C 0.039 3.961
11 N -0.880 5.880
12 Si 0.923 3.077
13 H -0.292 1.292
14 H -0.283 1.283
15 H -0.275 1.275
16 C -0.049 4.049
17 C -0.153 4.153
18 C -0.140 4.140
19 C -0.148 4.148
20 C -0.144 4.144
21 C -0.079 4.079
22 C 0.246 3.754
23 N -0.543 5.543
24 C 0.040 3.960
25 C -0.273 4.273
26 S 0.171 5.829
27 H 0.080 0.920
28 H 0.100 0.900
29 H 0.108 0.892
30 H 0.132 0.868
31 H 0.087 0.913
32 H 0.264 0.736
33 H 0.100 0.900
34 H 0.130 0.870
35 H 0.136 0.864
36 H 0.129 0.871
37 H 0.134 0.866
38 H 0.187 0.813
39 H 0.216 0.784
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.107 -9.665 5.762 14.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 N -0.273 5.273
3 C 0.297 3.703
4 O -0.378 6.378
5 C -0.157 4.157
6 C 0.068 3.932
7 H 0.031 0.969
8 C -0.529 4.529
9 H 0.041 0.959
10 C -0.161 4.161
11 N -0.520 5.520
12 Si 0.752 3.248
13 H -0.218 1.218
14 H -0.209 1.209
15 H -0.201 1.201
16 C -0.050 4.050
17 C -0.171 4.171
18 C -0.158 4.158
19 C -0.166 4.166
20 C -0.162 4.162
21 C -0.097 4.097
22 C -0.120 4.120
23 N -0.266 5.266
24 C -0.110 4.110
25 C -0.413 4.413
26 S 0.420 5.580
27 H 0.098 0.902
28 H 0.119 0.881
29 H 0.127 0.873
30 H 0.150 0.850
31 H 0.105 0.895
32 H 0.074 0.926
33 H 0.118 0.882
34 H 0.148 0.852
35 H 0.154 0.846
36 H 0.147 0.853
37 H 0.152 0.848
38 H 0.204 0.796
39 H 0.232 0.768
Dipole moment (debyes) X Y Z Total
from point charges -9.319 -9.414 5.610 14.385
hybrid contribution 2.221 -0.100 -1.223 2.537
sum -7.098 -9.514 4.386 12.655
Atomic orbital electron populations
1.22396 0.74310 1.06197 1.04740 1.45777 1.09013 1.01826 1.70720
1.21847 0.88408 0.85564 0.74480 1.90702 1.15829 1.86540 1.44694
1.21851 0.99818 0.89233 1.04818 1.17547 0.92179 0.88800 0.94686
0.96892 1.20948 0.91734 1.48791 0.91457 0.95915 1.25140 0.95948
0.95205 0.99795 1.69710 1.06170 1.50413 1.25661 0.86042 0.79011
0.77618 0.82142 1.21808 1.20895 1.20072 1.20205 0.94020 0.96423
0.94341 1.21065 0.99423 0.94273 1.02338 1.21145 0.95675 0.97014
1.01982 1.21208 0.95462 0.99079 1.00833 1.21378 1.00486 0.93668
1.00710 1.21323 0.93976 0.98870 0.95578 1.24395 0.91629 0.93574
1.02384 1.66551 1.10906 1.27207 1.21904 1.21960 1.02765 0.84909
1.01356 1.27258 0.93007 1.05909 1.15131 1.83246 1.09430 0.94381
1.70977 0.90175 0.88128 0.87344 0.85027 0.89538 0.92623 0.88220
0.85177 0.84616 0.85281 0.84810 0.79599 0.76760
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 1.51 9.93 127.77 1.27 2.78 16
2 N -0.54 -19.58 3.07 -667.14 -2.05 -21.63 16
3 C 0.51 23.14 7.38 87.66 0.65 23.79 16
4 O -0.51 -28.07 13.62 -3.05 -0.04 -28.11 16
5 C -0.12 -4.99 2.63 29.85 0.08 -4.91 16
6 C 0.09 4.34 1.97 -12.29 -0.02 4.31 16
7 H 0.01 0.67 7.91 -2.39 -0.02 0.65 16
8 C -0.49 -27.84 7.27 25.60 0.19 -27.65 16
9 H 0.02 1.41 7.82 -2.91 -0.02 1.38 16
10 C 0.04 2.09 5.12 84.66 0.43 2.53 16
11 N -0.88 -44.06 7.99 21.45 0.17 -43.89 16
12 Si 0.92 45.53 29.54 68.60 2.03 47.56 16
13 H -0.29 -15.25 7.11 99.48 0.71 -14.54 16
14 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16
15 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16
16 C -0.05 -2.24 4.69 -19.87 -0.09 -2.33 16
17 C -0.15 -6.49 9.71 22.27 0.22 -6.28 16
18 C -0.14 -5.02 10.05 22.27 0.22 -4.79 16
19 C -0.15 -4.92 10.05 22.27 0.22 -4.70 16
20 C -0.14 -5.15 10.05 22.27 0.22 -4.92 16
21 C -0.08 -3.27 7.45 22.27 0.17 -3.11 16
22 C 0.25 8.77 7.68 179.21 1.38 10.15 16
23 N -0.54 -22.10 8.65 -201.75 -1.75 -23.85 16
24 C 0.04 1.21 11.34 83.58 0.95 2.16 16
25 C -0.27 -6.01 11.35 66.73 0.76 -5.25 16
26 S 0.17 3.92 21.70 -56.49 -1.23 2.70 16
27 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16
28 H 0.10 1.71 7.06 -2.39 -0.02 1.69 16
29 H 0.11 2.27 6.44 -2.38 -0.02 2.25 16
30 H 0.13 5.77 4.67 -2.39 -0.01 5.76 16
31 H 0.09 3.10 7.40 -2.39 -0.02 3.08 16
32 H 0.26 12.69 8.31 -92.71 -0.77 11.92 16
33 H 0.10 4.21 8.06 -2.91 -0.02 4.18 16
34 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16
35 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16
36 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16
37 H 0.13 5.60 5.18 -2.91 -0.02 5.58 16
38 H 0.19 4.68 8.06 -2.91 -0.02 4.66 16
39 H 0.22 2.79 8.06 -2.91 -0.02 2.77 16
Total: -1.00 -73.36 333.82 4.84 -68.52
By element:
Atomic # 1 Polarization: 15.87 SS G_CDS: 1.07 Total: 16.94 kcal
Atomic # 6 Polarization: -24.87 SS G_CDS: 6.63 Total: -18.24 kcal
Atomic # 7 Polarization: -85.75 SS G_CDS: -3.63 Total: -89.37 kcal
Atomic # 8 Polarization: -28.07 SS G_CDS: -0.04 Total: -28.11 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal
Atomic # 16 Polarization: 3.92 SS G_CDS: -1.23 Total: 2.70 kcal
Total: -73.36 4.84 -68.52 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000526003922.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.525 kcal
(2) G-P(sol) polarization free energy of solvation -73.361 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.163 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.524 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds